RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 BICDL1Q6ZP65 573 aa6.8□□□□□ -1.32
VPS41-207ENST00000439468 SLC9A9Q8IVB4 645 aa6.8□□□□□ -1.32
VPS41-207ENST00000439468 SCHIP1Q9P0W5 487 aaPredicted RBP6.8□□□□□ -1.32
VPS41-207ENST00000439468 NSFL1CQ9UNZ2 370 aaKnown RBP6.8□□□□□ -1.32
VPS41-207ENST00000439468 IQSEC3Q9UPP2 1182 aaPredicted RBP6.8□□□□□ -1.32
VPS41-207ENST00000439468 PHF24Q9UPV7 400 aa6.8□□□□□ -1.32
VPS41-207ENST00000439468 CHMP3Q9Y3E7 222 aa6.8□□□□□ -1.32
VPS41-207ENST00000439468 GJA3Q9Y6H8 435 aa6.8□□□□□ -1.32
VPS41-207ENST00000439468 ZBTB7BO15156 539 aaPredicted RBP6.79□□□□□ -1.32
VPS41-207ENST00000439468 MAP3K10Q02779 954 aa6.79□□□□□ -1.32
VPS41-207ENST00000439468 SRSF11Q05519 484 aaKnown RBP6.79□□□□□ -1.32
VPS41-207ENST00000439468 LBRQ14739 615 aaKnown RBP6.79□□□□□ -1.32
VPS41-207ENST00000439468 C1orf216Q8TAB5 229 aa6.79□□□□□ -1.32
VPS41-207ENST00000439468 IGF1RP08069 1367 aa6.79□□□□□ -1.32
VPS41-207ENST00000439468 THBS1P07996 1170 aa6.78□□□□□ -1.32
VPS41-207ENST00000439468 ATP4AP20648 1035 aa6.78□□□□□ -1.32
VPS41-207ENST00000439468 RFX1P22670 979 aa6.78□□□□□ -1.32
VPS41-207ENST00000439468 ZNF385CQ66K41 422 aaPredicted RBP6.78□□□□□ -1.32
VPS41-207ENST00000439468 SIX5Q8N196 739 aa6.78□□□□□ -1.32
VPS41-207ENST00000439468 TSEN2Q8NCE0 465 aaKnown RBP6.78□□□□□ -1.32
VPS41-207ENST00000439468 WHAMMQ8TF30 809 aa6.78□□□□□ -1.32
VPS41-207ENST00000439468 ABHD17AQ96GS6 310 aa6.78□□□□□ -1.32
VPS41-207ENST00000439468 CRISPLD1Q9H336 500 aa6.78□□□□□ -1.32
VPS41-207ENST00000439468 VRTNQ9H8Y1 702 aa6.78□□□□□ -1.32
VPS41-207ENST00000439468 A0A1W2PNR3 127 aa6.77□□□□□ -1.33
VPS41-207ENST00000439468 SLURP2P0DP57 97 aa6.77□□□□□ -1.33
VPS41-207ENST00000439468 FIGNL1Q6PIW4 674 aa6.77□□□□□ -1.33
VPS41-207ENST00000439468 L3MBTL2Q969R5 705 aa6.77□□□□□ -1.33
VPS41-207ENST00000439468 ARXQ96QS3 562 aa6.77□□□□□ -1.33
VPS41-207ENST00000439468 HINFPQ9BQA5 517 aa6.77□□□□□ -1.33
VPS41-207ENST00000439468 TSPAN10Q9H1Z9 355 aaPredicted RBP6.77□□□□□ -1.33
VPS41-207ENST00000439468 NEUROD4Q9HD90 331 aa6.77□□□□□ -1.33
VPS41-207ENST00000439468 ZDHHC3Q9NYG2 299 aa6.77□□□□□ -1.33
VPS41-207ENST00000439468 SERTM1A2A2V5 107 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 USP17L15C9J2P7 530 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 USP17L10C9JJH3 530 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 USP17L13C9JLJ4 530 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 USP17L12C9JPN9 530 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 USP17L11C9JVI0 530 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 USP17L21D6R901 530 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 USP17L18D6R9N7 530 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 USP17L22D6RA61 530 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 USP17L17D6RBQ6 530 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 USP17L19D6RCP7 530 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 USP17L20D6RJB6 530 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 NOS2P35228 1153 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 TXLNAP40222 546 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 EPHA4P54764 986 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 SEC13P55735 322 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 FOXK2Q01167 660 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 USP17L24Q0WX57 530 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 CRTC2Q53ET0 693 aaPredicted RBP6.76□□□□□ -1.33
VPS41-207ENST00000439468 CDCA8Q53HL2 280 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 LYPD4Q6UWN0 246 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 ZDHHC1Q8WTX9 485 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 CFHR5Q9BXR6 569 aa6.76□□□□□ -1.33
VPS41-207ENST00000439468 DCDC2BA2VCK2 349 aa6.75□□□□□ -1.33
VPS41-207ENST00000439468 ATXN7O15265 892 aaPredicted RBP6.75□□□□□ -1.33
VPS41-207ENST00000439468 PPP1R12BO60237 982 aaPredicted RBP6.75□□□□□ -1.33
VPS41-207ENST00000439468 LGR5O75473 907 aa6.75□□□□□ -1.33
VPS41-207ENST00000439468 BMP4P12644 408 aa6.75□□□□□ -1.33
VPS41-207ENST00000439468 FGFR3P22607 806 aa6.75□□□□□ -1.33
VPS41-207ENST00000439468 PSMA6P60900 246 aaKnown RBP6.75□□□□□ -1.33
VPS41-207ENST00000439468 DPYDQ12882 1025 aa6.75□□□□□ -1.33
VPS41-207ENST00000439468 TEAD4Q15561 434 aa6.75□□□□□ -1.33
VPS41-207ENST00000439468 CHMP7Q8WUX9 453 aaPredicted RBP6.75□□□□□ -1.33
VPS41-207ENST00000439468 ZCCHC2Q9C0B9 1178 aaKnown RBP6.75□□□□□ -1.33
VPS41-207ENST00000439468 ATXN7L1Q9ULK2 861 aaPredicted RBP6.75□□□□□ -1.33
VPS41-207ENST00000439468 M0R2N6 131 aa6.74□□□□□ -1.33
VPS41-207ENST00000439468 KHNYNO15037 678 aaKnown RBP6.74□□□□□ -1.33
VPS41-207ENST00000439468 BNIP3LO60238 219 aa6.74□□□□□ -1.33
VPS41-207ENST00000439468 CELA2BP08218 269 aaPredicted RBP6.74□□□□□ -1.33
VPS41-207ENST00000439468 MAP2K3P46734 347 aa6.74□□□□□ -1.33
VPS41-207ENST00000439468 MARSP56192 900 aaKnown RBP6.74□□□□□ -1.33
VPS41-207ENST00000439468 PTK7Q13308 1070 aa6.74□□□□□ -1.33
VPS41-207ENST00000439468 CFAP70Q5T0N1 1121 aa6.74□□□□□ -1.33
VPS41-207ENST00000439468 KANK4Q5T7N3 995 aaPredicted RBP6.74□□□□□ -1.33
VPS41-207ENST00000439468 SH3PXD2AQ5TCZ1 1133 aa6.74□□□□□ -1.33
VPS41-207ENST00000439468 NLRP8Q86W28 1048 aa6.74□□□□□ -1.33
VPS41-207ENST00000439468 HOMEZQ8IX15 550 aa6.74□□□□□ -1.33
VPS41-207ENST00000439468 ZNF295-AS1Q8N0V1 137 aa6.74□□□□□ -1.33
VPS41-207ENST00000439468 RHPN1Q8TCX5 695 aa6.74□□□□□ -1.33
VPS41-207ENST00000439468 ZIC5Q96T25 663 aa6.74□□□□□ -1.33
VPS41-207ENST00000439468 ENAMQ9NRM1 1142 aa6.74□□□□□ -1.33
VPS41-207ENST00000439468 PCDHGC4Q9Y5F7 938 aa6.74□□□□□ -1.33
VPS41-207ENST00000439468 LOC100996750A0A140TA64 210 aa6.73□□□□□ -1.33
VPS41-207ENST00000439468 FAM196BA6NMK8 535 aa6.73□□□□□ -1.33
VPS41-207ENST00000439468 UBAP2LQ14157 1087 aaKnown RBP6.73□□□□□ -1.33
VPS41-207ENST00000439468 ANKMY2Q8IV38 441 aa6.73□□□□□ -1.33
VPS41-207ENST00000439468 NEDD1Q8NHV4 660 aa6.73□□□□□ -1.33
VPS41-207ENST00000439468 SCG3Q8WXD2 468 aaKnown RBP6.73□□□□□ -1.33
VPS41-207ENST00000439468 NGLY1Q96IV0 654 aa6.73□□□□□ -1.33
VPS41-207ENST00000439468 KRTAP4-6Q9BYQ5 205 aa6.73□□□□□ -1.33
VPS41-207ENST00000439468 ADAMTS8Q9UP79 889 aa6.73□□□□□ -1.33
VPS41-207ENST00000439468 HCN4Q9Y3Q4 1203 aa6.73□□□□□ -1.33
VPS41-207ENST00000439468 BCRP11274 1271 aa6.72□□□□□ -1.33
VPS41-207ENST00000439468 LRRC69Q6ZNQ3 347 aa6.72□□□□□ -1.33
VPS41-207ENST00000439468 ACDQ96AP0 544 aa6.72□□□□□ -1.33
VPS41-207ENST00000439468 CCDC97Q96F63 343 aaPredicted RBP6.72□□□□□ -1.33
VPS41-207ENST00000439468 OXCT2Q9BYC2 517 aaPredicted RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms