RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 BTBD11A6QL63 1104 aa22.58■■□□□ 1.21
PRPF40A-204ENST00000450303 USPL1Q5W0Q7 1092 aa22.58■■□□□ 1.21
PRPF40A-204ENST00000450303 GRIN3BO60391 1043 aa22.57■■□□□ 1.2
PRPF40A-204ENST00000450303 ZPR1O75312 459 aa22.57■■□□□ 1.2
PRPF40A-204ENST00000450303 HEG1Q9ULI3 1381 aa22.57■■□□□ 1.2
PRPF40A-204ENST00000450303 UTRNP46939 3433 aa22.57■■□□□ 1.2
PRPF40A-204ENST00000450303 MIER1Q8N108 512 aa22.56■■□□□ 1.2
PRPF40A-204ENST00000450303 N4BP2Q86UW6 1770 aaPredicted RBP22.55■■□□□ 1.2
PRPF40A-204ENST00000450303 STARD3NLO95772 234 aa22.55■■□□□ 1.2
PRPF40A-204ENST00000450303 ZNF784Q8NCA9 323 aaPredicted RBP22.55■■□□□ 1.2
PRPF40A-204ENST00000450303 FMNL2Q96PY5 1086 aa22.55■■□□□ 1.2
PRPF40A-204ENST00000450303 DLG5Q8TDM6 1919 aa22.55■■□□□ 1.2
PRPF40A-204ENST00000450303 KIF13BQ9NQT8 1826 aa22.54■■□□□ 1.2
PRPF40A-204ENST00000450303 COL15A1P39059 1388 aa22.54■■□□□ 1.2
PRPF40A-204ENST00000450303 NEFMP07197 916 aa22.54■■□□□ 1.2
PRPF40A-204ENST00000450303 DDR1Q08345 913 aa22.54■■□□□ 1.2
PRPF40A-204ENST00000450303 A0A0G2JLW4 131 aa22.53■■□□□ 1.2
PRPF40A-204ENST00000450303 PLEKHF1Q96S99 279 aa22.53■■□□□ 1.2
PRPF40A-204ENST00000450303 NARFQ9UHQ1 456 aa22.53■■□□□ 1.2
PRPF40A-204ENST00000450303 CCER2I3L3R5 266 aa22.52■■□□□ 1.2
PRPF40A-204ENST00000450303 TEX13AQ9BXU3 409 aaPredicted RBP22.52■■□□□ 1.2
PRPF40A-204ENST00000450303 ZNF330Q9Y3S2 320 aaPredicted RBP22.52■■□□□ 1.2
PRPF40A-204ENST00000450303 PXDNLA1KZ92 1463 aa22.52■■□□□ 1.2
PRPF40A-204ENST00000450303 KIAA1551Q9HCM1 1747 aa22.51■■□□□ 1.19
PRPF40A-204ENST00000450303 C10orf71Q711Q0 1435 aa22.51■■□□□ 1.19
PRPF40A-204ENST00000450303 HTATSF1O43719 755 aaKnown RBP22.51■■□□□ 1.19
PRPF40A-204ENST00000450303 A1BGP04217 495 aa22.51■■□□□ 1.19
PRPF40A-204ENST00000450303 TM4SF1P30408 202 aa22.51■■□□□ 1.19
PRPF40A-204ENST00000450303 PRAMEF22A3QJZ6 481 aa22.5■■□□□ 1.19
PRPF40A-204ENST00000450303 EIF5P55010 431 aaKnown RBP22.5■■□□□ 1.19
PRPF40A-204ENST00000450303 TGFB2P61812 414 aa22.5■■□□□ 1.19
PRPF40A-204ENST00000450303 BCL2L12Q9HB09 334 aa22.5■■□□□ 1.19
PRPF40A-204ENST00000450303 MIS18AQ9NYP9 233 aa22.5■■□□□ 1.19
PRPF40A-204ENST00000450303 GOLGB1Q14789 3259 aaKnown RBP22.5■■□□□ 1.19
PRPF40A-204ENST00000450303 POLRMTO00411 1230 aaKnown RBP22.49■■□□□ 1.19
PRPF40A-204ENST00000450303 DPEP1P16444 411 aa22.49■■□□□ 1.19
PRPF40A-204ENST00000450303 USP16Q9Y5T5 823 aa22.49■■□□□ 1.19
PRPF40A-204ENST00000450303 PIP4K2AP48426 406 aaPredicted RBP22.48■■□□□ 1.19
PRPF40A-204ENST00000450303 NFIXQ14938 502 aa22.48■■□□□ 1.19
PRPF40A-204ENST00000450303 TAF7Q15545 349 aaPredicted RBP22.48■■□□□ 1.19
PRPF40A-204ENST00000450303 NFE2L2Q16236 605 aa22.48■■□□□ 1.19
PRPF40A-204ENST00000450303 MAPK8IP3Q9UPT6 1336 aa22.48■■□□□ 1.19
PRPF40A-204ENST00000450303 THUMPD2Q9BTF0 503 aaKnown RBP22.47■■□□□ 1.19
PRPF40A-204ENST00000450303 PNNQ9H307 717 aaKnown RBP22.47■■□□□ 1.19
PRPF40A-204ENST00000450303 TBC1D2BQ9UPU7 963 aa22.47■■□□□ 1.19
PRPF40A-204ENST00000450303 A0A087WZG4 1122 aa22.46■■□□□ 1.19
PRPF40A-204ENST00000450303 BICDL1Q6ZP65 573 aa22.46■■□□□ 1.19
PRPF40A-204ENST00000450303 MRS2Q9HD23 443 aa22.46■■□□□ 1.19
PRPF40A-204ENST00000450303 BCS1LQ9Y276 419 aa22.46■■□□□ 1.19
PRPF40A-204ENST00000450303 AFDNP55196 1824 aaKnown RBP22.45■■□□□ 1.19
PRPF40A-204ENST00000450303 SNRPA1P09661 255 aaKnown RBP22.44■■□□□ 1.18
PRPF40A-204ENST00000450303 IL6STP40189 918 aaPredicted RBP22.44■■□□□ 1.18
PRPF40A-204ENST00000450303 SERPINB2P05120 415 aa22.43■■□□□ 1.18
PRPF40A-204ENST00000450303 KCNA3P22001 575 aa22.43■■□□□ 1.18
PRPF40A-204ENST00000450303 CHRNA5P30532 468 aa22.43■■□□□ 1.18
PRPF40A-204ENST00000450303 NPM2Q86SE8 214 aaKnown RBP22.42■■□□□ 1.18
PRPF40A-204ENST00000450303 BRCA1P38398 1863 aaKnown RBP22.41■■□□□ 1.18
PRPF40A-204ENST00000450303 TBC1D9BQ66K14 1250 aa22.41■■□□□ 1.18
PRPF40A-204ENST00000450303 CCDC146Q8IYE0 955 aa22.41■■□□□ 1.18
PRPF40A-204ENST00000450303 CENPBP07199 599 aaPredicted RBP22.4■■□□□ 1.18
PRPF40A-204ENST00000450303 RIPK4P57078 832 aa22.4■■□□□ 1.18
PRPF40A-204ENST00000450303 DZIP3Q86Y13 1208 aaKnown RBP22.39■■□□□ 1.17
PRPF40A-204ENST00000450303 PNISRQ8TF01 805 aaKnown RBP22.39■■□□□ 1.17
PRPF40A-204ENST00000450303 PIM2Q9P1W9 311 aa22.39■■□□□ 1.17
PRPF40A-204ENST00000450303 KDM3BQ7LBC6 1761 aa22.39■■□□□ 1.17
PRPF40A-204ENST00000450303 NRXN2Q9P2S2 1712 aa22.38■■□□□ 1.17
PRPF40A-204ENST00000450303 CAMTA2O94983 1202 aa22.38■■□□□ 1.17
PRPF40A-204ENST00000450303 ARHGAP27Q6ZUM4 889 aa22.38■■□□□ 1.17
PRPF40A-204ENST00000450303 RRP7AQ9Y3A4 280 aaKnown RBP22.38■■□□□ 1.17
PRPF40A-204ENST00000450303 SCN7AQ01118 1682 aa22.38■■□□□ 1.17
PRPF40A-204ENST00000450303 NBPF26B4DH59 902 aa22.37■■□□□ 1.17
PRPF40A-204ENST00000450303 TMPOP42166 694 aaKnown RBP22.37■■□□□ 1.17
PRPF40A-204ENST00000450303 WDR43Q15061 677 aaKnown RBP eCLIP22.37■■□□□ 1.17
PRPF40A-204ENST00000450303 NEUROD2Q15784 382 aa22.37■■□□□ 1.17
PRPF40A-204ENST00000450303 NBPF10Q6P3W6 841 aaKnown RBP22.37■■□□□ 1.17
PRPF40A-204ENST00000450303 CCDC24Q8N4L8 307 aa22.37■■□□□ 1.17
PRPF40A-204ENST00000450303 NBPF15Q8N660 670 aa22.37■■□□□ 1.17
PRPF40A-204ENST00000450303 EIF4A1P60842 406 aaKnown RBP22.36■■□□□ 1.17
PRPF40A-204ENST00000450303 CCDC184Q52MB2 194 aa22.36■■□□□ 1.17
PRPF40A-204ENST00000450303 ATP10DQ9P241 1426 aa22.36■■□□□ 1.17
PRPF40A-204ENST00000450303 DALRD3Q5D0E6 543 aaKnown RBP22.35■■□□□ 1.17
PRPF40A-204ENST00000450303 ZNF526Q8TF50 670 aaPredicted RBP22.35■■□□□ 1.17
PRPF40A-204ENST00000450303 CARMIL3Q8ND23 1372 aa22.35■■□□□ 1.17
PRPF40A-204ENST00000450303 ADAMTS8Q9UP79 889 aa22.34■■□□□ 1.17
PRPF40A-204ENST00000450303 BCORQ6W2J9 1755 aa22.34■■□□□ 1.17
PRPF40A-204ENST00000450303 ARFGEF1Q9Y6D6 1849 aa22.34■■□□□ 1.17
PRPF40A-204ENST00000450303 LAMB4A4D0S4 1761 aa22.33■■□□□ 1.17
PRPF40A-204ENST00000450303 GIGYF1O75420 1035 aaPredicted RBP22.33■■□□□ 1.17
PRPF40A-204ENST00000450303 NGEFQ8N5V2 710 aa22.33■■□□□ 1.17
PRPF40A-204ENST00000450303 SETDB2Q96T68 719 aa22.33■■□□□ 1.17
PRPF40A-204ENST00000450303 C2CD5Q86YS7 1000 aa22.32■■□□□ 1.16
PRPF40A-204ENST00000450303 RUNDC1Q96C34 613 aa22.32■■□□□ 1.16
PRPF40A-204ENST00000450303 TSPYL4Q9UJ04 414 aa22.32■■□□□ 1.16
PRPF40A-204ENST00000450303 ADCY9O60503 1353 aa22.31■■□□□ 1.16
PRPF40A-204ENST00000450303 PRR5LQ6MZQ0 368 aa22.31■■□□□ 1.16
PRPF40A-204ENST00000450303 ANKRD31Q8N7Z5 1873 aa22.3■■□□□ 1.16
PRPF40A-204ENST00000450303 H0YIN7 160 aa22.29■■□□□ 1.16
PRPF40A-204ENST00000450303 NPHP1O15259 732 aa22.29■■□□□ 1.16
PRPF40A-204ENST00000450303 LMOD3Q0VAK6 560 aa22.29■■□□□ 1.16
PRPF40A-204ENST00000450303 FAM9BQ8IZU0 186 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms