RNA–Protein interactions for RNA: ENST00000417122.6

ITGB1-204, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-204ENST00000417122 CHD4Q14839 1912 aa20.72■□□□□ 0.91
ITGB1-204ENST00000417122 MAPK8IP3Q9UPT6 1336 aa20.71■□□□□ 0.91
ITGB1-204ENST00000417122 ZPR1O75312 459 aa20.7■□□□□ 0.9
ITGB1-204ENST00000417122 CANXP27824 592 aaKnown RBP20.7■□□□□ 0.9
ITGB1-204ENST00000417122 FKBP8Q14318 412 aa20.7■□□□□ 0.9
ITGB1-204ENST00000417122 PARP3Q9Y6F1 533 aa20.7■□□□□ 0.9
ITGB1-204ENST00000417122 COL15A1P39059 1388 aa20.7■□□□□ 0.9
ITGB1-204ENST00000417122 NFE2L2Q16236 605 aa20.69■□□□□ 0.9
ITGB1-204ENST00000417122 USPL1Q5W0Q7 1092 aa20.69■□□□□ 0.9
ITGB1-204ENST00000417122 KIF13BQ9NQT8 1826 aa20.69■□□□□ 0.9
ITGB1-204ENST00000417122 YBX3P16989 372 aaKnown RBP eCLIP20.68■□□□□ 0.9
ITGB1-204ENST00000417122 TAF7Q15545 349 aaPredicted RBP20.68■□□□□ 0.9
ITGB1-204ENST00000417122 PRKRIP1Q9H875 184 aaPredicted RBP20.68■□□□□ 0.9
ITGB1-204ENST00000417122 NARFQ9UHQ1 456 aa20.67■□□□□ 0.9
ITGB1-204ENST00000417122 GRIN3BO60391 1043 aa20.66■□□□□ 0.9
ITGB1-204ENST00000417122 EIF5P55010 431 aaKnown RBP20.66■□□□□ 0.9
ITGB1-204ENST00000417122 C10orf71Q711Q0 1435 aa20.65■□□□□ 0.9
ITGB1-204ENST00000417122 A0A087WZG4 1122 aa20.64■□□□□ 0.89
ITGB1-204ENST00000417122 TM4SF1P30408 202 aa20.64■□□□□ 0.89
ITGB1-204ENST00000417122 TGFB2P61812 414 aa20.64■□□□□ 0.89
ITGB1-204ENST00000417122 DDR1Q08345 913 aa20.64■□□□□ 0.89
ITGB1-204ENST00000417122 MIS18AQ9NYP9 233 aa20.64■□□□□ 0.89
ITGB1-204ENST00000417122 USP16Q9Y5T5 823 aa20.64■□□□□ 0.89
ITGB1-204ENST00000417122 N4BP2Q86UW6 1770 aaPredicted RBP20.64■□□□□ 0.89
ITGB1-204ENST00000417122 KIAA1551Q9HCM1 1747 aa20.64■□□□□ 0.89
ITGB1-204ENST00000417122 UTRNP46939 3433 aa20.63■□□□□ 0.89
ITGB1-204ENST00000417122 PRAMEF22A3QJZ6 481 aa20.63■□□□□ 0.89
ITGB1-204ENST00000417122 A1BGP04217 495 aa20.63■□□□□ 0.89
ITGB1-204ENST00000417122 SNRPA1P09661 255 aaKnown RBP20.63■□□□□ 0.89
ITGB1-204ENST00000417122 IL6STP40189 918 aaPredicted RBP20.63■□□□□ 0.89
ITGB1-204ENST00000417122 PNISRQ8TF01 805 aaKnown RBP20.63■□□□□ 0.89
ITGB1-204ENST00000417122 ZNF330Q9Y3S2 320 aaPredicted RBP20.63■□□□□ 0.89
ITGB1-204ENST00000417122 PXDNLA1KZ92 1463 aa20.62■□□□□ 0.89
ITGB1-204ENST00000417122 KDM3BQ7LBC6 1761 aa20.62■□□□□ 0.89
ITGB1-204ENST00000417122 POLRMTO00411 1230 aaKnown RBP20.62■□□□□ 0.89
ITGB1-204ENST00000417122 WDR43Q15061 677 aaKnown RBP eCLIP20.62■□□□□ 0.89
ITGB1-204ENST00000417122 THUMPD2Q9BTF0 503 aaKnown RBP20.62■□□□□ 0.89
ITGB1-204ENST00000417122 BCL2L12Q9HB09 334 aa20.62■□□□□ 0.89
ITGB1-204ENST00000417122 WWC3Q9ULE0 1092 aa20.62■□□□□ 0.89
ITGB1-204ENST00000417122 RIPK4P57078 832 aa20.61■□□□□ 0.89
ITGB1-204ENST00000417122 NPM2Q86SE8 214 aaKnown RBP20.61■□□□□ 0.89
ITGB1-204ENST00000417122 TMPOP42166 694 aaKnown RBP20.6■□□□□ 0.89
ITGB1-204ENST00000417122 NFIXQ14938 502 aa20.6■□□□□ 0.89
ITGB1-204ENST00000417122 CCDC146Q8IYE0 955 aa20.6■□□□□ 0.89
ITGB1-204ENST00000417122 A0A0G2JLW4 131 aa20.59■□□□□ 0.89
ITGB1-204ENST00000417122 TBC1D2BQ9UPU7 963 aa20.59■□□□□ 0.89
ITGB1-204ENST00000417122 AFDNP55196 1824 aaKnown RBP20.59■□□□□ 0.89
ITGB1-204ENST00000417122 SCN7AQ01118 1682 aa20.58■□□□□ 0.89
ITGB1-204ENST00000417122 PIP4K2AP48426 406 aaPredicted RBP20.58■□□□□ 0.89
ITGB1-204ENST00000417122 RUNDC1Q96C34 613 aa20.58■□□□□ 0.89
ITGB1-204ENST00000417122 ADAMTS8Q9UP79 889 aa20.58■□□□□ 0.89
ITGB1-204ENST00000417122 LAMB4A4D0S4 1761 aa20.57■□□□□ 0.88
ITGB1-204ENST00000417122 ZNF316A6NFI3 1004 aaPredicted RBP20.57■□□□□ 0.88
ITGB1-204ENST00000417122 DPEP1P16444 411 aa20.57■□□□□ 0.88
ITGB1-204ENST00000417122 LMOD3Q0VAK6 560 aa20.57■□□□□ 0.88
ITGB1-204ENST00000417122 NRXN2Q9P2S2 1712 aa20.56■□□□□ 0.88
ITGB1-204ENST00000417122 EIF4A1P60842 406 aaKnown RBP20.56■□□□□ 0.88
ITGB1-204ENST00000417122 BICDL1Q6ZP65 573 aa20.56■□□□□ 0.88
ITGB1-204ENST00000417122 ZNF784Q8NCA9 323 aaPredicted RBP20.56■□□□□ 0.88
ITGB1-204ENST00000417122 RRP7AQ9Y3A4 280 aaKnown RBP20.56■□□□□ 0.88
ITGB1-204ENST00000417122 GOLGB1Q14789 3259 aaKnown RBP20.56■□□□□ 0.88
ITGB1-204ENST00000417122 BRCA1P38398 1863 aaKnown RBP20.56■□□□□ 0.88
ITGB1-204ENST00000417122 BCORQ6W2J9 1755 aa20.55■□□□□ 0.88
ITGB1-204ENST00000417122 SERPINB2P05120 415 aa20.55■□□□□ 0.88
ITGB1-204ENST00000417122 NEUROD2Q15784 382 aa20.55■□□□□ 0.88
ITGB1-204ENST00000417122 DZIP3Q86Y13 1208 aaKnown RBP20.55■□□□□ 0.88
ITGB1-204ENST00000417122 GIGYF1O75420 1035 aaPredicted RBP20.54■□□□□ 0.88
ITGB1-204ENST00000417122 CAMTA2O94983 1202 aa20.54■□□□□ 0.88
ITGB1-204ENST00000417122 TBC1D9BQ66K14 1250 aa20.54■□□□□ 0.88
ITGB1-204ENST00000417122 BCS1LQ9Y276 419 aa20.54■□□□□ 0.88
ITGB1-204ENST00000417122 NBPF26B4DH59 902 aa20.53■□□□□ 0.88
ITGB1-204ENST00000417122 KCNA3P22001 575 aa20.53■□□□□ 0.88
ITGB1-204ENST00000417122 NBPF10Q6P3W6 841 aaKnown RBP20.53■□□□□ 0.88
ITGB1-204ENST00000417122 NBPF15Q8N660 670 aa20.53■□□□□ 0.88
ITGB1-204ENST00000417122 TSPYL4Q9UJ04 414 aa20.53■□□□□ 0.88
ITGB1-204ENST00000417122 BABAM1Q9NWV8 329 aa20.51■□□□□ 0.87
ITGB1-204ENST00000417122 PIM2Q9P1W9 311 aa20.51■□□□□ 0.87
ITGB1-204ENST00000417122 CHRNA5P30532 468 aa20.5■□□□□ 0.87
ITGB1-204ENST00000417122 TRIM35Q9UPQ4 493 aa20.5■□□□□ 0.87
ITGB1-204ENST00000417122 CARMIL3Q8ND23 1372 aa20.49■□□□□ 0.87
ITGB1-204ENST00000417122 ARFGEF1Q9Y6D6 1849 aa20.49■□□□□ 0.87
ITGB1-204ENST00000417122 SETDB2Q96T68 719 aa20.49■□□□□ 0.87
ITGB1-204ENST00000417122 CLEC4GQ6UXB4 293 aa20.48■□□□□ 0.87
ITGB1-204ENST00000417122 ZNF652Q9Y2D9 606 aa20.48■□□□□ 0.87
ITGB1-204ENST00000417122 DALRD3Q5D0E6 543 aaKnown RBP20.47■□□□□ 0.87
ITGB1-204ENST00000417122 PRR5LQ6MZQ0 368 aa20.46■□□□□ 0.87
ITGB1-204ENST00000417122 DLEC1Q9Y238 1755 aa20.46■□□□□ 0.87
ITGB1-204ENST00000417122 RGL2O15211 777 aa20.45■□□□□ 0.86
ITGB1-204ENST00000417122 CCDC184Q52MB2 194 aa20.45■□□□□ 0.86
ITGB1-204ENST00000417122 ARHGAP27Q6ZUM4 889 aa20.45■□□□□ 0.86
ITGB1-204ENST00000417122 NGEFQ8N5V2 710 aa20.45■□□□□ 0.86
ITGB1-204ENST00000417122 LAS1LQ9Y4W2 734 aaKnown RBP20.45■□□□□ 0.86
ITGB1-204ENST00000417122 ANKRD31Q8N7Z5 1873 aa20.45■□□□□ 0.86
ITGB1-204ENST00000417122 CHL1O00533 1208 aa20.44■□□□□ 0.86
ITGB1-204ENST00000417122 APAF1O14727 1248 aa20.44■□□□□ 0.86
ITGB1-204ENST00000417122 NPHP1O15259 732 aa20.44■□□□□ 0.86
ITGB1-204ENST00000417122 MYL6BP14649 208 aa20.44■□□□□ 0.86
ITGB1-204ENST00000417122 C2CD5Q86YS7 1000 aa20.44■□□□□ 0.86
ITGB1-204ENST00000417122 CCDC24Q8N4L8 307 aa20.44■□□□□ 0.86
ITGB1-204ENST00000417122 H0YIN7 160 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms