RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 USPL1Q5W0Q7 1092 aa17.16■□□□□ 0.34
CHD3-206ENST00000452447 N4BP2Q86UW6 1770 aaPredicted RBP17.16■□□□□ 0.34
CHD3-206ENST00000452447 C10orf71Q711Q0 1435 aa17.16■□□□□ 0.34
CHD3-206ENST00000452447 A0A0G2JLW4 131 aa17.15■□□□□ 0.34
CHD3-206ENST00000452447 FMNL2Q96PY5 1086 aa17.15■□□□□ 0.34
CHD3-206ENST00000452447 NARFQ9UHQ1 456 aa17.15■□□□□ 0.34
CHD3-206ENST00000452447 COL15A1P39059 1388 aa17.15■□□□□ 0.34
CHD3-206ENST00000452447 HEG1Q9ULI3 1381 aa17.15■□□□□ 0.34
CHD3-206ENST00000452447 PXDNLA1KZ92 1463 aa17.15■□□□□ 0.34
CHD3-206ENST00000452447 BCS1LQ9Y276 419 aa17.14■□□□□ 0.33
CHD3-206ENST00000452447 DPEP1P16444 411 aa17.13■□□□□ 0.33
CHD3-206ENST00000452447 DDR1Q08345 913 aa17.13■□□□□ 0.33
CHD3-206ENST00000452447 MCM10Q7L590 875 aa17.13■□□□□ 0.33
CHD3-206ENST00000452447 A0A087WZG4 1122 aa17.12■□□□□ 0.33
CHD3-206ENST00000452447 HTATSF1O43719 755 aaKnown RBP17.12■□□□□ 0.33
CHD3-206ENST00000452447 TM4SF1P30408 202 aa17.12■□□□□ 0.33
CHD3-206ENST00000452447 NPM2Q86SE8 214 aaKnown RBP17.12■□□□□ 0.33
CHD3-206ENST00000452447 ZNF330Q9Y3S2 320 aaPredicted RBP17.12■□□□□ 0.33
CHD3-206ENST00000452447 POLRMTO00411 1230 aaKnown RBP17.11■□□□□ 0.33
CHD3-206ENST00000452447 KIAA1551Q9HCM1 1747 aa17.11■□□□□ 0.33
CHD3-206ENST00000452447 KCNQ3O43525 872 aa17.11■□□□□ 0.33
CHD3-206ENST00000452447 EIF5P55010 431 aaKnown RBP17.11■□□□□ 0.33
CHD3-206ENST00000452447 DCTN1Q14203 1278 aa17.11■□□□□ 0.33
CHD3-206ENST00000452447 DDX10Q13206 875 aaKnown RBP17.1■□□□□ 0.33
CHD3-206ENST00000452447 NFIXQ14938 502 aa17.1■□□□□ 0.33
CHD3-206ENST00000452447 RALBP1Q15311 655 aa17.1■□□□□ 0.33
CHD3-206ENST00000452447 PNNQ9H307 717 aaKnown RBP17.1■□□□□ 0.33
CHD3-206ENST00000452447 BRCA1P38398 1863 aaKnown RBP17.09■□□□□ 0.33
CHD3-206ENST00000452447 GIGYF1O75420 1035 aaPredicted RBP17.09■□□□□ 0.33
CHD3-206ENST00000452447 IL6STP40189 918 aaPredicted RBP17.09■□□□□ 0.33
CHD3-206ENST00000452447 PIM2Q9P1W9 311 aa17.09■□□□□ 0.33
CHD3-206ENST00000452447 DLG5Q8TDM6 1919 aa17.08■□□□□ 0.33
CHD3-206ENST00000452447 BCL2L12Q9HB09 334 aa17.08■□□□□ 0.32
CHD3-206ENST00000452447 AFDNP55196 1824 aaKnown RBP17.08■□□□□ 0.32
CHD3-206ENST00000452447 ATP10DQ9P241 1426 aa17.08■□□□□ 0.32
CHD3-206ENST00000452447 A1BGP04217 495 aa17.07■□□□□ 0.32
CHD3-206ENST00000452447 SERPINB2P05120 415 aa17.07■□□□□ 0.32
CHD3-206ENST00000452447 TAF7Q15545 349 aaPredicted RBP17.07■□□□□ 0.32
CHD3-206ENST00000452447 ARHGAP27Q6ZUM4 889 aa17.07■□□□□ 0.32
CHD3-206ENST00000452447 MAPK8IP3Q9UPT6 1336 aa17.07■□□□□ 0.32
CHD3-206ENST00000452447 SNRPA1P09661 255 aaKnown RBP17.06■□□□□ 0.32
CHD3-206ENST00000452447 KCNA3P22001 575 aa17.06■□□□□ 0.32
CHD3-206ENST00000452447 C1QTNF8P60827 252 aa17.06■□□□□ 0.32
CHD3-206ENST00000452447 DALRD3Q5D0E6 543 aaKnown RBP17.06■□□□□ 0.32
CHD3-206ENST00000452447 BICDL1Q6ZP65 573 aa17.06■□□□□ 0.32
CHD3-206ENST00000452447 TBC1D2BQ9UPU7 963 aa17.06■□□□□ 0.32
CHD3-206ENST00000452447 USP16Q9Y5T5 823 aa17.06■□□□□ 0.32
CHD3-206ENST00000452447 PLEKHF1Q96S99 279 aa17.06■□□□□ 0.32
CHD3-206ENST00000452447 GPBP1L1Q9HC44 474 aaPredicted RBP17.06■□□□□ 0.32
CHD3-206ENST00000452447 ARFGEF1Q9Y6D6 1849 aa17.05■□□□□ 0.32
CHD3-206ENST00000452447 CHRNA5P30532 468 aa17.05■□□□□ 0.32
CHD3-206ENST00000452447 NFE2L2Q16236 605 aa17.05■□□□□ 0.32
CHD3-206ENST00000452447 ADCY9O60503 1353 aa17.05■□□□□ 0.32
CHD3-206ENST00000452447 ZNF526Q8TF50 670 aaPredicted RBP17.04■□□□□ 0.32
CHD3-206ENST00000452447 PRAMEF22A3QJZ6 481 aa17.03■□□□□ 0.32
CHD3-206ENST00000452447 TBC1D9BQ66K14 1250 aa17.03■□□□□ 0.32
CHD3-206ENST00000452447 PNISRQ8TF01 805 aaKnown RBP17.03■□□□□ 0.32
CHD3-206ENST00000452447 MIS18AQ9NYP9 233 aa17.03■□□□□ 0.32
CHD3-206ENST00000452447 NRXN2Q9P2S2 1712 aa17.03■□□□□ 0.32
CHD3-206ENST00000452447 PIP4K2AP48426 406 aaPredicted RBP17.02■□□□□ 0.32
CHD3-206ENST00000452447 DZIP3Q86Y13 1208 aaKnown RBP17.02■□□□□ 0.32
CHD3-206ENST00000452447 SCN7AQ01118 1682 aa17.01■□□□□ 0.31
CHD3-206ENST00000452447 MYBBP1AQ9BQG0 1328 aaKnown RBP17.01■□□□□ 0.31
CHD3-206ENST00000452447 NPHP1O15259 732 aa17.01■□□□□ 0.31
CHD3-206ENST00000452447 CAMTA2O94983 1202 aa17.01■□□□□ 0.31
CHD3-206ENST00000452447 SETDB2Q96T68 719 aa17.01■□□□□ 0.31
CHD3-206ENST00000452447 CARMIL3Q8ND23 1372 aa17■□□□□ 0.31
CHD3-206ENST00000452447 H0YIN7 160 aa17■□□□□ 0.31
CHD3-206ENST00000452447 C2CD5Q86YS7 1000 aa16.99■□□□□ 0.31
CHD3-206ENST00000452447 THUMPD2Q9BTF0 503 aaKnown RBP16.99■□□□□ 0.31
CHD3-206ENST00000452447 SENP3-EIF4A1A0A087X0R7 540 aa16.98■□□□□ 0.31
CHD3-206ENST00000452447 ZNF652Q9Y2D9 606 aa16.98■□□□□ 0.31
CHD3-206ENST00000452447 PDE6BP35913 854 aa16.98■□□□□ 0.31
CHD3-206ENST00000452447 RIPK4P57078 832 aa16.98■□□□□ 0.31
CHD3-206ENST00000452447 CLEC4GQ6UXB4 293 aa16.98■□□□□ 0.31
CHD3-206ENST00000452447 TTLL6Q8N841 843 aa16.98■□□□□ 0.31
CHD3-206ENST00000452447 BCORQ6W2J9 1755 aa16.97■□□□□ 0.31
CHD3-206ENST00000452447 KDM3BQ7LBC6 1761 aa16.97■□□□□ 0.31
CHD3-206ENST00000452447 DLEC1Q9Y238 1755 aa16.97■□□□□ 0.31
CHD3-206ENST00000452447 NBPF26B4DH59 902 aa16.97■□□□□ 0.31
CHD3-206ENST00000452447 C9orf131Q5VYM1 1079 aa16.97■□□□□ 0.31
CHD3-206ENST00000452447 PRR5LQ6MZQ0 368 aa16.97■□□□□ 0.31
CHD3-206ENST00000452447 NBPF10Q6P3W6 841 aaKnown RBP16.97■□□□□ 0.31
CHD3-206ENST00000452447 NBPF15Q8N660 670 aa16.97■□□□□ 0.31
CHD3-206ENST00000452447 CNBD1Q8NA66 436 aa16.97■□□□□ 0.31
CHD3-206ENST00000452447 BRIP1Q9BX63 1249 aa16.97■□□□□ 0.31
CHD3-206ENST00000452447 PDZRN3Q9UPQ7 1066 aa16.97■□□□□ 0.31
CHD3-206ENST00000452447 ST5P78524 1137 aa16.96■□□□□ 0.31
CHD3-206ENST00000452447 WDR43Q15061 677 aaKnown RBP eCLIP16.96■□□□□ 0.31
CHD3-206ENST00000452447 CCDC24Q8N4L8 307 aa16.96■□□□□ 0.31
CHD3-206ENST00000452447 LAMB4A4D0S4 1761 aa16.96■□□□□ 0.3
CHD3-206ENST00000452447 EIF4A1P60842 406 aaKnown RBP16.95■□□□□ 0.3
CHD3-206ENST00000452447 LMOD3Q0VAK6 560 aa16.95■□□□□ 0.3
CHD3-206ENST00000452447 ZNF622Q969S3 477 aaKnown RBP eCLIP16.95■□□□□ 0.31e-6■■■□□ 18.5
CHD3-206ENST00000452447 SBF1O95248 1867 aa16.95■□□□□ 0.3
CHD3-206ENST00000452447 ANKRD31Q8N7Z5 1873 aa16.95■□□□□ 0.3
CHD3-206ENST00000452447 TMPOP42166 694 aaKnown RBP16.94■□□□□ 0.3
CHD3-206ENST00000452447 NBPF5PQ86XG9 351 aaPredicted RBP16.94■□□□□ 0.3
CHD3-206ENST00000452447 RNF181Q9P0P0 153 aa16.94■□□□□ 0.3
CHD3-206ENST00000452447 TSPYL4Q9UJ04 414 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms