RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 KIAA1551Q9HCM1 1747 aa25.32■■□□□ 1.64
SF3A1-202ENST00000411423 NFE2L2Q16236 605 aa25.31■■□□□ 1.64
SF3A1-202ENST00000411423 PELP1Q8IZL8 1130 aaKnown RBP25.31■■□□□ 1.64
SF3A1-202ENST00000411423 FMNL2Q96PY5 1086 aa25.31■■□□□ 1.64
SF3A1-202ENST00000411423 THUMPD2Q9BTF0 503 aaKnown RBP25.31■■□□□ 1.64
SF3A1-202ENST00000411423 COL15A1P39059 1388 aa25.31■■□□□ 1.64
SF3A1-202ENST00000411423 CANXP27824 592 aaKnown RBP25.3■■□□□ 1.64
SF3A1-202ENST00000411423 USPL1Q5W0Q7 1092 aa25.3■■□□□ 1.64
SF3A1-202ENST00000411423 MIS18AQ9NYP9 233 aa25.3■■□□□ 1.64
SF3A1-202ENST00000411423 KIF13BQ9NQT8 1826 aa25.3■■□□□ 1.64
SF3A1-202ENST00000411423 DDR1Q08345 913 aa25.29■■□□□ 1.64
SF3A1-202ENST00000411423 BCL2L12Q9HB09 334 aa25.29■■□□□ 1.64
SF3A1-202ENST00000411423 EIF5P55010 431 aaKnown RBP25.28■■□□□ 1.64
SF3A1-202ENST00000411423 WWC3Q9ULE0 1092 aa25.28■■□□□ 1.64
SF3A1-202ENST00000411423 C10orf71Q711Q0 1435 aa25.28■■□□□ 1.64
SF3A1-202ENST00000411423 A1BGP04217 495 aa25.27■■□□□ 1.64
SF3A1-202ENST00000411423 USP16Q9Y5T5 823 aa25.27■■□□□ 1.64
SF3A1-202ENST00000411423 STARD3NLO95772 234 aa25.26■■□□□ 1.63
SF3A1-202ENST00000411423 NARFQ9UHQ1 456 aa25.26■■□□□ 1.63
SF3A1-202ENST00000411423 PXDNLA1KZ92 1463 aa25.26■■□□□ 1.63
SF3A1-202ENST00000411423 NEFMP07197 916 aa25.25■■□□□ 1.63
SF3A1-202ENST00000411423 TM4SF1P30408 202 aa25.25■■□□□ 1.63
SF3A1-202ENST00000411423 TAF7Q15545 349 aaPredicted RBP25.25■■□□□ 1.63
SF3A1-202ENST00000411423 CCDC146Q8IYE0 955 aa25.25■■□□□ 1.63
SF3A1-202ENST00000411423 MAPK8IP3Q9UPT6 1336 aa25.25■■□□□ 1.63
SF3A1-202ENST00000411423 KDM3BQ7LBC6 1761 aa25.25■■□□□ 1.63
SF3A1-202ENST00000411423 PIP4K2AP48426 406 aaPredicted RBP25.24■■□□□ 1.63
SF3A1-202ENST00000411423 TEX13AQ9BXU3 409 aaPredicted RBP25.24■■□□□ 1.63
SF3A1-202ENST00000411423 PARP3Q9Y6F1 533 aa25.24■■□□□ 1.63
SF3A1-202ENST00000411423 N4BP2Q86UW6 1770 aaPredicted RBP25.23■■□□□ 1.63
SF3A1-202ENST00000411423 POLRMTO00411 1230 aaKnown RBP25.23■■□□□ 1.63
SF3A1-202ENST00000411423 ZPR1O75312 459 aa25.23■■□□□ 1.63
SF3A1-202ENST00000411423 PNNQ9H307 717 aaKnown RBP25.22■■□□□ 1.63
SF3A1-202ENST00000411423 CHD4Q14839 1912 aa25.22■■□□□ 1.63
SF3A1-202ENST00000411423 TMPOP42166 694 aaKnown RBP25.21■■□□□ 1.63
SF3A1-202ENST00000411423 NFIXQ14938 502 aa25.21■■□□□ 1.63
SF3A1-202ENST00000411423 ADAMTS8Q9UP79 889 aa25.21■■□□□ 1.63
SF3A1-202ENST00000411423 SCN7AQ01118 1682 aa25.2■■□□□ 1.63
SF3A1-202ENST00000411423 RIPK4P57078 832 aa25.2■■□□□ 1.62
SF3A1-202ENST00000411423 RRP7AQ9Y3A4 280 aaKnown RBP25.2■■□□□ 1.62
SF3A1-202ENST00000411423 A0A0G2JLW4 131 aa25.19■■□□□ 1.62
SF3A1-202ENST00000411423 SNRPA1P09661 255 aaKnown RBP25.19■■□□□ 1.62
SF3A1-202ENST00000411423 IL6STP40189 918 aaPredicted RBP25.19■■□□□ 1.62
SF3A1-202ENST00000411423 TBC1D2BQ9UPU7 963 aa25.19■■□□□ 1.62
SF3A1-202ENST00000411423 ZNF330Q9Y3S2 320 aaPredicted RBP25.19■■□□□ 1.62
SF3A1-202ENST00000411423 ZNF316A6NFI3 1004 aaPredicted RBP25.18■■□□□ 1.62
SF3A1-202ENST00000411423 CCDC184Q52MB2 194 aa25.18■■□□□ 1.62
SF3A1-202ENST00000411423 AFDNP55196 1824 aaKnown RBP25.18■■□□□ 1.62
SF3A1-202ENST00000411423 NRXN2Q9P2S2 1712 aa25.17■■□□□ 1.62
SF3A1-202ENST00000411423 NBPF26B4DH59 902 aa25.17■■□□□ 1.62
SF3A1-202ENST00000411423 DPEP1P16444 411 aa25.17■■□□□ 1.62
SF3A1-202ENST00000411423 NBPF10Q6P3W6 841 aaKnown RBP25.17■■□□□ 1.62
SF3A1-202ENST00000411423 NBPF15Q8N660 670 aa25.17■■□□□ 1.62
SF3A1-202ENST00000411423 KCNA3P22001 575 aa25.16■■□□□ 1.62
SF3A1-202ENST00000411423 EIF4A1P60842 406 aaKnown RBP25.16■■□□□ 1.62
SF3A1-202ENST00000411423 TGFB2P61812 414 aa25.16■■□□□ 1.62
SF3A1-202ENST00000411423 WDR43Q15061 677 aaKnown RBP eCLIP25.16■■□□□ 1.62
SF3A1-202ENST00000411423 LAMB4A4D0S4 1761 aa25.16■■□□□ 1.62
SF3A1-202ENST00000411423 CAMTA2O94983 1202 aa25.15■■□□□ 1.62
SF3A1-202ENST00000411423 TBC1D9BQ66K14 1250 aa25.15■■□□□ 1.62
SF3A1-202ENST00000411423 BCORQ6W2J9 1755 aa25.14■■□□□ 1.62
SF3A1-202ENST00000411423 A0A087WZG4 1122 aa25.14■■□□□ 1.62
SF3A1-202ENST00000411423 GRIN3BO60391 1043 aa25.14■■□□□ 1.62
SF3A1-202ENST00000411423 NEUROD2Q15784 382 aa25.14■■□□□ 1.62
SF3A1-202ENST00000411423 PNISRQ8TF01 805 aaKnown RBP25.14■■□□□ 1.62
SF3A1-202ENST00000411423 RUNDC1Q96C34 613 aa25.14■■□□□ 1.62
SF3A1-202ENST00000411423 BRCA1P38398 1863 aaKnown RBP25.14■■□□□ 1.61
SF3A1-202ENST00000411423 GIGYF1O75420 1035 aaPredicted RBP25.13■■□□□ 1.61
SF3A1-202ENST00000411423 BICDL1Q6ZP65 573 aa25.13■■□□□ 1.61
SF3A1-202ENST00000411423 TRIM35Q9UPQ4 493 aa25.13■■□□□ 1.61
SF3A1-202ENST00000411423 ZNF784Q8NCA9 323 aaPredicted RBP25.12■■□□□ 1.61
SF3A1-202ENST00000411423 CARMIL3Q8ND23 1372 aa25.12■■□□□ 1.61
SF3A1-202ENST00000411423 SERPINB2P05120 415 aa25.11■■□□□ 1.61
SF3A1-202ENST00000411423 CHRNA5P30532 468 aa25.1■■□□□ 1.61
SF3A1-202ENST00000411423 DZIP3Q86Y13 1208 aaKnown RBP25.1■■□□□ 1.61
SF3A1-202ENST00000411423 TSPYL4Q9UJ04 414 aa25.09■■□□□ 1.61
SF3A1-202ENST00000411423 BCS1LQ9Y276 419 aa25.08■■□□□ 1.61
SF3A1-202ENST00000411423 LMOD3Q0VAK6 560 aa25.06■■□□□ 1.6
SF3A1-202ENST00000411423 CCDC24Q8N4L8 307 aa25.06■■□□□ 1.6
SF3A1-202ENST00000411423 ANKRD31Q8N7Z5 1873 aa25.05■■□□□ 1.6
SF3A1-202ENST00000411423 KRT24Q2M2I5 525 aa25.03■■□□□ 1.6
SF3A1-202ENST00000411423 APAF1O14727 1248 aa25.02■■□□□ 1.6
SF3A1-202ENST00000411423 HLFQ16534 295 aa25.02■■□□□ 1.6
SF3A1-202ENST00000411423 PRR5LQ6MZQ0 368 aa25.02■■□□□ 1.6
SF3A1-202ENST00000411423 NGEFQ8N5V2 710 aa25.02■■□□□ 1.6
SF3A1-202ENST00000411423 BABAM1Q9NWV8 329 aa25.02■■□□□ 1.6
SF3A1-202ENST00000411423 DLEC1Q9Y238 1755 aa25.01■■□□□ 1.59
SF3A1-202ENST00000411423 ARFGEF1Q9Y6D6 1849 aa25.01■■□□□ 1.59
SF3A1-202ENST00000411423 CHL1O00533 1208 aa25.01■■□□□ 1.59
SF3A1-202ENST00000411423 NPM2Q86SE8 214 aaKnown RBP25.01■■□□□ 1.59
SF3A1-202ENST00000411423 PIM2Q9P1W9 311 aa25.01■■□□□ 1.59
SF3A1-202ENST00000411423 ADCY9O60503 1353 aa25.01■■□□□ 1.59
SF3A1-202ENST00000411423 TTLL7Q6ZT98 887 aa25■■□□□ 1.59
SF3A1-202ENST00000411423 LRP10Q7Z4F1 713 aa25■■□□□ 1.59
SF3A1-202ENST00000411423 COL11A2P13942 1736 aaPredicted RBP24.99■■□□□ 1.59
SF3A1-202ENST00000411423 MYL6BP14649 208 aa24.99■■□□□ 1.59
SF3A1-202ENST00000411423 PDIA6Q15084 440 aa24.99■■□□□ 1.59
SF3A1-202ENST00000411423 SETDB2Q96T68 719 aa24.99■■□□□ 1.59
SF3A1-202ENST00000411423 LAS1LQ9Y4W2 734 aaKnown RBP24.99■■□□□ 1.59
SF3A1-202ENST00000411423 SENP3-EIF4A1A0A087X0R7 540 aa24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 175.9 ms