RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 KRT28Q7Z3Y7 464 aa22.08■■□□□ 1.13
USP48-204ENST00000400301 BRPF1P55201 1214 aaPredicted RBP22.08■■□□□ 1.12
USP48-204ENST00000400301 AATKQ6ZMQ8 1374 aa22.08■■□□□ 1.12
USP48-204ENST00000400301 FAM135BQ49AJ0 1406 aa22.07■■□□□ 1.12
USP48-204ENST00000400301 ANAPC15P60006 121 aa22.07■■□□□ 1.12
USP48-204ENST00000400301 ATP7BP35670 1465 aa22.07■■□□□ 1.12
USP48-204ENST00000400301 ABCA9Q8IUA7 1624 aa22.07■■□□□ 1.12
USP48-204ENST00000400301 SYNE3Q6ZMZ3 975 aa22.07■■□□□ 1.12
USP48-204ENST00000400301 GLI2P10070 1586 aa22.06■■□□□ 1.12
USP48-204ENST00000400301 KIAA0232Q92628 1395 aa22.06■■□□□ 1.12
USP48-204ENST00000400301 CHMLP26374 656 aa22.06■■□□□ 1.12
USP48-204ENST00000400301 ZSCAN23Q3MJ62 389 aa22.06■■□□□ 1.12
USP48-204ENST00000400301 EVI5LQ96CN4 794 aa22.06■■□□□ 1.12
USP48-204ENST00000400301 ZNF853P0CG23 659 aa22.05■■□□□ 1.12
USP48-204ENST00000400301 AKAP4Q5JQC9 854 aa22.05■■□□□ 1.12
USP48-204ENST00000400301 SOS1Q07889 1333 aaPredicted RBP22.05■■□□□ 1.12
USP48-204ENST00000400301 CCDC192P0DO97 292 aa22.05■■□□□ 1.12
USP48-204ENST00000400301 CCDC34Q96HJ3 373 aa22.05■■□□□ 1.12
USP48-204ENST00000400301 KRT32Q14532 448 aa22.05■■□□□ 1.12
USP48-204ENST00000400301 PNMA6EA0A0J9YXQ4 647 aa22.04■■□□□ 1.12
USP48-204ENST00000400301 PTCD1O75127 700 aaKnown RBP22.04■■□□□ 1.12
USP48-204ENST00000400301 TRIM29Q14134 588 aa22.04■■□□□ 1.12
USP48-204ENST00000400301 SDF4Q9BRK5 362 aa22.04■■□□□ 1.12
USP48-204ENST00000400301 SH2B1Q9NRF2 756 aaPredicted RBP22.04■■□□□ 1.12
USP48-204ENST00000400301 NFXL1Q6ZNB6 911 aa22.04■■□□□ 1.12
USP48-204ENST00000400301 TRIM5Q9C035 493 aa22.04■■□□□ 1.12
USP48-204ENST00000400301 CCDC158Q5M9N0 1113 aa22.03■■□□□ 1.12
USP48-204ENST00000400301 PRR36Q9H6K5 1346 aa22.03■■□□□ 1.12
USP48-204ENST00000400301 RTL1A6NKG5 1358 aa22.03■■□□□ 1.12
USP48-204ENST00000400301 SPC24Q8NBT2 197 aa22.03■■□□□ 1.12
USP48-204ENST00000400301 PA2G4Q9UQ80 394 aaKnown RBP22.03■■□□□ 1.12
USP48-204ENST00000400301 KIF24Q5T7B8 1368 aa22.03■■□□□ 1.12
USP48-204ENST00000400301 SETBP1Q9Y6X0 1596 aa22.02■■□□□ 1.12
USP48-204ENST00000400301 FKBP4Q02790 459 aaKnown RBP eCLIP22.02■■□□□ 1.12
USP48-204ENST00000400301 JARID2Q92833 1246 aaPredicted RBP22.02■■□□□ 1.12
USP48-204ENST00000400301 CEP126Q9P2H0 1117 aa22.02■■□□□ 1.12
USP48-204ENST00000400301 CEP152O94986 1710 aa22.02■■□□□ 1.12
USP48-204ENST00000400301 STX6O43752 255 aa22.02■■□□□ 1.12
USP48-204ENST00000400301 TPM2P07951 284 aa22.02■■□□□ 1.12
USP48-204ENST00000400301 SLC39A6Q13433 755 aa22.02■■□□□ 1.12
USP48-204ENST00000400301 IP6K1Q92551 441 aa22.02■■□□□ 1.12
USP48-204ENST00000400301 SPATA32Q96LK8 384 aa22.02■■□□□ 1.12
USP48-204ENST00000400301 TNMDQ9H2S6 317 aa22.02■■□□□ 1.12
USP48-204ENST00000400301 LMTK2Q8IWU2 1503 aa22.02■■□□□ 1.12
USP48-204ENST00000400301 KSR2Q6VAB6 950 aa22.02■■□□□ 1.12
USP48-204ENST00000400301 SIRT2Q8IXJ6 389 aa22.02■■□□□ 1.12
USP48-204ENST00000400301 DDX11Q96FC9 970 aa22.02■■□□□ 1.12
USP48-204ENST00000400301 PPRC1Q5VV67 1664 aaKnown RBP22.02■■□□□ 1.12
USP48-204ENST00000400301 A0A087WZG4 1122 aa22.02■■□□□ 1.11
USP48-204ENST00000400301 CCDC57Q2TAC2 916 aa22.02■■□□□ 1.11
USP48-204ENST00000400301 ZNF592Q92610 1267 aa22.02■■□□□ 1.11
USP48-204ENST00000400301 ANTXR1Q9H6X2 564 aa22.02■■□□□ 1.11
USP48-204ENST00000400301 INO80Q9ULG1 1556 aaPredicted RBP22.02■■□□□ 1.11
USP48-204ENST00000400301 TTC39AQ5SRH9 613 aa22.01■■□□□ 1.11
USP48-204ENST00000400301 CCDC85AQ96PX6 553 aaPredicted RBP22.01■■□□□ 1.11
USP48-204ENST00000400301 KIF6Q6ZMV9 814 aa22.01■■□□□ 1.11
USP48-204ENST00000400301 KINO60870 393 aaKnown RBP22.01■■□□□ 1.11
USP48-204ENST00000400301 ALDH1L1O75891 902 aa22.01■■□□□ 1.11
USP48-204ENST00000400301 IQGAP1P46940 1657 aa22■■□□□ 1.11
USP48-204ENST00000400301 QRICH2Q9H0J4 1663 aa22■■□□□ 1.11
USP48-204ENST00000400301 ATP5J2-PTCD1G3V325 749 aa22■■□□□ 1.11
USP48-204ENST00000400301 CWF19L2Q2TBE0 894 aaKnown RBP22■■□□□ 1.11
USP48-204ENST00000400301 UBE3BQ7Z3V4 1068 aa22■■□□□ 1.11
USP48-204ENST00000400301 CCDC183Q5T5S1 534 aa22■■□□□ 1.11
USP48-204ENST00000400301 GRM8O00222 908 aa21.99■■□□□ 1.11
USP48-204ENST00000400301 AKAP17AQ02040 695 aaKnown RBP21.99■■□□□ 1.11
USP48-204ENST00000400301 NUP62CLQ9H1M0 184 aa21.99■■□□□ 1.11
USP48-204ENST00000400301 GCP02774 474 aa21.99■■□□□ 1.11
USP48-204ENST00000400301 GJB2P29033 226 aa21.99■■□□□ 1.11
USP48-204ENST00000400301 ARHGEF10O15013 1369 aa21.99■■□□□ 1.11
USP48-204ENST00000400301 FAM177BA6PVY3 158 aa21.99■■□□□ 1.11
USP48-204ENST00000400301 FMNL2Q96PY5 1086 aa21.99■■□□□ 1.11
USP48-204ENST00000400301 LGR6Q9HBX8 967 aa21.99■■□□□ 1.11
USP48-204ENST00000400301 IFNL2Q8IZJ0 200 aa21.98■■□□□ 1.11
USP48-204ENST00000400301 TULP4Q9NRJ4 1543 aa21.98■■□□□ 1.11
USP48-204ENST00000400301 ROBO2Q9HCK4 1378 aa21.98■■□□□ 1.11
USP48-204ENST00000400301 KDM4AO75164 1064 aa21.98■■□□□ 1.11
USP48-204ENST00000400301 CHRNA2Q15822 529 aa21.97■■□□□ 1.11
USP48-204ENST00000400301 XAGE3Q8WTP9 111 aa21.97■■□□□ 1.11
USP48-204ENST00000400301 CNNM1Q9NRU3 951 aa21.97■■□□□ 1.11
USP48-204ENST00000400301 COPS6Q7L5N1 327 aa21.97■■□□□ 1.11
USP48-204ENST00000400301 VSIG10Q8N0Z9 540 aa21.97■■□□□ 1.11
USP48-204ENST00000400301 LINS1Q8NG48 757 aa21.97■■□□□ 1.11
USP48-204ENST00000400301 PDIA4P13667 645 aaKnown RBP21.97■■□□□ 1.11
USP48-204ENST00000400301 ANKRD13DQ6ZTN6 518 aa21.96■■□□□ 1.11
USP48-204ENST00000400301 IL17REQ8NFR9 667 aa21.96■■□□□ 1.11
USP48-204ENST00000400301 TPM3P06753 285 aa21.96■■□□□ 1.11
USP48-204ENST00000400301 ZNF396Q96N95 335 aaPredicted RBP21.96■■□□□ 1.11
USP48-204ENST00000400301 BABAM1Q9NWV8 329 aa21.96■■□□□ 1.11
USP48-204ENST00000400301 TBC1D2BQ9UPU7 963 aa21.96■■□□□ 1.11
USP48-204ENST00000400301 LRSAM1Q6UWE0 723 aa21.95■■□□□ 1.1
USP48-204ENST00000400301 TCEANC2Q96MN5 208 aa21.95■■□□□ 1.1
USP48-204ENST00000400301 CLCN1P35523 988 aa21.95■■□□□ 1.1
USP48-204ENST00000400301 PRIM1P49642 420 aaKnown RBP21.95■■□□□ 1.1
USP48-204ENST00000400301 CAMK4Q16566 473 aa21.95■■□□□ 1.1
USP48-204ENST00000400301 NECAB1Q8N987 351 aa21.95■■□□□ 1.1
USP48-204ENST00000400301 ME1P48163 572 aa21.95■■□□□ 1.1
USP48-204ENST00000400301 DHX16O60231 1041 aaKnown RBP21.94■■□□□ 1.1
USP48-204ENST00000400301 RBM10P98175 930 aaKnown RBP21.94■■□□□ 1.1
USP48-204ENST00000400301 STK38Q15208 465 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms