RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 ARFGEF1Q9Y6D6 1849 aa16.73■□□□□ 0.27
HDAC4-207ENST00000461113 POTECB2RU33 542 aa16.73■□□□□ 0.27
HDAC4-207ENST00000461113 FKBP8Q14318 412 aa16.73■□□□□ 0.27
HDAC4-207ENST00000461113 EYA1Q99502 592 aa16.73■□□□□ 0.27
HDAC4-207ENST00000461113 KDM6AO15550 1401 aaPredicted RBP16.72■□□□□ 0.27
HDAC4-207ENST00000461113 PHKG2P15735 406 aa16.72■□□□□ 0.27
HDAC4-207ENST00000461113 CTCFP49711 727 aaPredicted RBP16.72■□□□□ 0.27
HDAC4-207ENST00000461113 IFNL2Q8IZJ0 200 aa16.72■□□□□ 0.27
HDAC4-207ENST00000461113 MYBBP1AQ9BQG0 1328 aaKnown RBP16.71■□□□□ 0.27
HDAC4-207ENST00000461113 U2SURPO15042 1029 aaKnown RBP16.71■□□□□ 0.27
HDAC4-207ENST00000461113 IL13P35225 146 aa16.71■□□□□ 0.27
HDAC4-207ENST00000461113 AIDAQ96BJ3 306 aa16.71■□□□□ 0.27
HDAC4-207ENST00000461113 PRKRIP1Q9H875 184 aaPredicted RBP16.7■□□□□ 0.26
HDAC4-207ENST00000461113 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.7■□□□□ 0.26
HDAC4-207ENST00000461113 CHADLQ6NUI6 762 aa16.69■□□□□ 0.26
HDAC4-207ENST00000461113 ABHD8Q96I13 439 aa16.69■□□□□ 0.26
HDAC4-207ENST00000461113 CNTNAP1P78357 1384 aa16.68■□□□□ 0.26
HDAC4-207ENST00000461113 POLRMTO00411 1230 aaKnown RBP16.68■□□□□ 0.26
HDAC4-207ENST00000461113 LBX1P52954 281 aa16.68■□□□□ 0.26
HDAC4-207ENST00000461113 SULT6B1Q6IMI4 303 aa16.68■□□□□ 0.26
HDAC4-207ENST00000461113 DPY19L2Q6NUT2 758 aa16.68■□□□□ 0.26
HDAC4-207ENST00000461113 USP42Q9H9J4 1324 aaKnown RBP16.68■□□□□ 0.26
HDAC4-207ENST00000461113 NCAPD2Q15021 1401 aa16.67■□□□□ 0.26
HDAC4-207ENST00000461113 NEFMP07197 916 aa16.66■□□□□ 0.26
HDAC4-207ENST00000461113 POTEIP0CG38 1075 aa16.66■□□□□ 0.26
HDAC4-207ENST00000461113 POTEJP0CG39 1038 aa16.66■□□□□ 0.26
HDAC4-207ENST00000461113 TM4SF1P30408 202 aa16.66■□□□□ 0.26
HDAC4-207ENST00000461113 PLEKHO1Q53GL0 409 aaPredicted RBP16.66■□□□□ 0.26
HDAC4-207ENST00000461113 SBF1O95248 1867 aa16.65■□□□□ 0.26
HDAC4-207ENST00000461113 ERVV-2B6SEH9 535 aa16.65■□□□□ 0.26
HDAC4-207ENST00000461113 NFKBIEO00221 500 aa16.65■□□□□ 0.26
HDAC4-207ENST00000461113 U2AF1L5P0DN76 240 aaPredicted RBP16.65■□□□□ 0.26
HDAC4-207ENST00000461113 CRKLP46109 303 aaKnown RBP16.65■□□□□ 0.26
HDAC4-207ENST00000461113 VEGFBP49765 207 aa16.65■□□□□ 0.26
HDAC4-207ENST00000461113 U2AF1Q01081 240 aaKnown RBP eCLIP16.65■□□□□ 0.26
HDAC4-207ENST00000461113 AMOTQ4VCS5 1084 aa16.65■□□□□ 0.26
HDAC4-207ENST00000461113 PNNQ9H307 717 aaKnown RBP16.65■□□□□ 0.26
HDAC4-207ENST00000461113 PTCD1O75127 700 aaKnown RBP16.64■□□□□ 0.25
HDAC4-207ENST00000461113 MLLT1Q03111 559 aaPredicted RBP16.64■□□□□ 0.25
HDAC4-207ENST00000461113 TTLL6Q8N841 843 aa16.64■□□□□ 0.25
HDAC4-207ENST00000461113 WBP1LQ9NX94 342 aa16.64■□□□□ 0.25
HDAC4-207ENST00000461113 HMOX1P09601 288 aa16.63■□□□□ 0.25
HDAC4-207ENST00000461113 WDR43Q15061 677 aaKnown RBP eCLIP16.62■□□□□ 0.25
HDAC4-207ENST00000461113 HSPA8P11142 646 aaKnown RBP16.61■□□□□ 0.25
HDAC4-207ENST00000461113 CABP4P57796 275 aa16.61■□□□□ 0.25
HDAC4-207ENST00000461113 ERFEQ4G0M1 354 aa16.61■□□□□ 0.25
HDAC4-207ENST00000461113 C1orf141Q5JVX7 400 aa16.61■□□□□ 0.25
HDAC4-207ENST00000461113 USPL1Q5W0Q7 1092 aa16.61■□□□□ 0.25
HDAC4-207ENST00000461113 AEBP1Q8IUX7 1158 aa16.61■□□□□ 0.25
HDAC4-207ENST00000461113 CCDC85CA6NKD9 419 aa16.6■□□□□ 0.25
HDAC4-207ENST00000461113 ZPR1O75312 459 aa16.6■□□□□ 0.25
HDAC4-207ENST00000461113 HSP90AB1P08238 724 aaKnown RBP16.6■□□□□ 0.25
HDAC4-207ENST00000461113 C2CD5Q86YS7 1000 aa16.6■□□□□ 0.25
HDAC4-207ENST00000461113 PASKQ96RG2 1323 aa16.6■□□□□ 0.25
HDAC4-207ENST00000461113 INTS5Q6P9B9 1019 aaKnown RBP16.59■□□□□ 0.25
HDAC4-207ENST00000461113 ZNF219Q9P2Y4 722 aaPredicted RBP16.59■□□□□ 0.25
HDAC4-207ENST00000461113 TMEM88BA6NKF7 163 aa16.58■□□□□ 0.24
HDAC4-207ENST00000461113 DDNO94850 711 aaPredicted RBP16.58■□□□□ 0.24
HDAC4-207ENST00000461113 RGS19P49795 217 aa16.58■□□□□ 0.24
HDAC4-207ENST00000461113 NFIXQ14938 502 aa16.58■□□□□ 0.24
HDAC4-207ENST00000461113 ZNF530Q6P9A1 599 aaPredicted RBP16.58■□□□□ 0.24
HDAC4-207ENST00000461113 ZNF831Q5JPB2 1677 aa16.58■□□□□ 0.24
HDAC4-207ENST00000461113 COL5A3P25940 1745 aaPredicted RBP16.58■□□□□ 0.24
HDAC4-207ENST00000461113 COL3A1P02461 1466 aaPredicted RBP16.57■□□□□ 0.24
HDAC4-207ENST00000461113 H0YIN7 160 aa16.57■□□□□ 0.24
HDAC4-207ENST00000461113 GAS2L2Q8NHY3 880 aa16.57■□□□□ 0.24
HDAC4-207ENST00000461113 SERPINB2P05120 415 aa16.56■□□□□ 0.24
HDAC4-207ENST00000461113 PRKAR2BP31323 418 aa16.56■□□□□ 0.24
HDAC4-207ENST00000461113 DIEXFQ68CQ4 756 aaKnown RBP16.56■□□□□ 0.24
HDAC4-207ENST00000461113 TIAM2Q8IVF5 1701 aa16.56■□□□□ 0.24
HDAC4-207ENST00000461113 MYH14Q7Z406 1995 aaKnown RBP16.55■□□□□ 0.24
HDAC4-207ENST00000461113 MAPK8IP3Q9UPT6 1336 aa16.55■□□□□ 0.24
HDAC4-207ENST00000461113 C21orf2O43822 256 aa16.55■□□□□ 0.24
HDAC4-207ENST00000461113 LDHDQ86WU2 507 aa16.55■□□□□ 0.24
HDAC4-207ENST00000461113 MRS2Q9HD23 443 aa16.55■□□□□ 0.24
HDAC4-207ENST00000461113 ITGBL1O95965 494 aaPredicted RBP16.54■□□□□ 0.24
HDAC4-207ENST00000461113 NFATC2IPQ8NCF5 419 aa16.54■□□□□ 0.24
HDAC4-207ENST00000461113 RSPH6AQ9H0K4 717 aa16.54■□□□□ 0.24
HDAC4-207ENST00000461113 MAP2K1Q02750 393 aaPredicted RBP16.53■□□□□ 0.24
HDAC4-207ENST00000461113 DEFB115Q30KQ5 88 aa16.53■□□□□ 0.24
HDAC4-207ENST00000461113 AKAP4Q5JQC9 854 aa16.53■□□□□ 0.24
HDAC4-207ENST00000461113 ZNF622Q969S3 477 aaKnown RBP eCLIP16.53■□□□□ 0.24
HDAC4-207ENST00000461113 NARFQ9UHQ1 456 aa16.53■□□□□ 0.24
HDAC4-207ENST00000461113 CARMIL3Q8ND23 1372 aa16.52■□□□□ 0.24
HDAC4-207ENST00000461113 SOS1Q07889 1333 aaPredicted RBP16.52■□□□□ 0.24
HDAC4-207ENST00000461113 IQCA1LA6NCM1 817 aa16.52■□□□□ 0.24
HDAC4-207ENST00000461113 DNAJC10Q8IXB1 793 aa16.52■□□□□ 0.24
HDAC4-207ENST00000461113 TAF1DQ9H5J8 278 aaPredicted RBP16.52■□□□□ 0.24
HDAC4-207ENST00000461113 BCL2L12Q9HB09 334 aa16.52■□□□□ 0.24
HDAC4-207ENST00000461113 WDR33Q9C0J8 1336 aaKnown RBP16.51■□□□□ 0.23
HDAC4-207ENST00000461113 RASSF10A6NK89 507 aa16.51■□□□□ 0.23
HDAC4-207ENST00000461113 MTHFSDQ2M296 383 aaKnown RBP16.51■□□□□ 0.23
HDAC4-207ENST00000461113 EAPPQ56P03 285 aaPredicted RBP16.51■□□□□ 0.23
HDAC4-207ENST00000461113 RTF1Q92541 710 aaKnown RBP16.51■□□□□ 0.23
HDAC4-207ENST00000461113 CFAP44Q96MT7 982 aa16.5■□□□□ 0.23
HDAC4-207ENST00000461113 TAOK3Q9H2K8 898 aa16.5■□□□□ 0.23
HDAC4-207ENST00000461113 CLEC11AQ9Y240 323 aa16.5■□□□□ 0.23
HDAC4-207ENST00000461113 LTBP3Q9NS15 1303 aa16.49■□□□□ 0.23
HDAC4-207ENST00000461113 GNAT3A8MTJ3 354 aa16.49■□□□□ 0.23
HDAC4-207ENST00000461113 BICDL1Q6ZP65 573 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms