RNA–Protein interactions for RNA: ENST00000468300.5

BRCA1-208, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 3,273 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-208ENST00000468300 UNC5CLQ8IV45 518 aa10.53□□□□□ -0.72
BRCA1-208ENST00000468300 PTPRCP08575 1304 aa10.53□□□□□ -0.72
BRCA1-208ENST00000468300 CCDC30Q5VVM6 783 aa10.52□□□□□ -0.72
BRCA1-208ENST00000468300 INTS3Q68E01 1043 aaKnown RBP10.52□□□□□ -0.72
BRCA1-208ENST00000468300 BARGINQ6ZT62 677 aa10.52□□□□□ -0.72
BRCA1-208ENST00000468300 LRP10Q7Z4F1 713 aa10.52□□□□□ -0.72
BRCA1-208ENST00000468300 ZNF496Q96IT1 587 aaPredicted RBP10.52□□□□□ -0.72
BRCA1-208ENST00000468300 FTSJ3Q8IY81 847 aaKnown RBP10.52□□□□□ -0.73
BRCA1-208ENST00000468300 PHAXQ9H814 394 aaKnown RBP10.52□□□□□ -0.73
BRCA1-208ENST00000468300 PROSER3Q2NL68 480 aa10.52□□□□□ -0.73
BRCA1-208ENST00000468300 HDGFL1Q5TGJ6 251 aa10.51□□□□□ -0.73
BRCA1-208ENST00000468300 SKAP1Q86WV1 359 aa10.51□□□□□ -0.73
BRCA1-208ENST00000468300 C8orf37Q96NL8 207 aa10.51□□□□□ -0.73
BRCA1-208ENST00000468300 CHPF2Q9P2E5 772 aa10.51□□□□□ -0.73
BRCA1-208ENST00000468300 MS4A1P11836 297 aa10.51□□□□□ -0.73
BRCA1-208ENST00000468300 CABP4P57796 275 aa10.51□□□□□ -0.73
BRCA1-208ENST00000468300 VPS72Q15906 364 aa10.51□□□□□ -0.73
BRCA1-208ENST00000468300 ITPRIPQ8IWB1 547 aa10.51□□□□□ -0.73
BRCA1-208ENST00000468300 IGSF3O75054 1194 aa10.5□□□□□ -0.73
BRCA1-208ENST00000468300 FLIIQ13045 1269 aa10.5□□□□□ -0.73
BRCA1-208ENST00000468300 AAMPQ13685 434 aa10.5□□□□□ -0.73
BRCA1-208ENST00000468300 API5Q9BZZ5 524 aaKnown RBP10.5□□□□□ -0.73
BRCA1-208ENST00000468300 DDX19BQ9UMR2 479 aa10.5□□□□□ -0.73
BRCA1-208ENST00000468300 BCL9O00512 1426 aa10.5□□□□□ -0.73
BRCA1-208ENST00000468300 TJP1Q07157 1748 aa10.5□□□□□ -0.73
BRCA1-208ENST00000468300 PXDNLA1KZ92 1463 aa10.5□□□□□ -0.73
BRCA1-208ENST00000468300 F6X3S4 739 aa10.5□□□□□ -0.73
BRCA1-208ENST00000468300 MARCH10Q8NA82 808 aaPredicted RBP10.5□□□□□ -0.73
BRCA1-208ENST00000468300 PIGBQ92521 554 aa10.5□□□□□ -0.73
BRCA1-208ENST00000468300 ADCY9O60503 1353 aa10.49□□□□□ -0.73
BRCA1-208ENST00000468300 ANXA1P04083 346 aa10.49□□□□□ -0.73
BRCA1-208ENST00000468300 EIF2S2P20042 333 aaKnown RBP10.49□□□□□ -0.73
BRCA1-208ENST00000468300 USP16Q9Y5T5 823 aa10.49□□□□□ -0.73
BRCA1-208ENST00000468300 NUP188Q5SRE5 1749 aa10.49□□□□□ -0.73
BRCA1-208ENST00000468300 NGLY1Q96IV0 654 aa10.48□□□□□ -0.73
BRCA1-208ENST00000468300 CICQ96RK0 1608 aaPredicted RBP10.48□□□□□ -0.73
BRCA1-208ENST00000468300 ATRNO75882 1429 aa10.48□□□□□ -0.73
BRCA1-208ENST00000468300 EXOC5O00471 708 aa10.48□□□□□ -0.73
BRCA1-208ENST00000468300 SIRT2Q8IXJ6 389 aa10.48□□□□□ -0.73
BRCA1-208ENST00000468300 CDCA7Q9BWT1 371 aaPredicted RBP10.48□□□□□ -0.73
BRCA1-208ENST00000468300 ATP10DQ9P241 1426 aa10.48□□□□□ -0.73
BRCA1-208ENST00000468300 CENPQQ7L2Z9 268 aaPredicted RBP10.48□□□□□ -0.73
BRCA1-208ENST00000468300 STK31Q9BXU1 1019 aa10.48□□□□□ -0.73
BRCA1-208ENST00000468300 ARFGEF2Q9Y6D5 1785 aa10.48□□□□□ -0.73
BRCA1-208ENST00000468300 ATG3Q9NT62 314 aa10.47□□□□□ -0.73
BRCA1-208ENST00000468300 SLC4A9Q96Q91 983 aa10.47□□□□□ -0.73
BRCA1-208ENST00000468300 ASAP1Q9ULH1 1129 aa10.47□□□□□ -0.73
BRCA1-208ENST00000468300 FMNL2Q96PY5 1086 aa10.46□□□□□ -0.73
BRCA1-208ENST00000468300 DBF4Q9UBU7 674 aaPredicted RBP10.46□□□□□ -0.73
BRCA1-208ENST00000468300 SNRPA1P09661 255 aaKnown RBP10.46□□□□□ -0.73
BRCA1-208ENST00000468300 HDAC1Q13547 482 aaPredicted RBP10.46□□□□□ -0.73
BRCA1-208ENST00000468300 USP21Q9UK80 565 aa10.46□□□□□ -0.73
BRCA1-208ENST00000468300 RREB1Q92766 1687 aa10.46□□□□□ -0.74
BRCA1-208ENST00000468300 SBF2Q86WG5 1849 aa10.46□□□□□ -0.74
BRCA1-208ENST00000468300 DDB1Q16531 1140 aa10.46□□□□□ -0.74
BRCA1-208ENST00000468300 FAM98CQ17RN3 349 aaKnown RBP10.46□□□□□ -0.74
BRCA1-208ENST00000468300 C1orf115Q9H7X2 142 aa10.46□□□□□ -0.74
BRCA1-208ENST00000468300 DDX21Q9NR30 783 aaKnown RBP eCLIP10.46□□□□□ -0.74
BRCA1-208ENST00000468300 EP400Q96L91 3159 aa10.46□□□□□ -0.74
BRCA1-208ENST00000468300 NBPF26B4DH59 902 aa10.45□□□□□ -0.74
BRCA1-208ENST00000468300 NBPF14Q5TI25 921 aa10.45□□□□□ -0.74
BRCA1-208ENST00000468300 NBPF10Q6P3W6 841 aaKnown RBP10.45□□□□□ -0.74
BRCA1-208ENST00000468300 NBPF15Q8N660 670 aa10.45□□□□□ -0.74
BRCA1-208ENST00000468300 NAP1L5Q96NT1 182 aaPredicted RBP10.45□□□□□ -0.74
BRCA1-208ENST00000468300 FKBP5Q13451 457 aaPredicted RBP10.45□□□□□ -0.74
BRCA1-208ENST00000468300 MEIS3Q99687 375 aa10.45□□□□□ -0.74
BRCA1-208ENST00000468300 ZNF831Q5JPB2 1677 aa10.45□□□□□ -0.74
BRCA1-208ENST00000468300 TTC5Q8N0Z6 440 aa10.45□□□□□ -0.74
BRCA1-208ENST00000468300 TMOD3Q9NYL9 352 aa10.45□□□□□ -0.74
BRCA1-208ENST00000468300 AFF2P51816 1311 aa10.44□□□□□ -0.74
BRCA1-208ENST00000468300 ONECUT3O60422 494 aaPredicted RBP10.44□□□□□ -0.74
BRCA1-208ENST00000468300 PIP4K2AP48426 406 aaPredicted RBP10.44□□□□□ -0.74
BRCA1-208ENST00000468300 BEND3Q5T5X7 828 aa10.44□□□□□ -0.74
BRCA1-208ENST00000468300 NHSQ6T4R5 1651 aa10.44□□□□□ -0.74
BRCA1-208ENST00000468300 PRIM1P49642 420 aaKnown RBP10.44□□□□□ -0.74
BRCA1-208ENST00000468300 COL5A3P25940 1745 aaPredicted RBP10.44□□□□□ -0.74
BRCA1-208ENST00000468300 BRWD3Q6RI45 1802 aa10.44□□□□□ -0.74
BRCA1-208ENST00000468300 PI4KAP2A4QPH2 592 aa10.43□□□□□ -0.74
BRCA1-208ENST00000468300 PI4KAP1Q8N8J0 262 aa10.43□□□□□ -0.74
BRCA1-208ENST00000468300 HYPKQ9NX55 129 aa10.43□□□□□ -0.74
BRCA1-208ENST00000468300 CCT4P50991 539 aaKnown RBP10.43□□□□□ -0.74
BRCA1-208ENST00000468300 USP44Q9H0E7 712 aa10.43□□□□□ -0.74
BRCA1-208ENST00000468300 TSHZ2Q9NRE2 1034 aa10.43□□□□□ -0.74
BRCA1-208ENST00000468300 PTCD1O75127 700 aaKnown RBP10.43□□□□□ -0.74
BRCA1-208ENST00000468300 SLC4A10Q6U841 1118 aa10.43□□□□□ -0.74
BRCA1-208ENST00000468300 GJD4Q96KN9 370 aaPredicted RBP10.43□□□□□ -0.74
BRCA1-208ENST00000468300 CCDC9Q9Y3X0 531 aaKnown RBP10.43□□□□□ -0.74
BRCA1-208ENST00000468300 DEKP35659 375 aaKnown RBP10.42□□□□□ -0.74
BRCA1-208ENST00000468300 PTF1AQ7RTS3 328 aa10.42□□□□□ -0.74
BRCA1-208ENST00000468300 BTAF1O14981 1849 aa10.42□□□□□ -0.74
BRCA1-208ENST00000468300 AFDNP55196 1824 aaKnown RBP10.42□□□□□ -0.74
BRCA1-208ENST00000468300 KCNQ2O43526 872 aa10.42□□□□□ -0.74
BRCA1-208ENST00000468300 SMC5Q8IY18 1101 aa10.42□□□□□ -0.74
BRCA1-208ENST00000468300 VSIG10Q8N0Z9 540 aa10.42□□□□□ -0.74
BRCA1-208ENST00000468300 MYL6BP14649 208 aa10.41□□□□□ -0.74
BRCA1-208ENST00000468300 RBM10P98175 930 aaKnown RBP10.41□□□□□ -0.74
BRCA1-208ENST00000468300 KSR2Q6VAB6 950 aa10.41□□□□□ -0.74
BRCA1-208ENST00000468300 DNAAF4Q8WXU2 420 aa10.41□□□□□ -0.74
BRCA1-208ENST00000468300 IBTKQ9P2D0 1353 aaPredicted RBP10.41□□□□□ -0.74
BRCA1-208ENST00000468300 A1BGP04217 495 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 1593.3 ms