RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 MMP10P09238 476 aa16.84■□□□□ 0.29
PRPF40A-203ENST00000448428 CANXP27824 592 aaKnown RBP16.84■□□□□ 0.29
PRPF40A-203ENST00000448428 WDR43Q15061 677 aaKnown RBP eCLIP16.84■□□□□ 0.29
PRPF40A-203ENST00000448428 THUMPD2Q9BTF0 503 aaKnown RBP16.84■□□□□ 0.29
PRPF40A-203ENST00000448428 ADAMTS8Q9UP79 889 aa16.84■□□□□ 0.29
PRPF40A-203ENST00000448428 CD2APQ9Y5K6 639 aa16.84■□□□□ 0.29
PRPF40A-203ENST00000448428 RIPK4P57078 832 aa16.83■□□□□ 0.28
PRPF40A-203ENST00000448428 CCDC146Q8IYE0 955 aa16.83■□□□□ 0.28
PRPF40A-203ENST00000448428 USP42Q9H9J4 1324 aaKnown RBP16.83■□□□□ 0.28
PRPF40A-203ENST00000448428 TMPOP42166 694 aaKnown RBP16.82■□□□□ 0.28
PRPF40A-203ENST00000448428 FKBP8Q14318 412 aa16.82■□□□□ 0.28
PRPF40A-203ENST00000448428 USP16Q9Y5T5 823 aa16.82■□□□□ 0.28
PRPF40A-203ENST00000448428 PRAMEF22A3QJZ6 481 aa16.81■□□□□ 0.28
PRPF40A-203ENST00000448428 ZPR1O75312 459 aa16.81■□□□□ 0.28
PRPF40A-203ENST00000448428 A1BGP04217 495 aa16.81■□□□□ 0.28
PRPF40A-203ENST00000448428 RUNDC1Q96C34 613 aa16.81■□□□□ 0.28
PRPF40A-203ENST00000448428 COL15A1P39059 1388 aa16.8■□□□□ 0.28
PRPF40A-203ENST00000448428 SNRPA1P09661 255 aaKnown RBP16.8■□□□□ 0.28
PRPF40A-203ENST00000448428 EIF5P55010 431 aaKnown RBP16.8■□□□□ 0.28
PRPF40A-203ENST00000448428 GPR162Q16538 588 aa16.8■□□□□ 0.28
PRPF40A-203ENST00000448428 USPL1Q5W0Q7 1092 aa16.8■□□□□ 0.28
PRPF40A-203ENST00000448428 PNISRQ8TF01 805 aaKnown RBP16.8■□□□□ 0.28
PRPF40A-203ENST00000448428 NARFQ9UHQ1 456 aa16.8■□□□□ 0.28
PRPF40A-203ENST00000448428 RRP7AQ9Y3A4 280 aaKnown RBP16.8■□□□□ 0.28
PRPF40A-203ENST00000448428 KDM3BQ7LBC6 1761 aa16.79■□□□□ 0.28
PRPF40A-203ENST00000448428 NEUROD2Q15784 382 aa16.79■□□□□ 0.28
PRPF40A-203ENST00000448428 CCDC184Q52MB2 194 aa16.79■□□□□ 0.28
PRPF40A-203ENST00000448428 PARP3Q9Y6F1 533 aa16.79■□□□□ 0.28
PRPF40A-203ENST00000448428 TM4SF1P30408 202 aa16.78■□□□□ 0.28
PRPF40A-203ENST00000448428 IL6STP40189 918 aaPredicted RBP16.78■□□□□ 0.28
PRPF40A-203ENST00000448428 PELP1Q8IZL8 1130 aaKnown RBP16.78■□□□□ 0.28
PRPF40A-203ENST00000448428 BCL2L12Q9HB09 334 aa16.78■□□□□ 0.28
PRPF40A-203ENST00000448428 KIF13BQ9NQT8 1826 aa16.77■□□□□ 0.28
PRPF40A-203ENST00000448428 A0A087WZG4 1122 aa16.77■□□□□ 0.28
PRPF40A-203ENST00000448428 YBX3P16989 372 aaKnown RBP eCLIP16.76■□□□□ 0.271e-8■■■■■ 47.2
PRPF40A-203ENST00000448428 PIP4K2AP48426 406 aaPredicted RBP16.76■□□□□ 0.27
PRPF40A-203ENST00000448428 EIF4A1P60842 406 aaKnown RBP16.76■□□□□ 0.27
PRPF40A-203ENST00000448428 DDR1Q08345 913 aa16.76■□□□□ 0.27
PRPF40A-203ENST00000448428 LMOD3Q0VAK6 560 aa16.76■□□□□ 0.27
PRPF40A-203ENST00000448428 TRIM35Q9UPQ4 493 aa16.76■□□□□ 0.27
PRPF40A-203ENST00000448428 TBC1D2BQ9UPU7 963 aa16.76■□□□□ 0.27
PRPF40A-203ENST00000448428 ZNF330Q9Y3S2 320 aaPredicted RBP16.76■□□□□ 0.27
PRPF40A-203ENST00000448428 CHD4Q14839 1912 aa16.75■□□□□ 0.27
PRPF40A-203ENST00000448428 N4BP2Q86UW6 1770 aaPredicted RBP16.74■□□□□ 0.27
PRPF40A-203ENST00000448428 POLRMTO00411 1230 aaKnown RBP16.74■□□□□ 0.27
PRPF40A-203ENST00000448428 ANP32CO43423 234 aa16.74■□□□□ 0.27
PRPF40A-203ENST00000448428 GIGYF1O75420 1035 aaPredicted RBP16.74■□□□□ 0.27
PRPF40A-203ENST00000448428 YY1P25490 414 aa16.74■□□□□ 0.27
PRPF40A-203ENST00000448428 NFIXQ14938 502 aa16.74■□□□□ 0.27
PRPF40A-203ENST00000448428 AFDNP55196 1824 aaKnown RBP16.73■□□□□ 0.27
PRPF40A-203ENST00000448428 NBPF26B4DH59 902 aa16.73■□□□□ 0.27
PRPF40A-203ENST00000448428 NBPF10Q6P3W6 841 aaKnown RBP16.73■□□□□ 0.27
PRPF40A-203ENST00000448428 NBPF15Q8N660 670 aa16.73■□□□□ 0.27
PRPF40A-203ENST00000448428 TSPYL4Q9UJ04 414 aa16.73■□□□□ 0.27
PRPF40A-203ENST00000448428 KIAA1551Q9HCM1 1747 aa16.73■□□□□ 0.27
PRPF40A-203ENST00000448428 C10orf71Q711Q0 1435 aa16.72■□□□□ 0.27
PRPF40A-203ENST00000448428 LAMB4A4D0S4 1761 aa16.72■□□□□ 0.27
PRPF40A-203ENST00000448428 APAF1O14727 1248 aa16.72■□□□□ 0.27
PRPF40A-203ENST00000448428 TGFB2P61812 414 aa16.72■□□□□ 0.27
PRPF40A-203ENST00000448428 NPM2Q86SE8 214 aaKnown RBP16.72■□□□□ 0.27
PRPF40A-203ENST00000448428 BABAM1Q9NWV8 329 aa16.72■□□□□ 0.27
PRPF40A-203ENST00000448428 WWC3Q9ULE0 1092 aa16.72■□□□□ 0.27
PRPF40A-203ENST00000448428 A0A0G2JLW4 131 aa16.71■□□□□ 0.27
PRPF40A-203ENST00000448428 BICDL1Q6ZP65 573 aa16.71■□□□□ 0.27
PRPF40A-203ENST00000448428 DZIP3Q86Y13 1208 aaKnown RBP16.71■□□□□ 0.27
PRPF40A-203ENST00000448428 PXDNLA1KZ92 1463 aa16.7■□□□□ 0.26
PRPF40A-203ENST00000448428 CHL1O00533 1208 aa16.7■□□□□ 0.26
PRPF40A-203ENST00000448428 GRIN3BO60391 1043 aa16.7■□□□□ 0.26
PRPF40A-203ENST00000448428 CAMTA2O94983 1202 aa16.7■□□□□ 0.26
PRPF40A-203ENST00000448428 SERPINB2P05120 415 aa16.7■□□□□ 0.26
PRPF40A-203ENST00000448428 DPEP1P16444 411 aa16.7■□□□□ 0.26
PRPF40A-203ENST00000448428 TBC1D9BQ66K14 1250 aa16.7■□□□□ 0.26
PRPF40A-203ENST00000448428 SCN7AQ01118 1682 aa16.69■□□□□ 0.26
PRPF40A-203ENST00000448428 LAS1LQ9Y4W2 734 aaKnown RBP16.69■□□□□ 0.26
PRPF40A-203ENST00000448428 NRXN2Q9P2S2 1712 aa16.69■□□□□ 0.26
PRPF40A-203ENST00000448428 KCNA3P22001 575 aa16.68■□□□□ 0.26
PRPF40A-203ENST00000448428 MRS2Q9HD23 443 aa16.68■□□□□ 0.26
PRPF40A-203ENST00000448428 BCORQ6W2J9 1755 aa16.68■□□□□ 0.26
PRPF40A-203ENST00000448428 BRCA1P38398 1863 aaKnown RBP16.67■□□□□ 0.26
PRPF40A-203ENST00000448428 NGEFQ8N5V2 710 aa16.66■□□□□ 0.26
PRPF40A-203ENST00000448428 MYL6BP14649 208 aa16.65■□□□□ 0.26
PRPF40A-203ENST00000448428 EIF2S2P20042 333 aaKnown RBP16.65■□□□□ 0.26
PRPF40A-203ENST00000448428 CHRNA5P30532 468 aa16.65■□□□□ 0.26
PRPF40A-203ENST00000448428 CLEC4GQ6UXB4 293 aa16.65■□□□□ 0.26
PRPF40A-203ENST00000448428 SETDB2Q96T68 719 aa16.65■□□□□ 0.26
PRPF40A-203ENST00000448428 KRT24Q2M2I5 525 aa16.64■□□□□ 0.25
PRPF40A-203ENST00000448428 CFAP44Q96MT7 982 aa16.64■□□□□ 0.25
PRPF40A-203ENST00000448428 BCS1LQ9Y276 419 aa16.64■□□□□ 0.25
PRPF40A-203ENST00000448428 SENP3-EIF4A1A0A087X0R7 540 aa16.63■□□□□ 0.25
PRPF40A-203ENST00000448428 ZNF853P0CG23 659 aa16.63■□□□□ 0.25
PRPF40A-203ENST00000448428 PDIA6Q15084 440 aa16.63■□□□□ 0.25
PRPF40A-203ENST00000448428 HLFQ16534 295 aa16.63■□□□□ 0.25
PRPF40A-203ENST00000448428 TTLL7Q6ZT98 887 aa16.63■□□□□ 0.25
PRPF40A-203ENST00000448428 PIM2Q9P1W9 311 aa16.63■□□□□ 0.25
PRPF40A-203ENST00000448428 ZNF652Q9Y2D9 606 aa16.63■□□□□ 0.25
PRPF40A-203ENST00000448428 NUP98P52948 1817 aa16.63■□□□□ 0.25
PRPF40A-203ENST00000448428 CARMIL3Q8ND23 1372 aa16.63■□□□□ 0.25
PRPF40A-203ENST00000448428 RGL2O15211 777 aa16.62■□□□□ 0.25
PRPF40A-203ENST00000448428 PRR5LQ6MZQ0 368 aa16.62■□□□□ 0.25
PRPF40A-203ENST00000448428 CCDC24Q8N4L8 307 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms