RNA–Protein interactions for RNA: ENST00000458038.5

CPNE1-220, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-220ENST00000458038 TOMM70O94826 608 aa29.01■■■□□ 2.23
CPNE1-220ENST00000458038 TTC5Q8N0Z6 440 aa29.01■■■□□ 2.23
CPNE1-220ENST00000458038 COL15A1P39059 1388 aa29.01■■■□□ 2.23
CPNE1-220ENST00000458038 STARD3NLO95772 234 aa29■■■□□ 2.23
CPNE1-220ENST00000458038 GAS2L2Q8NHY3 880 aa29■■■□□ 2.23
CPNE1-220ENST00000458038 UBR2Q8IWV8 1755 aa28.99■■■□□ 2.23
CPNE1-220ENST00000458038 C9orf131Q5VYM1 1079 aa28.99■■■□□ 2.23
CPNE1-220ENST00000458038 ZBTB1Q9Y2K1 713 aa28.99■■■□□ 2.23
CPNE1-220ENST00000458038 GNAT3A8MTJ3 354 aa28.98■■■□□ 2.23
CPNE1-220ENST00000458038 TEX13AQ9BXU3 409 aaPredicted RBP28.98■■■□□ 2.23
CPNE1-220ENST00000458038 U2SURPO15042 1029 aaKnown RBP28.97■■■□□ 2.23
CPNE1-220ENST00000458038 TEFQ10587 303 aa28.97■■■□□ 2.23
CPNE1-220ENST00000458038 NFIXQ14938 502 aa28.97■■■□□ 2.23
CPNE1-220ENST00000458038 COL3A1P02461 1466 aaPredicted RBP28.97■■■□□ 2.23
CPNE1-220ENST00000458038 A0A087WZG4 1122 aa28.96■■■□□ 2.23
CPNE1-220ENST00000458038 CHRNA5P30532 468 aa28.96■■■□□ 2.23
CPNE1-220ENST00000458038 AFDNP55196 1824 aaKnown RBP28.96■■■□□ 2.23
CPNE1-220ENST00000458038 NRXN2Q9P2S2 1712 aa28.94■■■□□ 2.22
CPNE1-220ENST00000458038 APLP1P51693 650 aa28.93■■■□□ 2.22
CPNE1-220ENST00000458038 EIF5P55010 431 aaKnown RBP28.93■■■□□ 2.22
CPNE1-220ENST00000458038 ZNF790Q6PG37 636 aa28.93■■■□□ 2.22
CPNE1-220ENST00000458038 SBF1O95248 1867 aa28.93■■■□□ 2.22
CPNE1-220ENST00000458038 KDM2BQ8NHM5 1336 aa28.93■■■□□ 2.22
CPNE1-220ENST00000458038 SERPINB2P05120 415 aa28.92■■■□□ 2.22
CPNE1-220ENST00000458038 CANXP27824 592 aaKnown RBP28.92■■■□□ 2.22
CPNE1-220ENST00000458038 IL17REQ8NFR9 667 aa28.92■■■□□ 2.22
CPNE1-220ENST00000458038 CFAP53Q96M91 514 aa28.92■■■□□ 2.22
CPNE1-220ENST00000458038 BCL2L12Q9HB09 334 aa28.91■■■□□ 2.22
CPNE1-220ENST00000458038 NMRK2Q9NPI5 230 aa28.91■■■□□ 2.22
CPNE1-220ENST00000458038 RNF181Q9P0P0 153 aa28.91■■■□□ 2.22
CPNE1-220ENST00000458038 HEG1Q9ULI3 1381 aa28.9■■■□□ 2.22
CPNE1-220ENST00000458038 ZNF496Q96IT1 587 aaPredicted RBP28.9■■■□□ 2.22
CPNE1-220ENST00000458038 C16orf71Q8IYS4 520 aaPredicted RBP28.89■■■□□ 2.22
CPNE1-220ENST00000458038 RBM46Q8TBY0 533 aaKnown RBP28.89■■■□□ 2.22
CPNE1-220ENST00000458038 ZC3H4Q9UPT8 1303 aaKnown RBP28.89■■■□□ 2.21
CPNE1-220ENST00000458038 SIPA1L3O60292 1781 aaPredicted RBP28.88■■■□□ 2.21
CPNE1-220ENST00000458038 PDZRN3Q9UPQ7 1066 aa28.88■■■□□ 2.21
CPNE1-220ENST00000458038 TTLL6Q8N841 843 aa28.87■■■□□ 2.21
CPNE1-220ENST00000458038 FMNL2Q96PY5 1086 aa28.87■■■□□ 2.21
CPNE1-220ENST00000458038 NUDCQ9Y266 331 aa28.87■■■□□ 2.21
CPNE1-220ENST00000458038 CEMIPQ8WUJ3 1361 aa28.87■■■□□ 2.21
CPNE1-220ENST00000458038 DLEC1Q9Y238 1755 aa28.86■■■□□ 2.21
CPNE1-220ENST00000458038 H0YIN7 160 aa28.86■■■□□ 2.21
CPNE1-220ENST00000458038 CNGB1Q14028 1251 aaPredicted RBP28.86■■■□□ 2.21
CPNE1-220ENST00000458038 NPM2Q86SE8 214 aaKnown RBP28.86■■■□□ 2.21
CPNE1-220ENST00000458038 IL6STP40189 918 aaPredicted RBP28.85■■■□□ 2.21
CPNE1-220ENST00000458038 FSTL1Q12841 308 aa28.83■■■□□ 2.21
CPNE1-220ENST00000458038 IFFO2Q5TF58 517 aa28.83■■■□□ 2.21
CPNE1-220ENST00000458038 C2CD5Q86YS7 1000 aa28.83■■■□□ 2.21
CPNE1-220ENST00000458038 LMNB1P20700 586 aa28.82■■■□□ 2.2
CPNE1-220ENST00000458038 PRKAR2BP31323 418 aa28.82■■■□□ 2.2
CPNE1-220ENST00000458038 RSPH6AQ9H0K4 717 aa28.82■■■□□ 2.2
CPNE1-220ENST00000458038 BICDL1Q6ZP65 573 aa28.81■■■□□ 2.2
CPNE1-220ENST00000458038 TNRC6CQ9HCJ0 1690 aaKnown RBP28.8■■■□□ 2.2
CPNE1-220ENST00000458038 BTBD11A6QL63 1104 aa28.8■■■□□ 2.2
CPNE1-220ENST00000458038 PDE6BP35913 854 aa28.8■■■□□ 2.2
CPNE1-220ENST00000458038 PHACTR3Q96KR7 559 aa28.8■■■□□ 2.2
CPNE1-220ENST00000458038 BRIP1Q9BX63 1249 aa28.8■■■□□ 2.2
CPNE1-220ENST00000458038 TBC1D9BQ66K14 1250 aa28.79■■■□□ 2.2
CPNE1-220ENST00000458038 CARMIL3Q8ND23 1372 aa28.78■■■□□ 2.2
CPNE1-220ENST00000458038 SCN7AQ01118 1682 aa28.78■■■□□ 2.2
CPNE1-220ENST00000458038 RRAGCQ9HB90 399 aa28.78■■■□□ 2.2
CPNE1-220ENST00000458038 TBC1D2BQ9UPU7 963 aa28.78■■■□□ 2.2
CPNE1-220ENST00000458038 DNAJC5GQ8N7S2 189 aa28.77■■■□□ 2.2
CPNE1-220ENST00000458038 RTF1Q92541 710 aaKnown RBP28.77■■■□□ 2.2
CPNE1-220ENST00000458038 SETDB2Q96T68 719 aa28.77■■■□□ 2.2
CPNE1-220ENST00000458038 ZNF330Q9Y3S2 320 aaPredicted RBP28.77■■■□□ 2.2
CPNE1-220ENST00000458038 A1BGP04217 495 aa28.76■■■□□ 2.19
CPNE1-220ENST00000458038 RASSF7Q02833 373 aa28.76■■■□□ 2.19
CPNE1-220ENST00000458038 CCDC88AQ3V6T2 1871 aa28.76■■■□□ 2.19
CPNE1-220ENST00000458038 U2AF1L5P0DN76 240 aaPredicted RBP28.75■■■□□ 2.19
CPNE1-220ENST00000458038 U2AF1Q01081 240 aaKnown RBP eCLIP28.75■■■□□ 2.192e-6■□□□□ 8.5
CPNE1-220ENST00000458038 HTATSF1O43719 755 aaKnown RBP28.74■■■□□ 2.19
CPNE1-220ENST00000458038 PRR5LQ6MZQ0 368 aa28.74■■■□□ 2.19
CPNE1-220ENST00000458038 GLTPD2A6NH11 291 aa28.73■■■□□ 2.19
CPNE1-220ENST00000458038 PPP2R1AP30153 589 aa28.73■■■□□ 2.19
CPNE1-220ENST00000458038 ANKRD31Q8N7Z5 1873 aa28.73■■■□□ 2.19
CPNE1-220ENST00000458038 CAMTA2O94983 1202 aa28.72■■■□□ 2.19
CPNE1-220ENST00000458038 CLEC4GQ6UXB4 293 aa28.72■■■□□ 2.19
CPNE1-220ENST00000458038 ZNF622Q969S3 477 aaKnown RBP eCLIP28.72■■■□□ 2.197e-8■■■□□ 16.9
CPNE1-220ENST00000458038 WDR90Q96KV7 1748 aa28.72■■■□□ 2.19
CPNE1-220ENST00000458038 KCNQ3O43525 872 aa28.71■■■□□ 2.19
CPNE1-220ENST00000458038 SNRPA1P09661 255 aaKnown RBP28.71■■■□□ 2.19
CPNE1-220ENST00000458038 VEGFAP15692 232 aaPredicted RBP28.71■■■□□ 2.19
CPNE1-220ENST00000458038 DZIP3Q86Y13 1208 aaKnown RBP28.71■■■□□ 2.19
CPNE1-220ENST00000458038 SMC1BQ8NDV3 1235 aa28.71■■■□□ 2.19
CPNE1-220ENST00000458038 NPHP1O15259 732 aa28.7■■■□□ 2.18
CPNE1-220ENST00000458038 CNBD1Q8NA66 436 aa28.7■■■□□ 2.18
CPNE1-220ENST00000458038 USP16Q9Y5T5 823 aa28.7■■■□□ 2.18
CPNE1-220ENST00000458038 NFKBIEO00221 500 aa28.69■■■□□ 2.18
CPNE1-220ENST00000458038 RGL2O15211 777 aa28.69■■■□□ 2.18
CPNE1-220ENST00000458038 ST5P78524 1137 aa28.69■■■□□ 2.18
CPNE1-220ENST00000458038 CNKSR1Q969H4 720 aa28.69■■■□□ 2.18
CPNE1-220ENST00000458038 DPY19L2Q6NUT2 758 aa28.68■■■□□ 2.18
CPNE1-220ENST00000458038 ZNF652Q9Y2D9 606 aa28.68■■■□□ 2.18
CPNE1-220ENST00000458038 PRELPP51888 382 aa28.67■■■□□ 2.18
CPNE1-220ENST00000458038 STYK1Q6J9G0 422 aa28.67■■■□□ 2.18
CPNE1-220ENST00000458038 BCORQ6W2J9 1755 aa28.67■■■□□ 2.18
CPNE1-220ENST00000458038 DICER1Q9UPY3 1922 aaKnown RBP28.67■■■□□ 2.18
CPNE1-220ENST00000458038 FER1L6Q2WGJ9 1857 aa28.66■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms