RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 DTNBO60941 627 aa25.59■■□□□ 1.69
USP48-205ENST00000421625 UBE2HP62256 183 aa25.59■■□□□ 1.69
USP48-205ENST00000421625 LRRFIP2Q9Y608 721 aaKnown RBP25.59■■□□□ 1.69
USP48-205ENST00000421625 AP5Z1O43299 807 aa25.59■■□□□ 1.69
USP48-205ENST00000421625 GIMAP6Q6P9H5 292 aa25.59■■□□□ 1.69
USP48-205ENST00000421625 NUTM1Q86Y26 1132 aa25.59■■□□□ 1.69
USP48-205ENST00000421625 NECTIN2Q92692 538 aa25.59■■□□□ 1.69
USP48-205ENST00000421625 ZSCAN20P17040 1043 aaPredicted RBP25.58■■□□□ 1.68
USP48-205ENST00000421625 SYT1P21579 422 aa25.58■■□□□ 1.68
USP48-205ENST00000421625 LTKP29376 864 aa25.58■■□□□ 1.68
USP48-205ENST00000421625 KIF3AQ9Y496 699 aa25.58■■□□□ 1.68
USP48-205ENST00000421625 STX6O43752 255 aa25.57■■□□□ 1.68
USP48-205ENST00000421625 GNAI3P08754 354 aa25.57■■□□□ 1.68
USP48-205ENST00000421625 CBX1P83916 185 aa25.57■■□□□ 1.68
USP48-205ENST00000421625 SOX12O15370 315 aa25.57■■□□□ 1.68
USP48-205ENST00000421625 LETM1O95202 739 aaPredicted RBP25.57■■□□□ 1.68
USP48-205ENST00000421625 SNX14Q9Y5W7 946 aa25.57■■□□□ 1.68
USP48-205ENST00000421625 AK2P54819 239 aa25.56■■□□□ 1.68
USP48-205ENST00000421625 DMTNQ08495 405 aa25.56■■□□□ 1.68
USP48-205ENST00000421625 FLIIQ13045 1269 aa25.56■■□□□ 1.68
USP48-205ENST00000421625 MTHFSDQ2M296 383 aaKnown RBP25.56■■□□□ 1.68
USP48-205ENST00000421625 FUCA2Q9BTY2 467 aa25.56■■□□□ 1.68
USP48-205ENST00000421625 PRR36Q9H6K5 1346 aa25.56■■□□□ 1.68
USP48-205ENST00000421625 TTC14Q96N46 770 aa25.56■■□□□ 1.68
USP48-205ENST00000421625 STK31Q9BXU1 1019 aa25.56■■□□□ 1.68
USP48-205ENST00000421625 BCL2L12Q9HB09 334 aa25.56■■□□□ 1.68
USP48-205ENST00000421625 AKAP12Q02952 1782 aa25.56■■□□□ 1.68
USP48-205ENST00000421625 RUFY3Q7L099 469 aa25.55■■□□□ 1.68
USP48-205ENST00000421625 KCNF1Q9H3M0 494 aa25.55■■□□□ 1.68
USP48-205ENST00000421625 PYCARDQ9ULZ3 195 aa25.55■■□□□ 1.68
USP48-205ENST00000421625 F13A1P00488 732 aa25.55■■□□□ 1.68
USP48-205ENST00000421625 PPP4R3BQ5MIZ7 849 aa25.55■■□□□ 1.68
USP48-205ENST00000421625 RASEFQ8IZ41 740 aa25.55■■□□□ 1.68
USP48-205ENST00000421625 SLC26A8Q96RN1 970 aa25.55■■□□□ 1.68
USP48-205ENST00000421625 TMEM2Q9UHN6 1383 aa25.55■■□□□ 1.68
USP48-205ENST00000421625 RIMS1Q86UR5 1692 aaKnown RBP25.55■■□□□ 1.68
USP48-205ENST00000421625 ATP2B3Q16720 1220 aa25.55■■□□□ 1.68
USP48-205ENST00000421625 ITSN1Q15811 1721 aa25.54■■□□□ 1.68
USP48-205ENST00000421625 RAD50Q92878 1312 aa25.54■■□□□ 1.68
USP48-205ENST00000421625 RTF1Q92541 710 aaKnown RBP25.54■■□□□ 1.68
USP48-205ENST00000421625 PEAK1Q9H792 1746 aa25.54■■□□□ 1.68
USP48-205ENST00000421625 CPA1P15085 419 aa25.54■■□□□ 1.68
USP48-205ENST00000421625 MAP3K19Q56UN5 1328 aa25.53■■□□□ 1.68
USP48-205ENST00000421625 HDGFP51858 240 aaKnown RBP25.53■■□□□ 1.68
USP48-205ENST00000421625 LARGE1O95461 756 aa25.52■■□□□ 1.68
USP48-205ENST00000421625 SPC24Q8NBT2 197 aa25.52■■□□□ 1.68
USP48-205ENST00000421625 KIAA1524Q8TCG1 905 aa25.52■■□□□ 1.68
USP48-205ENST00000421625 SMC3Q9UQE7 1217 aa25.52■■□□□ 1.68
USP48-205ENST00000421625 NRXN3Q9Y4C0 1643 aa25.52■■□□□ 1.68
USP48-205ENST00000421625 SGSM2O43147 1006 aa25.51■■□□□ 1.67
USP48-205ENST00000421625 LIMCH1Q9UPQ0 1083 aa25.51■■□□□ 1.67
USP48-205ENST00000421625 RGPD1P0DJD0 1748 aa25.51■■□□□ 1.67
USP48-205ENST00000421625 AOX1Q06278 1338 aa25.51■■□□□ 1.67
USP48-205ENST00000421625 TTC21BQ7Z4L5 1316 aa25.51■■□□□ 1.67
USP48-205ENST00000421625 NUTM2FA1L443 756 aa25.51■■□□□ 1.67
USP48-205ENST00000421625 DNM1Q05193 864 aaKnown RBP25.51■■□□□ 1.67
USP48-205ENST00000421625 UTP14CQ5TAP6 766 aaKnown RBP25.51■■□□□ 1.67
USP48-205ENST00000421625 LSG1Q9H089 658 aaKnown RBP25.5■■□□□ 1.67
USP48-205ENST00000421625 ARHGEF10O15013 1369 aa25.5■■□□□ 1.67
USP48-205ENST00000421625 XRN1Q8IZH2 1706 aaKnown RBP25.5■■□□□ 1.67
USP48-205ENST00000421625 EPB41L2O43491 1005 aaKnown RBP25.5■■□□□ 1.67
USP48-205ENST00000421625 PI4K2BQ8TCG2 481 aa25.5■■□□□ 1.67
USP48-205ENST00000421625 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.5■■□□□ 1.67
USP48-205ENST00000421625 USP44Q9H0E7 712 aa25.49■■□□□ 1.67
USP48-205ENST00000421625 SOS1Q07889 1333 aaPredicted RBP25.49■■□□□ 1.67
USP48-205ENST00000421625 RIOK3O14730 519 aaKnown RBP25.49■■□□□ 1.67
USP48-205ENST00000421625 SPG7Q9UQ90 795 aa25.48■■□□□ 1.67
USP48-205ENST00000421625 OVOS2A0A0J9YW53 1432 aa25.47■■□□□ 1.67
USP48-205ENST00000421625 OVOS2Q6IE36 1432 aa25.47■■□□□ 1.67
USP48-205ENST00000421625 CCDC83Q8IWF9 413 aa25.47■■□□□ 1.67
USP48-205ENST00000421625 UBTFL1P0CB47 393 aaPredicted RBP25.46■■□□□ 1.67
USP48-205ENST00000421625 GJB2P29033 226 aa25.46■■□□□ 1.67
USP48-205ENST00000421625 CCDC30Q5VVM6 783 aa25.46■■□□□ 1.67
USP48-205ENST00000421625 ATP6V1DQ9Y5K8 247 aa25.46■■□□□ 1.67
USP48-205ENST00000421625 SPDYE4A6NLX3 237 aa25.46■■□□□ 1.67
USP48-205ENST00000421625 SURF6O75683 361 aaKnown RBP25.46■■□□□ 1.67
USP48-205ENST00000421625 CASTP20810 708 aaKnown RBP25.46■■□□□ 1.67
USP48-205ENST00000421625 CWC27Q6UX04 472 aaKnown RBP25.46■■□□□ 1.67
USP48-205ENST00000421625 MTMR6Q9Y217 621 aa25.46■■□□□ 1.67
USP48-205ENST00000421625 FAM208AQ9UK61 1670 aaKnown RBP25.45■■□□□ 1.67
USP48-205ENST00000421625 PDCL2Q8N4E4 241 aa25.45■■□□□ 1.66
USP48-205ENST00000421625 SSH3Q8TE77 659 aa25.45■■□□□ 1.66
USP48-205ENST00000421625 UBR1Q8IWV7 1749 aa25.45■■□□□ 1.66
USP48-205ENST00000421625 PPP1R42Q7Z4L9 355 aa25.44■■□□□ 1.66
USP48-205ENST00000421625 RHPN1Q8TCX5 695 aa25.44■■□□□ 1.66
USP48-205ENST00000421625 HYPKQ9NX55 129 aa25.44■■□□□ 1.66
USP48-205ENST00000421625 ACEP12821 1306 aa25.44■■□□□ 1.66
USP48-205ENST00000421625 DIAPH3Q9NSV4 1193 aa25.43■■□□□ 1.66
USP48-205ENST00000421625 ROBO2Q9HCK4 1378 aa25.43■■□□□ 1.66
USP48-205ENST00000421625 CHAF1AQ13111 956 aaPredicted RBP25.42■■□□□ 1.66
USP48-205ENST00000421625 VPS37CA5D8V6 355 aaPredicted RBP25.41■■□□□ 1.66
USP48-205ENST00000421625 CHMP3Q9Y3E7 222 aa25.41■■□□□ 1.66
USP48-205ENST00000421625 ADCK5Q3MIX3 580 aa25.41■■□□□ 1.66
USP48-205ENST00000421625 CNTROBQ8N137 903 aa25.41■■□□□ 1.66
USP48-205ENST00000421625 EID1Q9Y6B2 187 aa25.41■■□□□ 1.66
USP48-205ENST00000421625 ADAMTS13Q76LX8 1427 aa25.41■■□□□ 1.66
USP48-205ENST00000421625 CCDC192P0DO97 292 aa25.41■■□□□ 1.66
USP48-205ENST00000421625 PTGS1P23219 599 aa25.41■■□□□ 1.66
USP48-205ENST00000421625 U2AF2P26368 475 aaKnown RBP eCLIP25.41■■□□□ 1.663e-6■■□□□ 13.2
USP48-205ENST00000421625 ST3GAL1Q11201 340 aa25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms