RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 JCADQ9P266 1359 aa15.66■□□□□ 0.1
PTCH1-207ENST00000429896 ERVV-2B6SEH9 535 aa15.66■□□□□ 0.1
PTCH1-207ENST00000429896 PARP3Q9Y6F1 533 aa15.66■□□□□ 0.1
PTCH1-207ENST00000429896 ZKSCAN1P17029 563 aaPredicted RBP15.65■□□□□ 0.1
PTCH1-207ENST00000429896 DDX46Q7L014 1031 aaKnown RBP15.65■□□□□ 0.1
PTCH1-207ENST00000429896 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.65■□□□□ 0.1
PTCH1-207ENST00000429896 BABAM1Q9NWV8 329 aa15.65■□□□□ 0.1
PTCH1-207ENST00000429896 ZNF790Q6PG37 636 aa15.65■□□□□ 0.1
PTCH1-207ENST00000429896 SYNE3Q6ZMZ3 975 aa15.65■□□□□ 0.1
PTCH1-207ENST00000429896 ZNF622Q969S3 477 aaKnown RBP eCLIP15.65■□□□□ 0.1
PTCH1-207ENST00000429896 KIAA2012Q0VF49 1180 aa15.65■□□□□ 0.1
PTCH1-207ENST00000429896 TRDNQ13061 729 aa15.65■□□□□ 0.1
PTCH1-207ENST00000429896 AACSQ86V21 672 aa15.65■□□□□ 0.1
PTCH1-207ENST00000429896 CTDP1Q9Y5B0 961 aaPredicted RBP15.65■□□□□ 0.1
PTCH1-207ENST00000429896 DLC1Q96QB1 1528 aa15.65■□□□□ 0.1
PTCH1-207ENST00000429896 RNF20Q5VTR2 975 aa15.65■□□□□ 0.1
PTCH1-207ENST00000429896 INTS3Q68E01 1043 aaKnown RBP15.65■□□□□ 0.1
PTCH1-207ENST00000429896 FAM161AQ3B820 660 aa15.64■□□□□ 0.09
PTCH1-207ENST00000429896 LGR6Q9HBX8 967 aa15.64■□□□□ 0.09
PTCH1-207ENST00000429896 AKAP2Q9Y2D5 859 aa15.64■□□□□ 0.09
PTCH1-207ENST00000429896 KIF24Q5T7B8 1368 aa15.64■□□□□ 0.09
PTCH1-207ENST00000429896 DEKP35659 375 aaKnown RBP15.64■□□□□ 0.09
PTCH1-207ENST00000429896 ZNF219Q9P2Y4 722 aaPredicted RBP15.64■□□□□ 0.09
PTCH1-207ENST00000429896 NIP7Q9Y221 180 aaKnown RBP eCLIP15.64■□□□□ 0.09
PTCH1-207ENST00000429896 PHKG2P15735 406 aa15.64■□□□□ 0.09
PTCH1-207ENST00000429896 PIP4K2AP48426 406 aaPredicted RBP15.64■□□□□ 0.09
PTCH1-207ENST00000429896 C8orf58Q8NAV2 365 aa15.64■□□□□ 0.09
PTCH1-207ENST00000429896 NYXQ9GZU5 481 aa15.64■□□□□ 0.09
PTCH1-207ENST00000429896 THRAP3Q9Y2W1 955 aaKnown RBP15.64■□□□□ 0.09
PTCH1-207ENST00000429896 AFF2P51816 1311 aa15.64■□□□□ 0.09
PTCH1-207ENST00000429896 DIP2AQ14689 1571 aa15.64■□□□□ 0.09
PTCH1-207ENST00000429896 HSPA1LP34931 641 aa15.63■□□□□ 0.09
PTCH1-207ENST00000429896 CDC5LQ99459 802 aaKnown RBP15.63■□□□□ 0.09
PTCH1-207ENST00000429896 ST18O60284 1047 aa15.63■□□□□ 0.09
PTCH1-207ENST00000429896 RBM5P52756 815 aaKnown RBP eCLIP15.63■□□□□ 0.09
PTCH1-207ENST00000429896 ANO2Q9NQ90 1003 aa15.63■□□□□ 0.09
PTCH1-207ENST00000429896 VWDEQ8N2E2 1590 aa15.63■□□□□ 0.09
PTCH1-207ENST00000429896 RASSF8Q8NHQ8 419 aa15.63■□□□□ 0.09
PTCH1-207ENST00000429896 SOS1Q07889 1333 aaPredicted RBP15.62■□□□□ 0.09
PTCH1-207ENST00000429896 HIP1O00291 1037 aa15.62■□□□□ 0.09
PTCH1-207ENST00000429896 CAVIN4Q5BKX8 364 aa15.62■□□□□ 0.09
PTCH1-207ENST00000429896 UTP14AQ9BVJ6 771 aaKnown RBP15.62■□□□□ 0.09
PTCH1-207ENST00000429896 KRT27Q7Z3Y8 459 aa15.62■□□□□ 0.09
PTCH1-207ENST00000429896 FAM196AQ6ZSG2 479 aa15.62■□□□□ 0.09
PTCH1-207ENST00000429896 CHMP4CQ96CF2 233 aa15.62■□□□□ 0.09
PTCH1-207ENST00000429896 IPO9Q96P70 1041 aaKnown RBP15.62■□□□□ 0.09
PTCH1-207ENST00000429896 DEPDC5O75140 1603 aa15.62■□□□□ 0.09
PTCH1-207ENST00000429896 IFIT1P09914 478 aaKnown RBP15.62■□□□□ 0.09
PTCH1-207ENST00000429896 KSR2Q6VAB6 950 aa15.62■□□□□ 0.09
PTCH1-207ENST00000429896 CCDC152Q4G0S7 254 aa15.61■□□□□ 0.09
PTCH1-207ENST00000429896 ERBB3P21860 1342 aa15.61■□□□□ 0.09
PTCH1-207ENST00000429896 FOXD4L6Q3SYB3 417 aaPredicted RBP15.61■□□□□ 0.09
PTCH1-207ENST00000429896 FOXD4L3Q6VB84 417 aaPredicted RBP15.61■□□□□ 0.09
PTCH1-207ENST00000429896 UBE3BQ7Z3V4 1068 aa15.61■□□□□ 0.09
PTCH1-207ENST00000429896 LRRFIP2Q9Y608 721 aaKnown RBP15.61■□□□□ 0.09
PTCH1-207ENST00000429896 ZSCAN25Q6NSZ9 544 aa15.61■□□□□ 0.09
PTCH1-207ENST00000429896 ERICH2A1L162 156 aa15.6■□□□□ 0.09
PTCH1-207ENST00000429896 SPATA31A6Q5VVP1 1343 aa15.6■□□□□ 0.09
PTCH1-207ENST00000429896 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.6■□□□□ 0.09
PTCH1-207ENST00000429896 TPTE2Q6XPS3 522 aa15.6■□□□□ 0.09
PTCH1-207ENST00000429896 CCDC87Q9NVE4 849 aa15.6■□□□□ 0.09
PTCH1-207ENST00000429896 CDC45O75419 566 aa15.6■□□□□ 0.09
PTCH1-207ENST00000429896 PDZRN3Q9UPQ7 1066 aa15.6■□□□□ 0.09
PTCH1-207ENST00000429896 RAB11FIP3O75154 756 aa15.6■□□□□ 0.09
PTCH1-207ENST00000429896 NCOA3Q9Y6Q9 1424 aa15.6■□□□□ 0.09
PTCH1-207ENST00000429896 TRIM27P14373 513 aa15.59■□□□□ 0.09
PTCH1-207ENST00000429896 SEPT12Q8IYM1 358 aa15.59■□□□□ 0.09
PTCH1-207ENST00000429896 AKAP17AQ02040 695 aaKnown RBP15.59■□□□□ 0.09
PTCH1-207ENST00000429896 FKBP4Q02790 459 aaKnown RBP eCLIP15.59■□□□□ 0.09
PTCH1-207ENST00000429896 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.59■□□□□ 0.09
PTCH1-207ENST00000429896 PTPRUQ92729 1446 aa15.59■□□□□ 0.09
PTCH1-207ENST00000429896 SLC5A1P13866 664 aa15.59■□□□□ 0.09
PTCH1-207ENST00000429896 NLRP3Q96P20 1036 aa15.59■□□□□ 0.09
PTCH1-207ENST00000429896 SPINK5Q9NQ38 1064 aaPredicted RBP15.59■□□□□ 0.09
PTCH1-207ENST00000429896 RAI14Q9P0K7 980 aa15.59■□□□□ 0.09
PTCH1-207ENST00000429896 KIF3AQ9Y496 699 aa15.59■□□□□ 0.09
PTCH1-207ENST00000429896 ARHGAP45Q92619 1136 aa15.58■□□□□ 0.09
PTCH1-207ENST00000429896 QRICH2Q9H0J4 1663 aa15.58■□□□□ 0.09
PTCH1-207ENST00000429896 SLC3A2P08195 630 aaKnown RBP15.58■□□□□ 0.08
PTCH1-207ENST00000429896 A0A0U1RQG5 324 aaPredicted RBP15.58■□□□□ 0.08
PTCH1-207ENST00000429896 ALDH1L1O75891 902 aa15.58■□□□□ 0.08
PTCH1-207ENST00000429896 MRPL50Q8N5N7 158 aaKnown RBP15.58■□□□□ 0.08
PTCH1-207ENST00000429896 IL1RAPL2Q9NP60 686 aa15.58■□□□□ 0.08
PTCH1-207ENST00000429896 C6orf229H3BNL8 230 aa15.57■□□□□ 0.08
PTCH1-207ENST00000429896 KIF1BPQ96EK5 621 aa15.57■□□□□ 0.08
PTCH1-207ENST00000429896 IGSF1Q8N6C5 1336 aa15.57■□□□□ 0.08
PTCH1-207ENST00000429896 BLMP54132 1417 aaPredicted RBP15.57■□□□□ 0.08
PTCH1-207ENST00000429896 NFXL1Q6ZNB6 911 aa15.57■□□□□ 0.08
PTCH1-207ENST00000429896 RALYLQ86SE5 291 aaKnown RBP15.57■□□□□ 0.08
PTCH1-207ENST00000429896 JARID2Q92833 1246 aaPredicted RBP15.56■□□□□ 0.08
PTCH1-207ENST00000429896 DHX16O60231 1041 aaKnown RBP15.56■□□□□ 0.08
PTCH1-207ENST00000429896 HOXB7P09629 217 aa15.56■□□□□ 0.08
PTCH1-207ENST00000429896 LRP2BPQ9P2M1 347 aa15.56■□□□□ 0.08
PTCH1-207ENST00000429896 EXOC6BQ9Y2D4 811 aa15.56■□□□□ 0.08
PTCH1-207ENST00000429896 KRT24Q2M2I5 525 aa15.56■□□□□ 0.08
PTCH1-207ENST00000429896 DDX21Q9NR30 783 aaKnown RBP eCLIP15.56■□□□□ 0.08
PTCH1-207ENST00000429896 TMEM131LA2VDJ0 1609 aa15.55■□□□□ 0.08
PTCH1-207ENST00000429896 BCORL1Q5H9F3 1711 aa15.55■□□□□ 0.08
PTCH1-207ENST00000429896 LDHAL6AQ6ZMR3 332 aa15.55■□□□□ 0.08
PTCH1-207ENST00000429896 CWC22Q9HCG8 908 aaKnown RBP15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 123.5 ms