RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 USP17L5A8MUK1 530 aa9.03□□□□□ -0.96
CCDC88A-210ENST00000468534 TATP17735 454 aaPredicted RBP9.03□□□□□ -0.96
CCDC88A-210ENST00000468534 AMPD1P23109 780 aa9.03□□□□□ -0.96
CCDC88A-210ENST00000468534 SNRPNP63162 240 aaKnown RBP9.03□□□□□ -0.96
CCDC88A-210ENST00000468534 FIGNL1Q6PIW4 674 aa9.03□□□□□ -0.96
CCDC88A-210ENST00000468534 EDARADDQ8WWZ3 215 aa9.03□□□□□ -0.96
CCDC88A-210ENST00000468534 LRRC4BQ9NT99 713 aa9.03□□□□□ -0.96
CCDC88A-210ENST00000468534 GGA1Q9UJY5 639 aa9.03□□□□□ -0.96
CCDC88A-210ENST00000468534 GDF2Q9UK05 429 aaPredicted RBP9.03□□□□□ -0.96
CCDC88A-210ENST00000468534 IQSEC3Q9UPP2 1182 aaPredicted RBP9.03□□□□□ -0.96
CCDC88A-210ENST00000468534 CDK2AP1O14519 115 aa9.02□□□□□ -0.97
CCDC88A-210ENST00000468534 ATXN7O15265 892 aaPredicted RBP9.02□□□□□ -0.97
CCDC88A-210ENST00000468534 SUZ12Q15022 739 aaKnown RBP9.02□□□□□ -0.97
CCDC88A-210ENST00000468534 MTFR1Q15390 333 aa9.02□□□□□ -0.97
CCDC88A-210ENST00000468534 GOLGA6L1Q8N7Z2 621 aa9.02□□□□□ -0.97
CCDC88A-210ENST00000468534 C1orf216Q8TAB5 229 aa9.02□□□□□ -0.97
CCDC88A-210ENST00000468534 ZNF358Q9NW07 568 aa9.02□□□□□ -0.97
CCDC88A-210ENST00000468534 PCDHGC4Q9Y5F7 938 aa9.02□□□□□ -0.97
CCDC88A-210ENST00000468534 BACH1O14867 736 aa9.01□□□□□ -0.97
CCDC88A-210ENST00000468534 KHNYNO15037 678 aaKnown RBP9.01□□□□□ -0.97
CCDC88A-210ENST00000468534 TBCELQ5QJ74 424 aa9.01□□□□□ -0.97
CCDC88A-210ENST00000468534 BICDL1Q6ZP65 573 aa9.01□□□□□ -0.97
CCDC88A-210ENST00000468534 NLRP8Q86W28 1048 aa9.01□□□□□ -0.97
CCDC88A-210ENST00000468534 ZNF295-AS1Q8N0V1 137 aa9.01□□□□□ -0.97
CCDC88A-210ENST00000468534 NFATC2IPQ8NCF5 419 aa9.01□□□□□ -0.97
CCDC88A-210ENST00000468534 ADAMTS19Q8TE59 1207 aa9.01□□□□□ -0.97
CCDC88A-210ENST00000468534 DCAF5Q96JK2 942 aa9.01□□□□□ -0.97
CCDC88A-210ENST00000468534 GJA3Q9Y6H8 435 aa9.01□□□□□ -0.97
CCDC88A-210ENST00000468534 CD33P20138 364 aa9□□□□□ -0.97
CCDC88A-210ENST00000468534 FOXK2Q01167 660 aa9□□□□□ -0.97
CCDC88A-210ENST00000468534 FLIIQ13045 1269 aa9□□□□□ -0.97
CCDC88A-210ENST00000468534 LZTS3O60299 673 aaPredicted RBP8.99□□□□□ -0.97
CCDC88A-210ENST00000468534 MAPTP10636 758 aaKnown RBP8.99□□□□□ -0.97
CCDC88A-210ENST00000468534 TXLNAP40222 546 aa8.99□□□□□ -0.97
CCDC88A-210ENST00000468534 PLA2G4EQ3MJ16 856 aa8.99□□□□□ -0.97
CCDC88A-210ENST00000468534 ZIC5Q96T25 663 aa8.99□□□□□ -0.97
CCDC88A-210ENST00000468534 NEURL1BA8MQ27 555 aa8.98□□□□□ -0.97
CCDC88A-210ENST00000468534 IGHA1P01876 353 aa8.98□□□□□ -0.97
CCDC88A-210ENST00000468534 HDGFL1Q5TGJ6 251 aa8.98□□□□□ -0.97
CCDC88A-210ENST00000468534 SLCO4C1Q6ZQN7 724 aa8.98□□□□□ -0.97
CCDC88A-210ENST00000468534 TNS4Q8IZW8 715 aa8.98□□□□□ -0.97
CCDC88A-210ENST00000468534 ZDHHC3Q9NYG2 299 aa8.98□□□□□ -0.97
CCDC88A-210ENST00000468534 SCHIP1Q9P0W5 487 aaPredicted RBP8.98□□□□□ -0.97
CCDC88A-210ENST00000468534 MKL2Q9ULH7 1088 aa8.98□□□□□ -0.97
CCDC88A-210ENST00000468534 TNP2Q05952 138 aa8.97□□□□□ -0.97
CCDC88A-210ENST00000468534 SLC9A9Q8IVB4 645 aa8.97□□□□□ -0.97
CCDC88A-210ENST00000468534 TPCN2Q8NHX9 752 aa8.97□□□□□ -0.97
CCDC88A-210ENST00000468534 ZDHHC1Q8WTX9 485 aa8.97□□□□□ -0.97
CCDC88A-210ENST00000468534 ZNF232Q9UNY5 417 aa8.97□□□□□ -0.97
CCDC88A-210ENST00000468534 USP17L3A6NCW0 530 aa8.96□□□□□ -0.98
CCDC88A-210ENST00000468534 USP17L4A6NCW7 530 aa8.96□□□□□ -0.98
CCDC88A-210ENST00000468534 ARAFP10398 606 aa8.96□□□□□ -0.98
CCDC88A-210ENST00000468534 USP17L2Q6R6M4 530 aa8.96□□□□□ -0.98
CCDC88A-210ENST00000468534 USP17L1Q7RTZ2 530 aa8.96□□□□□ -0.98
CCDC88A-210ENST00000468534 L3MBTL2Q969R5 705 aa8.96□□□□□ -0.98
CCDC88A-210ENST00000468534 UCN2Q96RP3 112 aa8.96□□□□□ -0.98
CCDC88A-210ENST00000468534 HCN2Q9UL51 889 aa8.96□□□□□ -0.98
CCDC88A-210ENST00000468534 KIAA1024Q9UPX6 916 aa8.96□□□□□ -0.98
CCDC88A-210ENST00000468534 EPXP11678 715 aa8.95□□□□□ -0.98
CCDC88A-210ENST00000468534 TRIM50Q86XT4 487 aa8.95□□□□□ -0.98
CCDC88A-210ENST00000468534 MSTNO14793 375 aa8.94□□□□□ -0.98
CCDC88A-210ENST00000468534 ITGB2P05107 769 aa8.94□□□□□ -0.98
CCDC88A-210ENST00000468534 NOS2P35228 1153 aa8.94□□□□□ -0.98
CCDC88A-210ENST00000468534 GRIN2CQ14957 1233 aa8.94□□□□□ -0.98
CCDC88A-210ENST00000468534 SH3PXD2AQ5TCZ1 1133 aa8.94□□□□□ -0.98
CCDC88A-210ENST00000468534 ATP9BO43861 1147 aa8.93□□□□□ -0.98
CCDC88A-210ENST00000468534 ADH6P28332 368 aa8.93□□□□□ -0.98
CCDC88A-210ENST00000468534 ATP1A2P50993 1020 aa8.93□□□□□ -0.98
CCDC88A-210ENST00000468534 EPHA4P54764 986 aa8.93□□□□□ -0.98
CCDC88A-210ENST00000468534 PCBP4P57723 403 aaKnown RBP8.93□□□□□ -0.98
CCDC88A-210ENST00000468534 CLDN10P78369 228 aa8.93□□□□□ -0.98
CCDC88A-210ENST00000468534 CCDC102BQ68D86 513 aa8.93□□□□□ -0.98
CCDC88A-210ENST00000468534 LRRC69Q6ZNQ3 347 aa8.93□□□□□ -0.98
CCDC88A-210ENST00000468534 CLUAP1Q96AJ1 413 aa8.93□□□□□ -0.98
CCDC88A-210ENST00000468534 BTBD6Q96KE9 485 aa8.93□□□□□ -0.98
CCDC88A-210ENST00000468534 SPOCK3Q9BQ16 436 aa8.93□□□□□ -0.98
CCDC88A-210ENST00000468534 STRN4Q9NRL3 753 aa8.93□□□□□ -0.98
CCDC88A-210ENST00000468534 PRR12Q9ULL5 1215 aa8.93□□□□□ -0.98
CCDC88A-210ENST00000468534 ZBTB7BO15156 539 aaPredicted RBP8.92□□□□□ -0.98
CCDC88A-210ENST00000468534 FAM157BP0CG42 384 aa8.92□□□□□ -0.98
CCDC88A-210ENST00000468534 TEAD4Q15561 434 aa8.92□□□□□ -0.98
CCDC88A-210ENST00000468534 PLEKHM2Q8IWE5 1019 aa8.92□□□□□ -0.98
CCDC88A-210ENST00000468534 ZNF594Q96JF6 807 aaPredicted RBP8.92□□□□□ -0.98
CCDC88A-210ENST00000468534 SUV39H2Q9H5I1 410 aa8.92□□□□□ -0.98
CCDC88A-210ENST00000468534 NEUROD4Q9HD90 331 aa8.92□□□□□ -0.98
CCDC88A-210ENST00000468534 SERTM1A2A2V5 107 aa8.91□□□□□ -0.98
CCDC88A-210ENST00000468534 KRBA1A5PL33 1030 aa8.91□□□□□ -0.98
CCDC88A-210ENST00000468534 HOXB4P17483 251 aaPredicted RBP8.91□□□□□ -0.98
CCDC88A-210ENST00000468534 COL8A1P27658 744 aa8.91□□□□□ -0.98
CCDC88A-210ENST00000468534 FAM182BQ5T319 152 aa8.91□□□□□ -0.98
CCDC88A-210ENST00000468534 FCHSD1Q86WN1 690 aa8.91□□□□□ -0.98
CCDC88A-210ENST00000468534 OGFOD1Q8N543 542 aa8.91□□□□□ -0.98
CCDC88A-210ENST00000468534 TSPAN10Q9H1Z9 355 aaPredicted RBP8.91□□□□□ -0.98
CCDC88A-210ENST00000468534 MARK1Q9P0L2 795 aa8.91□□□□□ -0.98
CCDC88A-210ENST00000468534 MKRN1Q9UHC7 482 aaKnown RBP8.91□□□□□ -0.98
CCDC88A-210ENST00000468534 KLF15Q9UIH9 416 aa8.91□□□□□ -0.98
CCDC88A-210ENST00000468534 LINC00114Q6XXX2 140 aa8.9□□□□□ -0.98
CCDC88A-210ENST00000468534 CHSY3Q70JA7 882 aa8.9□□□□□ -0.98
CCDC88A-210ENST00000468534 RHPN1Q8TCX5 695 aa8.9□□□□□ -0.98
CCDC88A-210ENST00000468534 LOC100996750A0A140TA64 210 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms