RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 DNAJC2Q99543 621 aaKnown RBP14.22□□□□□ -0.13
HMGB1-206ENST00000405805 AACSQ86V21 672 aa14.21□□□□□ -0.13
HMGB1-206ENST00000405805 CCAR2Q8N163 923 aaKnown RBP14.21□□□□□ -0.13
HMGB1-206ENST00000405805 TRIM34Q9BYJ4 488 aa14.21□□□□□ -0.13
HMGB1-206ENST00000405805 INO80Q9ULG1 1556 aaPredicted RBP14.21□□□□□ -0.13
HMGB1-206ENST00000405805 BOLA2Q9H3K6 86 aa14.21□□□□□ -0.13
HMGB1-206ENST00000405805 OFD1O75665 1012 aa14.21□□□□□ -0.14
HMGB1-206ENST00000405805 ZFP91Q96JP5 570 aaPredicted RBP14.21□□□□□ -0.14
HMGB1-206ENST00000405805 NEUROD6Q96NK8 337 aa14.21□□□□□ -0.14
HMGB1-206ENST00000405805 KIF2CQ99661 725 aa14.21□□□□□ -0.14
HMGB1-206ENST00000405805 PDRG1Q9NUG6 133 aa14.21□□□□□ -0.14
HMGB1-206ENST00000405805 ZKSCAN5Q9Y2L8 839 aa14.21□□□□□ -0.14
HMGB1-206ENST00000405805 TSPOAP1O95153 1857 aa14.2□□□□□ -0.14
HMGB1-206ENST00000405805 KIDINS220Q9ULH0 1771 aa14.2□□□□□ -0.14
HMGB1-206ENST00000405805 C1orf141Q5JVX7 400 aa14.2□□□□□ -0.14
HMGB1-206ENST00000405805 CYP46A1Q9Y6A2 500 aa14.2□□□□□ -0.14
HMGB1-206ENST00000405805 MYL6BP14649 208 aa14.2□□□□□ -0.14
HMGB1-206ENST00000405805 TEX35Q5T0J7 233 aa14.2□□□□□ -0.14
HMGB1-206ENST00000405805 TOMM22Q9NS69 142 aa14.2□□□□□ -0.14
HMGB1-206ENST00000405805 GORABQ5T7V8 394 aa14.2□□□□□ -0.14
HMGB1-206ENST00000405805 SASS6Q6UVJ0 657 aa14.2□□□□□ -0.14
HMGB1-206ENST00000405805 PHAXQ9H814 394 aaKnown RBP14.2□□□□□ -0.14
HMGB1-206ENST00000405805 HTATSF1O43719 755 aaKnown RBP14.19□□□□□ -0.14
HMGB1-206ENST00000405805 RIC3Q7Z5B4 369 aa14.19□□□□□ -0.14
HMGB1-206ENST00000405805 STK11IPQ8N1F8 1099 aa14.19□□□□□ -0.14
HMGB1-206ENST00000405805 PI4KAP2A4QPH2 592 aa14.19□□□□□ -0.14
HMGB1-206ENST00000405805 GNL2Q13823 731 aaKnown RBP14.19□□□□□ -0.14
HMGB1-206ENST00000405805 PI4KAP1Q8N8J0 262 aa14.19□□□□□ -0.14
HMGB1-206ENST00000405805 NRDCO43847 1150 aa14.19□□□□□ -0.14
HMGB1-206ENST00000405805 DNM1Q05193 864 aaKnown RBP14.19□□□□□ -0.14
HMGB1-206ENST00000405805 MPRIPQ6WCQ1 1025 aa14.19□□□□□ -0.14
HMGB1-206ENST00000405805 PA2G4Q9UQ80 394 aaKnown RBP14.19□□□□□ -0.14
HMGB1-206ENST00000405805 FILIP1Q7Z7B0 1213 aa14.18□□□□□ -0.14
HMGB1-206ENST00000405805 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.18□□□□□ -0.14
HMGB1-206ENST00000405805 GNAT3A8MTJ3 354 aa14.18□□□□□ -0.14
HMGB1-206ENST00000405805 STX6O43752 255 aa14.18□□□□□ -0.14
HMGB1-206ENST00000405805 CHMLP26374 656 aa14.18□□□□□ -0.14
HMGB1-206ENST00000405805 ADGRB3O60242 1522 aa14.17□□□□□ -0.14
HMGB1-206ENST00000405805 UNC5CLQ8IV45 518 aa14.17□□□□□ -0.14
HMGB1-206ENST00000405805 GJB2P29033 226 aa14.17□□□□□ -0.14
HMGB1-206ENST00000405805 TNMDQ9H2S6 317 aa14.17□□□□□ -0.14
HMGB1-206ENST00000405805 RAB11FIP3O75154 756 aa14.17□□□□□ -0.14
HMGB1-206ENST00000405805 LETM1O95202 739 aaPredicted RBP14.17□□□□□ -0.14
HMGB1-206ENST00000405805 MAP3K19Q56UN5 1328 aa14.16□□□□□ -0.14
HMGB1-206ENST00000405805 KCNA6P17658 529 aa14.16□□□□□ -0.14
HMGB1-206ENST00000405805 GUCY1B3Q02153 619 aa14.16□□□□□ -0.14
HMGB1-206ENST00000405805 TPD52L1Q16890 204 aaPredicted RBP14.16□□□□□ -0.14
HMGB1-206ENST00000405805 ZNF530Q6P9A1 599 aaPredicted RBP14.16□□□□□ -0.14
HMGB1-206ENST00000405805 LAMC1P11047 1609 aa14.16□□□□□ -0.14
HMGB1-206ENST00000405805 ZBTB9Q96C00 473 aa14.16□□□□□ -0.14
HMGB1-206ENST00000405805 C16orf45Q96MC5 204 aaPredicted RBP14.16□□□□□ -0.14
HMGB1-206ENST00000405805 DYNC1I1O14576 645 aa14.16□□□□□ -0.14
HMGB1-206ENST00000405805 CCDC192P0DO97 292 aa14.16□□□□□ -0.14
HMGB1-206ENST00000405805 GPS2Q13227 327 aa14.16□□□□□ -0.14
HMGB1-206ENST00000405805 CREBRFQ8IUR6 639 aa14.16□□□□□ -0.14
HMGB1-206ENST00000405805 RHPN1Q8TCX5 695 aa14.16□□□□□ -0.14
HMGB1-206ENST00000405805 LRRC2Q9BYS8 371 aa14.16□□□□□ -0.14
HMGB1-206ENST00000405805 TMX1Q9H3N1 280 aa14.16□□□□□ -0.14
HMGB1-206ENST00000405805 LIMCH1Q9UPQ0 1083 aa14.16□□□□□ -0.14
HMGB1-206ENST00000405805 PTPRCP08575 1304 aa14.16□□□□□ -0.14
HMGB1-206ENST00000405805 PRR36Q9H6K5 1346 aa14.16□□□□□ -0.14
HMGB1-206ENST00000405805 CCDC183Q5T5S1 534 aa14.15□□□□□ -0.14
HMGB1-206ENST00000405805 ZC3H6P61129 1189 aaKnown RBP14.15□□□□□ -0.14
HMGB1-206ENST00000405805 TIGD1Q96MW7 591 aa14.15□□□□□ -0.14
HMGB1-206ENST00000405805 NLRP2Q9NX02 1062 aa14.15□□□□□ -0.14
HMGB1-206ENST00000405805 ABCC4O15439 1325 aa14.15□□□□□ -0.14
HMGB1-206ENST00000405805 PIP4K2AP48426 406 aaPredicted RBP14.15□□□□□ -0.14
HMGB1-206ENST00000405805 AK2P54819 239 aa14.15□□□□□ -0.14
HMGB1-206ENST00000405805 KRT85P78386 507 aa14.15□□□□□ -0.14
HMGB1-206ENST00000405805 KIF1BPQ96EK5 621 aa14.15□□□□□ -0.14
HMGB1-206ENST00000405805 IBSPP21815 317 aaPredicted RBP14.15□□□□□ -0.14
HMGB1-206ENST00000405805 RNF20Q5VTR2 975 aa14.15□□□□□ -0.14
HMGB1-206ENST00000405805 IQGAP1P46940 1657 aa14.14□□□□□ -0.15
HMGB1-206ENST00000405805 NEXNQ0ZGT2 675 aa14.14□□□□□ -0.15
HMGB1-206ENST00000405805 BLOC1S2Q6QNY1 142 aa14.14□□□□□ -0.15
HMGB1-206ENST00000405805 EYA1Q99502 592 aa14.14□□□□□ -0.15
HMGB1-206ENST00000405805 SDF4Q9BRK5 362 aa14.14□□□□□ -0.15
HMGB1-206ENST00000405805 ZNF445P59923 1031 aa14.14□□□□□ -0.15
HMGB1-206ENST00000405805 HSP90AB4PQ58FF6 505 aa14.14□□□□□ -0.15
HMGB1-206ENST00000405805 ANKLE2Q86XL3 938 aa14.14□□□□□ -0.15
HMGB1-206ENST00000405805 SPATA32Q96LK8 384 aa14.14□□□□□ -0.15
HMGB1-206ENST00000405805 NUP62CLQ9H1M0 184 aa14.14□□□□□ -0.15
HMGB1-206ENST00000405805 NOL7Q9UMY1 257 aaKnown RBP14.14□□□□□ -0.15
HMGB1-206ENST00000405805 GLI2P10070 1586 aa14.14□□□□□ -0.15
HMGB1-206ENST00000405805 GTF2F1P35269 517 aaKnown RBP eCLIP14.13□□□□□ -0.15
HMGB1-206ENST00000405805 NOLC1Q14978 699 aaKnown RBP eCLIP14.13□□□□□ -0.15
HMGB1-206ENST00000405805 CCDC94Q9BW85 323 aaPredicted RBP14.13□□□□□ -0.15
HMGB1-206ENST00000405805 CHL1O00533 1208 aa14.13□□□□□ -0.15
HMGB1-206ENST00000405805 CALRP27797 417 aaKnown RBP14.13□□□□□ -0.15
HMGB1-206ENST00000405805 SETQ01105 290 aaPredicted RBP14.13□□□□□ -0.15
HMGB1-206ENST00000405805 CCDC85AQ96PX6 553 aaPredicted RBP14.13□□□□□ -0.15
HMGB1-206ENST00000405805 PHF8Q9UPP1 1060 aa14.13□□□□□ -0.15
HMGB1-206ENST00000405805 TULP4Q9NRJ4 1543 aa14.13□□□□□ -0.15
HMGB1-206ENST00000405805 BTBD11A6QL63 1104 aa14.13□□□□□ -0.15
HMGB1-206ENST00000405805 SYT1P21579 422 aa14.13□□□□□ -0.15
HMGB1-206ENST00000405805 PROSER2Q86WR7 435 aaPredicted RBP14.13□□□□□ -0.15
HMGB1-206ENST00000405805 CHPF2Q9P2E5 772 aa14.13□□□□□ -0.15
HMGB1-206ENST00000405805 ATP8B2P98198 1209 aa14.12□□□□□ -0.15
HMGB1-206ENST00000405805 NOM1Q5C9Z4 860 aaKnown RBP14.12□□□□□ -0.15
HMGB1-206ENST00000405805 ZSCAN22P10073 491 aaPredicted RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms