RNA–Protein interactions for RNA: ENST00000417285.6

VEGFA-208, Transcript of vascular endothelial growth factor A, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,081 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-208	ENST00000417285	C1QTNF8	P60827	252 aa		33.78	■■■■□ 3
VEGFA-208	ENST00000417285	DDR1	Q08345	913 aa		33.78	■■■■□ 3
VEGFA-208	ENST00000417285		A0A087WZG4	1122 aa		33.77	■■■■□ 3
VEGFA-208	ENST00000417285	RTF1	Q92541	710 aa	Known RBP	33.77	■■■■□ 3
VEGFA-208	ENST00000417285	FMNL2	Q96PY5	1086 aa		33.77	■■■■□ 3
VEGFA-208	ENST00000417285	BCS1L	Q9Y276	419 aa		33.77	■■■■□ 3
VEGFA-208	ENST00000417285	COL15A1	P39059	1388 aa		33.76	■■■■□ 3
VEGFA-208	ENST00000417285	HEG1	Q9ULI3	1381 aa		33.76	■■■■□ 3
VEGFA-208	ENST00000417285	CANX	P27824	592 aa	Known RBP	33.76	■■■□□ 2.99
VEGFA-208	ENST00000417285	KIF13B	Q9NQT8	1826 aa		33.76	■■■□□ 2.99
VEGFA-208	ENST00000417285	BTBD11	A6QL63	1104 aa		33.75	■■■□□ 2.99
VEGFA-208	ENST00000417285	POLRMT	O00411	1230 aa	Known RBP	33.75	■■■□□ 2.99
VEGFA-208	ENST00000417285	HTATSF1	O43719	755 aa	Known RBP	33.75	■■■□□ 2.99
VEGFA-208	ENST00000417285	EIF5	P55010	431 aa	Known RBP	33.74	■■■□□ 2.99
VEGFA-208	ENST00000417285	VIRMA	Q69YN4	1812 aa	Known RBP	33.74	■■■□□ 2.99
VEGFA-208	ENST00000417285	KCNA3	P22001	575 aa		33.73	■■■□□ 2.99
VEGFA-208	ENST00000417285	PIM2	Q9P1W9	311 aa		33.73	■■■□□ 2.99
VEGFA-208	ENST00000417285	ATP10D	Q9P241	1426 aa		33.71	■■■□□ 2.99
VEGFA-208	ENST00000417285	NEFM	P07197	916 aa		33.7	■■■□□ 2.99
VEGFA-208	ENST00000417285	NFIX	Q14938	502 aa		33.7	■■■□□ 2.99
VEGFA-208	ENST00000417285	GPBP1L1	Q9HC44	474 aa	Predicted RBP	33.69	■■■□□ 2.98
VEGFA-208	ENST00000417285	UBR2	Q8IWV8	1755 aa		33.69	■■■□□ 2.98
VEGFA-208	ENST00000417285	IL6ST	P40189	918 aa	Predicted RBP	33.68	■■■□□ 2.98
VEGFA-208	ENST00000417285	ARHGAP27	Q6ZUM4	889 aa		33.68	■■■□□ 2.98
VEGFA-208	ENST00000417285	NPM2	Q86SE8	214 aa	Known RBP	33.68	■■■□□ 2.98
VEGFA-208	ENST00000417285	BCL2L12	Q9HB09	334 aa		33.68	■■■□□ 2.98
VEGFA-208	ENST00000417285	ADCY9	O60503	1353 aa		33.68	■■■□□ 2.98
VEGFA-208	ENST00000417285	DALRD3	Q5D0E6	543 aa	Known RBP	33.67	■■■□□ 2.98
VEGFA-208	ENST00000417285	MCM10	Q7L590	875 aa		33.67	■■■□□ 2.98
VEGFA-208	ENST00000417285	KCNQ3	O43525	872 aa		33.65	■■■□□ 2.98
VEGFA-208	ENST00000417285	SERPINB2	P05120	415 aa		33.65	■■■□□ 2.98
VEGFA-208	ENST00000417285	PNN	Q9H307	717 aa	Known RBP	33.64	■■■□□ 2.98
VEGFA-208	ENST00000417285	N4BP2	Q86UW6	1770 aa	Predicted RBP	33.64	■■■□□ 2.98
VEGFA-208	ENST00000417285	KIAA1551	Q9HCM1	1747 aa		33.64	■■■□□ 2.98
VEGFA-208	ENST00000417285	A1BG	P04217	495 aa		33.62	■■■□□ 2.97
VEGFA-208	ENST00000417285	SNRPA1	P09661	255 aa	Known RBP	33.61	■■■□□ 2.97
VEGFA-208	ENST00000417285	CHRNA5	P30532	468 aa		33.61	■■■□□ 2.97
VEGFA-208	ENST00000417285	TAF7	Q15545	349 aa	Predicted RBP	33.61	■■■□□ 2.97
VEGFA-208	ENST00000417285	SIPA1L3	O60292	1781 aa	Predicted RBP	33.61	■■■□□ 2.97
VEGFA-208	ENST00000417285	TBC1D2B	Q9UPU7	963 aa		33.6	■■■□□ 2.97
VEGFA-208	ENST00000417285	ZNF330	Q9Y3S2	320 aa	Predicted RBP	33.6	■■■□□ 2.97
VEGFA-208	ENST00000417285	DCTN1	Q14203	1278 aa		33.59	■■■□□ 2.97
VEGFA-208	ENST00000417285	RALBP1	Q15311	655 aa		33.59	■■■□□ 2.97
VEGFA-208	ENST00000417285	ZNF526	Q8TF50	670 aa	Predicted RBP	33.58	■■■□□ 2.97
VEGFA-208	ENST00000417285	USP16	Q9Y5T5	823 aa		33.58	■■■□□ 2.97
VEGFA-208	ENST00000417285	SENP3-EIF4A1	A0A087X0R7	540 aa		33.57	■■■□□ 2.96
VEGFA-208	ENST00000417285	BICDL1	Q6ZP65	573 aa		33.57	■■■□□ 2.96
VEGFA-208	ENST00000417285	PLEKHF1	Q96S99	279 aa		33.56	■■■□□ 2.96
VEGFA-208	ENST00000417285	DDX10	Q13206	875 aa	Known RBP	33.54	■■■□□ 2.96
VEGFA-208	ENST00000417285	TBC1D9B	Q66K14	1250 aa		33.54	■■■□□ 2.96
VEGFA-208	ENST00000417285	PNISR	Q8TF01	805 aa	Known RBP	33.54	■■■□□ 2.96
VEGFA-208	ENST00000417285	PDZRN3	Q9UPQ7	1066 aa		33.53	■■■□□ 2.96
VEGFA-208	ENST00000417285		H0YIN7	160 aa		33.52	■■■□□ 2.96
VEGFA-208	ENST00000417285	NFE2L2	Q16236	605 aa		33.52	■■■□□ 2.96
VEGFA-208	ENST00000417285	SETDB2	Q96T68	719 aa		33.52	■■■□□ 2.96
VEGFA-208	ENST00000417285	CAMTA2	O94983	1202 aa		33.51	■■■□□ 2.95
VEGFA-208	ENST00000417285	DZIP3	Q86Y13	1208 aa	Known RBP	33.51	■■■□□ 2.95
VEGFA-208	ENST00000417285	C2CD5	Q86YS7	1000 aa		33.5	■■■□□ 2.95
VEGFA-208	ENST00000417285	BRIP1	Q9BX63	1249 aa		33.5	■■■□□ 2.95
VEGFA-208	ENST00000417285	BRCA1	P38398	1863 aa	Known RBP	33.5	■■■□□ 2.95
VEGFA-208	ENST00000417285	PRAMEF22	A3QJZ6	481 aa		33.49	■■■□□ 2.95
VEGFA-208	ENST00000417285	C9orf131	Q5VYM1	1079 aa		33.49	■■■□□ 2.95
VEGFA-208	ENST00000417285	CLEC4G	Q6UXB4	293 aa		33.49	■■■□□ 2.95
VEGFA-208	ENST00000417285	TTLL6	Q8N841	843 aa		33.49	■■■□□ 2.95
VEGFA-208	ENST00000417285	MAPK8IP3	Q9UPT6	1336 aa		33.49	■■■□□ 2.95
VEGFA-208	ENST00000417285	CARMIL3	Q8ND23	1372 aa		33.48	■■■□□ 2.95
VEGFA-208	ENST00000417285	PDE6B	P35913	854 aa		33.48	■■■□□ 2.95
VEGFA-208	ENST00000417285	MIS18A	Q9NYP9	233 aa		33.47	■■■□□ 2.95
VEGFA-208	ENST00000417285	NRXN2	Q9P2S2	1712 aa		33.47	■■■□□ 2.95
VEGFA-208	ENST00000417285	ARFGEF1	Q9Y6D6	1849 aa		33.45	■■■□□ 2.95
VEGFA-208	ENST00000417285	RGL2	O15211	777 aa		33.45	■■■□□ 2.95
VEGFA-208	ENST00000417285	ZNF652	Q9Y2D9	606 aa		33.45	■■■□□ 2.95
VEGFA-208	ENST00000417285	AFDN	P55196	1824 aa	Known RBP	33.44	■■■□□ 2.94
VEGFA-208	ENST00000417285	PRR5L	Q6MZQ0	368 aa		33.44	■■■□□ 2.94
VEGFA-208	ENST00000417285	PIP4K2A	P48426	406 aa	Predicted RBP	33.43	■■■□□ 2.94
VEGFA-208	ENST00000417285	NBPF26	B4DH59	902 aa		33.42	■■■□□ 2.94
VEGFA-208	ENST00000417285	KIF3C	O14782	793 aa		33.42	■■■□□ 2.94
VEGFA-208	ENST00000417285	NPHP1	O15259	732 aa		33.42	■■■□□ 2.94
VEGFA-208	ENST00000417285	NBPF10	Q6P3W6	841 aa	Known RBP	33.42	■■■□□ 2.94
VEGFA-208	ENST00000417285	NBPF15	Q8N660	670 aa		33.42	■■■□□ 2.94
VEGFA-208	ENST00000417285	CNBD1	Q8NA66	436 aa		33.42	■■■□□ 2.94
VEGFA-208	ENST00000417285	RNF181	Q9P0P0	153 aa		33.41	■■■□□ 2.94
VEGFA-208	ENST00000417285	MYBBP1A	Q9BQG0	1328 aa	Known RBP	33.4	■■■□□ 2.94
VEGFA-208	ENST00000417285	ST5	P78524	1137 aa		33.39	■■■□□ 2.94
VEGFA-208	ENST00000417285	EIF4A1	P60842	406 aa	Known RBP	33.38	■■■□□ 2.93
VEGFA-208	ENST00000417285	ZNF622	Q969S3	477 aa	Known RBP eCLIP	33.38	■■■□□ 2.93	3e-13	■□□□□ 10.7
VEGFA-208	ENST00000417285	SCN7A	Q01118	1682 aa		33.37	■■■□□ 2.93
VEGFA-208	ENST00000417285	RIPK4	P57078	832 aa		33.36	■■■□□ 2.93
VEGFA-208	ENST00000417285	NBPF5P	Q86XG9	351 aa	Predicted RBP	33.36	■■■□□ 2.93
VEGFA-208	ENST00000417285	THUMPD2	Q9BTF0	503 aa	Known RBP	33.36	■■■□□ 2.93
VEGFA-208	ENST00000417285	CEP350	Q5VT06	3117 aa		33.36	■■■□□ 2.93
VEGFA-208	ENST00000417285	LMNB1	P20700	586 aa		33.35	■■■□□ 2.93
VEGFA-208	ENST00000417285	CCDC24	Q8N4L8	307 aa		33.35	■■■□□ 2.93
VEGFA-208	ENST00000417285	KDM2B	Q8NHM5	1336 aa		33.34	■■■□□ 2.93
VEGFA-208	ENST00000417285	TOMM70	O94826	608 aa		33.34	■■■□□ 2.93
VEGFA-208	ENST00000417285	TPTE2	Q6XPS3	522 aa		33.34	■■■□□ 2.93
VEGFA-208	ENST00000417285	ZC3H4	Q9UPT8	1303 aa	Known RBP	33.33	■■■□□ 2.93
VEGFA-208	ENST00000417285	LMOD3	Q0VAK6	560 aa		33.33	■■■□□ 2.93
VEGFA-208	ENST00000417285	CNKSR1	Q969H4	720 aa		33.33	■■■□□ 2.93
VEGFA-208	ENST00000417285	BABAM1	Q9NWV8	329 aa		33.33	■■■□□ 2.93

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms