RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 RAB3GAP1Q15042 981 aa22.15■■□□□ 1.14
CCDC88B-204ENST00000463837 PPP4R3BQ5MIZ7 849 aa22.15■■□□□ 1.14
CCDC88B-204ENST00000463837 ZMYND15Q9H091 742 aa22.15■■□□□ 1.14
CCDC88B-204ENST00000463837 ZKSCAN5Q9Y2L8 839 aa22.15■■□□□ 1.14
CCDC88B-204ENST00000463837 ADGRF5Q8IZF2 1346 aa22.15■■□□□ 1.14
CCDC88B-204ENST00000463837 GJB2P29033 226 aa22.15■■□□□ 1.14
CCDC88B-204ENST00000463837 IKQ13123 557 aaPredicted RBP22.15■■□□□ 1.14
CCDC88B-204ENST00000463837 CKAP2LQ8IYA6 745 aa22.15■■□□□ 1.14
CCDC88B-204ENST00000463837 CCDC171Q6TFL3 1326 aa22.15■■□□□ 1.14
CCDC88B-204ENST00000463837 CENPHQ9H3R5 247 aa22.14■■□□□ 1.14
CCDC88B-204ENST00000463837 MIS18AQ9NYP9 233 aa22.14■■□□□ 1.14
CCDC88B-204ENST00000463837 TCOF1Q13428 1488 aaKnown RBP22.14■■□□□ 1.14
CCDC88B-204ENST00000463837 PIK3C2GO75747 1445 aa22.14■■□□□ 1.13
CCDC88B-204ENST00000463837 LARP1Q6PKG0 1096 aaKnown RBP22.14■■□□□ 1.13
CCDC88B-204ENST00000463837 TMX3Q96JJ7 454 aa22.14■■□□□ 1.13
CCDC88B-204ENST00000463837 ZHX1Q9UKY1 873 aaPredicted RBP22.14■■□□□ 1.13
CCDC88B-204ENST00000463837 EIF2AK4Q9P2K8 1649 aaKnown RBP22.14■■□□□ 1.13
CCDC88B-204ENST00000463837 PANK2Q9BZ23 570 aa22.14■■□□□ 1.13
CCDC88B-204ENST00000463837 GRIN2AQ12879 1464 aa22.14■■□□□ 1.13
CCDC88B-204ENST00000463837 NUP133Q8WUM0 1156 aa22.14■■□□□ 1.13
CCDC88B-204ENST00000463837 SLC26A8Q96RN1 970 aa22.14■■□□□ 1.13
CCDC88B-204ENST00000463837 CRACR2AQ9BSW2 395 aa22.14■■□□□ 1.13
CCDC88B-204ENST00000463837 URI1O94763 535 aaPredicted RBP22.13■■□□□ 1.13
CCDC88B-204ENST00000463837 UBAC1Q9BSL1 405 aa22.13■■□□□ 1.13
CCDC88B-204ENST00000463837 FBXO3Q9UK99 471 aa22.13■■□□□ 1.13
CCDC88B-204ENST00000463837 PRAG1Q86YV5 1406 aa22.13■■□□□ 1.13
CCDC88B-204ENST00000463837 CNKSR2Q8WXI2 1034 aa22.13■■□□□ 1.13
CCDC88B-204ENST00000463837 LRRFIP2Q9Y608 721 aaKnown RBP22.13■■□□□ 1.13
CCDC88B-204ENST00000463837 ZSCAN22P10073 491 aaPredicted RBP22.13■■□□□ 1.13
CCDC88B-204ENST00000463837 C8orf76Q96K31 380 aa22.13■■□□□ 1.13
CCDC88B-204ENST00000463837 HMG20BQ9P0W2 317 aa22.13■■□□□ 1.13
CCDC88B-204ENST00000463837 KRT18P05783 430 aaKnown RBP22.12■■□□□ 1.13
CCDC88B-204ENST00000463837 MYL6BP14649 208 aa22.12■■□□□ 1.13
CCDC88B-204ENST00000463837 KIAA1328Q86T90 577 aa22.12■■□□□ 1.13
CCDC88B-204ENST00000463837 CCDC150Q8NCX0 1101 aa22.12■■□□□ 1.13
CCDC88B-204ENST00000463837 NUTM2BA6NNL0 878 aaPredicted RBP22.12■■□□□ 1.13
CCDC88B-204ENST00000463837 NUTM2EB1AL46 878 aaPredicted RBP22.12■■□□□ 1.13
CCDC88B-204ENST00000463837 NUTM2AQ8IVF1 878 aaPredicted RBP22.12■■□□□ 1.13
CCDC88B-204ENST00000463837 PLCD4Q9BRC7 762 aa22.12■■□□□ 1.13
CCDC88B-204ENST00000463837 C14orf93Q9H972 538 aaKnown RBP22.12■■□□□ 1.13
CCDC88B-204ENST00000463837 TRMT1Q9NXH9 659 aaKnown RBP22.12■■□□□ 1.13
CCDC88B-204ENST00000463837 AKAP2Q9Y2D5 859 aa22.12■■□□□ 1.13
CCDC88B-204ENST00000463837 BMS1Q14692 1282 aaKnown RBP22.12■■□□□ 1.13
CCDC88B-204ENST00000463837 SYCP1Q15431 976 aa22.12■■□□□ 1.13
CCDC88B-204ENST00000463837 PHAXQ9H814 394 aaKnown RBP22.11■■□□□ 1.13
CCDC88B-204ENST00000463837 ECHDC1Q9NTX5 307 aa22.11■■□□□ 1.13
CCDC88B-204ENST00000463837 ZNF165P49910 485 aa22.11■■□□□ 1.13
CCDC88B-204ENST00000463837 ZNF397Q8NF99 534 aaPredicted RBP22.11■■□□□ 1.13
CCDC88B-204ENST00000463837 DNAAF4Q8WXU2 420 aa22.11■■□□□ 1.13
CCDC88B-204ENST00000463837 TTC21BQ7Z4L5 1316 aa22.11■■□□□ 1.13
CCDC88B-204ENST00000463837 FAM107BQ9H098 131 aa22.11■■□□□ 1.13
CCDC88B-204ENST00000463837 MBIPQ9NS73 344 aa22.11■■□□□ 1.13
CCDC88B-204ENST00000463837 ARHGEF12Q9NZN5 1544 aa22.11■■□□□ 1.13
CCDC88B-204ENST00000463837 NOLC1Q14978 699 aaKnown RBP eCLIP22.1■■□□□ 1.13
CCDC88B-204ENST00000463837 LARP6Q9BRS8 491 aaKnown RBP22.1■■□□□ 1.13
CCDC88B-204ENST00000463837 INSRP06213 1382 aa22.1■■□□□ 1.13
CCDC88B-204ENST00000463837 JAKMIP3Q5VZ66 844 aa22.1■■□□□ 1.13
CCDC88B-204ENST00000463837 TANGO6Q9C0B7 1094 aa22.1■■□□□ 1.13
CCDC88B-204ENST00000463837 ZSCAN16Q9H4T2 348 aaPredicted RBP22.1■■□□□ 1.13
CCDC88B-204ENST00000463837 CFAP43Q8NDM7 1665 aa22.1■■□□□ 1.13
CCDC88B-204ENST00000463837 GPATCH8Q9UKJ3 1502 aaKnown RBP22.1■■□□□ 1.13
CCDC88B-204ENST00000463837 SPDYE4A6NLX3 237 aa22.1■■□□□ 1.13
CCDC88B-204ENST00000463837 FLIIQ13045 1269 aa22.1■■□□□ 1.13
CCDC88B-204ENST00000463837 ITSN2Q9NZM3 1697 aa22.09■■□□□ 1.13
CCDC88B-204ENST00000463837 EIF5P55010 431 aaKnown RBP22.09■■□□□ 1.13
CCDC88B-204ENST00000463837 SHTN1A0MZ66 631 aa22.09■■□□□ 1.13
CCDC88B-204ENST00000463837 TUBB4AP04350 444 aa22.09■■□□□ 1.13
CCDC88B-204ENST00000463837 CEP135Q66GS9 1140 aa22.09■■□□□ 1.13
CCDC88B-204ENST00000463837 FSIP1Q8NA03 581 aa22.09■■□□□ 1.13
CCDC88B-204ENST00000463837 CCDC196A0A1B0GTZ2 297 aa22.09■■□□□ 1.13
CCDC88B-204ENST00000463837 SDSP20132 328 aa22.09■■□□□ 1.13
CCDC88B-204ENST00000463837 SOGA3Q5TF21 947 aa22.09■■□□□ 1.13
CCDC88B-204ENST00000463837 KCNH5Q8NCM2 988 aa22.09■■□□□ 1.13
CCDC88B-204ENST00000463837 TRERF1Q96PN7 1200 aa22.08■■□□□ 1.13
CCDC88B-204ENST00000463837 BOLA2Q9H3K6 86 aa22.08■■□□□ 1.13
CCDC88B-204ENST00000463837 POLR3GO15318 223 aaPredicted RBP22.08■■□□□ 1.13
CCDC88B-204ENST00000463837 TDO2P48775 406 aa22.08■■□□□ 1.13
CCDC88B-204ENST00000463837 SNW1Q13573 536 aaKnown RBP22.08■■□□□ 1.13
CCDC88B-204ENST00000463837 F6X3S4 739 aa22.08■■□□□ 1.12
CCDC88B-204ENST00000463837 BMP2KQ9NSY1 1161 aaPredicted RBP22.08■■□□□ 1.12
CCDC88B-204ENST00000463837 DHX37Q8IY37 1157 aaKnown RBP22.07■■□□□ 1.12
CCDC88B-204ENST00000463837 KIF4BQ2VIQ3 1234 aa22.07■■□□□ 1.12
CCDC88B-204ENST00000463837 ANKRD44Q8N8A2 993 aa22.07■■□□□ 1.12
CCDC88B-204ENST00000463837 EMILIN1Q9Y6C2 1016 aa22.07■■□□□ 1.12
CCDC88B-204ENST00000463837 NOS1P29475 1434 aa22.07■■□□□ 1.12
CCDC88B-204ENST00000463837 HCLS1P14317 486 aaPredicted RBP22.07■■□□□ 1.12
CCDC88B-204ENST00000463837 AMOTQ4VCS5 1084 aa22.07■■□□□ 1.12
CCDC88B-204ENST00000463837 CD109Q6YHK3 1445 aa22.06■■□□□ 1.12
CCDC88B-204ENST00000463837 FAM200AQ8TCP9 573 aa22.06■■□□□ 1.12
CCDC88B-204ENST00000463837 TAF4BQ92750 862 aa22.06■■□□□ 1.12
CCDC88B-204ENST00000463837 RNF123Q5XPI4 1314 aa22.06■■□□□ 1.12
CCDC88B-204ENST00000463837 NME9Q86XW9 330 aa22.06■■□□□ 1.12
CCDC88B-204ENST00000463837 PIK3R4Q99570 1358 aa22.05■■□□□ 1.12
CCDC88B-204ENST00000463837 MPHOSPH8Q99549 860 aa22.05■■□□□ 1.12
CCDC88B-204ENST00000463837 AIDAQ96BJ3 306 aa22.05■■□□□ 1.12
CCDC88B-204ENST00000463837 SPA17Q15506 151 aa22.05■■□□□ 1.12
CCDC88B-204ENST00000463837 ZRSR2Q15696 482 aaKnown RBP22.05■■□□□ 1.12
CCDC88B-204ENST00000463837 HYPKQ9NX55 129 aa22.05■■□□□ 1.12
CCDC88B-204ENST00000463837 RBM25P49756 843 aaKnown RBP22.04■■□□□ 1.12
CCDC88B-204ENST00000463837 KRT222Q8N1A0 295 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms