RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 G2E3Q7L622 706 aa26.77■■□□□ 1.88
TRIM54-202ENST00000380075 PXDNLA1KZ92 1463 aa26.76■■□□□ 1.87
TRIM54-202ENST00000380075 ZCRB1Q8TBF4 217 aaKnown RBP26.75■■□□□ 1.87
TRIM54-202ENST00000380075 WNK3Q9BYP7 1800 aa26.75■■□□□ 1.87
TRIM54-202ENST00000380075 FLIIQ13045 1269 aa26.75■■□□□ 1.87
TRIM54-202ENST00000380075 HOXB7P09629 217 aa26.73■■□□□ 1.87
TRIM54-202ENST00000380075 AMOTQ4VCS5 1084 aa26.73■■□□□ 1.87
TRIM54-202ENST00000380075 FAM182BQ5T319 152 aa26.73■■□□□ 1.87
TRIM54-202ENST00000380075 KRT27Q7Z3Y8 459 aa26.73■■□□□ 1.87
TRIM54-202ENST00000380075 PLEKHM2Q8IWE5 1019 aa26.73■■□□□ 1.87
TRIM54-202ENST00000380075 DDX54Q8TDD1 881 aaKnown RBP26.73■■□□□ 1.87
TRIM54-202ENST00000380075 PARP4Q9UKK3 1724 aaKnown RBP26.73■■□□□ 1.87
TRIM54-202ENST00000380075 SLC4A10Q6U841 1118 aa26.72■■□□□ 1.87
TRIM54-202ENST00000380075 N4BP2Q86UW6 1770 aaPredicted RBP26.71■■□□□ 1.87
TRIM54-202ENST00000380075 TNS2Q63HR2 1409 aa26.71■■□□□ 1.87
TRIM54-202ENST00000380075 CDC45O75419 566 aa26.71■■□□□ 1.87
TRIM54-202ENST00000380075 GNAI3P08754 354 aa26.71■■□□□ 1.87
TRIM54-202ENST00000380075 PLEKHO1Q53GL0 409 aaPredicted RBP26.71■■□□□ 1.87
TRIM54-202ENST00000380075 AKAP4Q5JQC9 854 aa26.71■■□□□ 1.87
TRIM54-202ENST00000380075 ILDR2Q71H61 639 aa26.71■■□□□ 1.87
TRIM54-202ENST00000380075 MARCH10Q8NA82 808 aaPredicted RBP26.71■■□□□ 1.87
TRIM54-202ENST00000380075 SPG7Q9UQ90 795 aa26.71■■□□□ 1.87
TRIM54-202ENST00000380075 GNAI2P04899 355 aa26.7■■□□□ 1.86
TRIM54-202ENST00000380075 FKBP5Q13451 457 aaPredicted RBP26.7■■□□□ 1.86
TRIM54-202ENST00000380075 ANTXR1Q9H6X2 564 aa26.7■■□□□ 1.86
TRIM54-202ENST00000380075 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.7■■□□□ 1.86
TRIM54-202ENST00000380075 F6X3S4 739 aa26.69■■□□□ 1.86
TRIM54-202ENST00000380075 EP400Q96L91 3159 aa26.69■■□□□ 1.86
TRIM54-202ENST00000380075 TBC1D9Q6ZT07 1266 aa26.69■■□□□ 1.86
TRIM54-202ENST00000380075 CYP27B1O15528 508 aa26.68■■□□□ 1.86
TRIM54-202ENST00000380075 TTC22Q5TAA0 569 aa26.68■■□□□ 1.86
TRIM54-202ENST00000380075 KDM3BQ7LBC6 1761 aa26.67■■□□□ 1.86
TRIM54-202ENST00000380075 BRWD3Q6RI45 1802 aa26.67■■□□□ 1.86
TRIM54-202ENST00000380075 SNX21Q969T3 373 aa26.67■■□□□ 1.86
TRIM54-202ENST00000380075 PCDH11XQ9BZA7 1347 aa26.66■■□□□ 1.86
TRIM54-202ENST00000380075 PCDH11YQ9BZA8 1340 aa26.66■■□□□ 1.86
TRIM54-202ENST00000380075 HDGFL1Q5TGJ6 251 aa26.66■■□□□ 1.86
TRIM54-202ENST00000380075 HSCBQ8IWL3 235 aa26.66■■□□□ 1.86
TRIM54-202ENST00000380075 PLEKHG2Q9H7P9 1386 aa26.66■■□□□ 1.86
TRIM54-202ENST00000380075 GSPT1P15170 499 aaKnown RBP26.65■■□□□ 1.86
TRIM54-202ENST00000380075 ZNF530Q6P9A1 599 aaPredicted RBP26.65■■□□□ 1.86
TRIM54-202ENST00000380075 EIF4A1P60842 406 aaKnown RBP26.64■■□□□ 1.86
TRIM54-202ENST00000380075 SLKQ9H2G2 1235 aaPredicted RBP26.64■■□□□ 1.85
TRIM54-202ENST00000380075 PKD1L3Q7Z443 1732 aa26.63■■□□□ 1.85
TRIM54-202ENST00000380075 TEFQ10587 303 aa26.63■■□□□ 1.85
TRIM54-202ENST00000380075 PHKG2P15735 406 aa26.62■■□□□ 1.85
TRIM54-202ENST00000380075 FRAT2O75474 233 aaPredicted RBP26.62■■□□□ 1.85
TRIM54-202ENST00000380075 C1orf141Q5JVX7 400 aa26.62■■□□□ 1.85
TRIM54-202ENST00000380075 IFNL2Q8IZJ0 200 aa26.62■■□□□ 1.85
TRIM54-202ENST00000380075 SHANK3Q9BYB0 1731 aa26.62■■□□□ 1.85
TRIM54-202ENST00000380075 LGR6Q9HBX8 967 aa26.61■■□□□ 1.85
TRIM54-202ENST00000380075 OSBPL3Q9H4L5 887 aa26.6■■□□□ 1.85
TRIM54-202ENST00000380075 ATP8B2P98198 1209 aa26.59■■□□□ 1.85
TRIM54-202ENST00000380075 NECTIN2Q92692 538 aa26.59■■□□□ 1.85
TRIM54-202ENST00000380075 CASC1Q6TDU7 716 aa26.58■■□□□ 1.85
TRIM54-202ENST00000380075 C16orf71Q8IYS4 520 aaPredicted RBP26.58■■□□□ 1.85
TRIM54-202ENST00000380075 RNMTO43148 476 aaKnown RBP26.58■■□□□ 1.85
TRIM54-202ENST00000380075 FAM196AQ6ZSG2 479 aa26.58■■□□□ 1.85
TRIM54-202ENST00000380075 BTBD11A6QL63 1104 aa26.57■■□□□ 1.84
TRIM54-202ENST00000380075 NKX1-1Q15270 411 aaPredicted RBP26.57■■□□□ 1.84
TRIM54-202ENST00000380075 GSE1Q14687 1217 aa26.56■■□□□ 1.84
TRIM54-202ENST00000380075 CHMP5Q9NZZ3 219 aa26.56■■□□□ 1.84
TRIM54-202ENST00000380075 MPRIPQ6WCQ1 1025 aa26.55■■□□□ 1.84
TRIM54-202ENST00000380075 SMARCA5O60264 1052 aaPredicted RBP26.55■■□□□ 1.84
TRIM54-202ENST00000380075 ACSBG1Q96GR2 724 aa26.55■■□□□ 1.84
TRIM54-202ENST00000380075 KIF2CQ99661 725 aa26.55■■□□□ 1.84
TRIM54-202ENST00000380075 UBTFL1P0CB47 393 aaPredicted RBP26.54■■□□□ 1.84
TRIM54-202ENST00000380075 ADAMTS7Q9UKP4 1686 aa26.54■■□□□ 1.84
TRIM54-202ENST00000380075 OTUD7AQ8TE49 926 aaPredicted RBP26.53■■□□□ 1.84
TRIM54-202ENST00000380075 LRRCC1Q9C099 1032 aa26.53■■□□□ 1.84
TRIM54-202ENST00000380075 SRCIN1Q9C0H9 1055 aa26.53■■□□□ 1.84
TRIM54-202ENST00000380075 USP44Q9H0E7 712 aa26.53■■□□□ 1.84
TRIM54-202ENST00000380075 SDSP20132 328 aa26.53■■□□□ 1.84
TRIM54-202ENST00000380075 PHAXQ9H814 394 aaKnown RBP26.53■■□□□ 1.84
TRIM54-202ENST00000380075 BCL9O00512 1426 aa26.52■■□□□ 1.84
TRIM54-202ENST00000380075 DCAF5Q96JK2 942 aa26.52■■□□□ 1.84
TRIM54-202ENST00000380075 IBTKQ9P2D0 1353 aaPredicted RBP26.52■■□□□ 1.84
TRIM54-202ENST00000380075 KCNQ2O43526 872 aa26.51■■□□□ 1.83
TRIM54-202ENST00000380075 HSP90AB1P08238 724 aaKnown RBP26.51■■□□□ 1.83
TRIM54-202ENST00000380075 PTF1AQ7RTS3 328 aa26.51■■□□□ 1.83
TRIM54-202ENST00000380075 APBB1O00213 710 aa26.51■■□□□ 1.83
TRIM54-202ENST00000380075 EIF2S2P20042 333 aaKnown RBP26.51■■□□□ 1.83
TRIM54-202ENST00000380075 PDE1AP54750 535 aa26.51■■□□□ 1.83
TRIM54-202ENST00000380075 LRRFIP2Q9Y608 721 aaKnown RBP26.51■■□□□ 1.83
TRIM54-202ENST00000380075 HEG1Q9ULI3 1381 aa26.51■■□□□ 1.83
TRIM54-202ENST00000380075 KDM6AO15550 1401 aaPredicted RBP26.5■■□□□ 1.83
TRIM54-202ENST00000380075 CHPF2Q9P2E5 772 aa26.5■■□□□ 1.83
TRIM54-202ENST00000380075 DBF4Q9UBU7 674 aaPredicted RBP26.5■■□□□ 1.83
TRIM54-202ENST00000380075 TRIM37O94972 964 aa26.49■■□□□ 1.83
TRIM54-202ENST00000380075 PRIM1P49642 420 aaKnown RBP26.49■■□□□ 1.83
TRIM54-202ENST00000380075 DNAAF4Q8WXU2 420 aa26.49■■□□□ 1.83
TRIM54-202ENST00000380075 SALL3Q9BXA9 1300 aa26.49■■□□□ 1.83
TRIM54-202ENST00000380075 SYTL4Q96C24 671 aaPredicted RBP26.49■■□□□ 1.83
TRIM54-202ENST00000380075 PNMA6EA0A0J9YXQ4 647 aa26.48■■□□□ 1.83
TRIM54-202ENST00000380075 SSH3Q8TE77 659 aa26.48■■□□□ 1.83
TRIM54-202ENST00000380075 CIZ1Q9ULV3 898 aaPredicted RBP26.48■■□□□ 1.83
TRIM54-202ENST00000380075 EXOC6BQ9Y2D4 811 aa26.48■■□□□ 1.83
TRIM54-202ENST00000380075 SIPA1L3O60292 1781 aaPredicted RBP26.48■■□□□ 1.83
TRIM54-202ENST00000380075 KCNQ3O43525 872 aa26.47■■□□□ 1.83
TRIM54-202ENST00000380075 REC8O95072 547 aa26.47■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms