RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 EIF2S2P20042 333 aaKnown RBP30.77■■■□□ 2.52
C9orf40-201ENST00000376854 FOXD4L5Q5VV16 416 aaPredicted RBP30.77■■■□□ 2.52
C9orf40-201ENST00000376854 FOXD4L4Q8WXT5 416 aaPredicted RBP30.77■■■□□ 2.52
C9orf40-201ENST00000376854 CHAMP1Q96JM3 812 aa30.77■■■□□ 2.52
C9orf40-201ENST00000376854 SURF6O75683 361 aaKnown RBP30.76■■■□□ 2.52
C9orf40-201ENST00000376854 CEMIPQ8WUJ3 1361 aa30.76■■■□□ 2.52
C9orf40-201ENST00000376854 ADGRL3Q9HAR2 1447 aa30.76■■■□□ 2.51
C9orf40-201ENST00000376854 POLA2Q14181 598 aa30.76■■■□□ 2.51
C9orf40-201ENST00000376854 NOL8Q76FK4 1167 aaKnown RBP30.75■■■□□ 2.51
C9orf40-201ENST00000376854 IL17RAQ96F46 866 aa30.75■■■□□ 2.51
C9orf40-201ENST00000376854 XPCQ01831 940 aaPredicted RBP30.75■■■□□ 2.51
C9orf40-201ENST00000376854 INTS4Q96HW7 963 aaKnown RBP30.74■■■□□ 2.51
C9orf40-201ENST00000376854 LGR6Q9HBX8 967 aa30.74■■■□□ 2.51
C9orf40-201ENST00000376854 RBM27Q9P2N5 1060 aaKnown RBP30.74■■■□□ 2.51
C9orf40-201ENST00000376854 BRD1O95696 1058 aa30.74■■■□□ 2.51
C9orf40-201ENST00000376854 EIF4A1P60842 406 aaKnown RBP30.74■■■□□ 2.51
C9orf40-201ENST00000376854 LRRC59Q96AG4 307 aaKnown RBP30.74■■■□□ 2.51
C9orf40-201ENST00000376854 ZNF142P52746 1687 aaPredicted RBP30.73■■■□□ 2.51
C9orf40-201ENST00000376854 RHPN1Q8TCX5 695 aa30.73■■■□□ 2.51
C9orf40-201ENST00000376854 IL25Q9H293 177 aa30.73■■■□□ 2.51
C9orf40-201ENST00000376854 ORAI2Q96SN7 254 aa30.72■■■□□ 2.51
C9orf40-201ENST00000376854 UPF3BQ9BZI7 483 aaKnown RBP30.72■■■□□ 2.51
C9orf40-201ENST00000376854 SRGAP3O43295 1099 aa30.72■■■□□ 2.51
C9orf40-201ENST00000376854 EPB41L2O43491 1005 aaKnown RBP30.72■■■□□ 2.51
C9orf40-201ENST00000376854 RBSNQ9H1K0 784 aa30.71■■■□□ 2.51
C9orf40-201ENST00000376854 CHPF2Q9P2E5 772 aa30.71■■■□□ 2.51
C9orf40-201ENST00000376854 NBPF7P0C2Y1 421 aaPredicted RBP30.7■■■□□ 2.51
C9orf40-201ENST00000376854 PRIM1P49642 420 aaKnown RBP30.7■■■□□ 2.51
C9orf40-201ENST00000376854 MAP4K4O95819 1239 aaPredicted RBP30.7■■■□□ 2.5
C9orf40-201ENST00000376854 HOXB7P09629 217 aa30.7■■■□□ 2.5
C9orf40-201ENST00000376854 PI4K2BQ8TCG2 481 aa30.7■■■□□ 2.5
C9orf40-201ENST00000376854 HSPA4P34932 840 aa30.69■■■□□ 2.5
C9orf40-201ENST00000376854 KIF1BPQ96EK5 621 aa30.69■■■□□ 2.5
C9orf40-201ENST00000376854 RGPD2P0DJD1 1756 aa30.69■■■□□ 2.5
C9orf40-201ENST00000376854 BEND3Q5T5X7 828 aa30.69■■■□□ 2.5
C9orf40-201ENST00000376854 DNAAF4Q8WXU2 420 aa30.69■■■□□ 2.5
C9orf40-201ENST00000376854 TMEM63CQ9P1W3 806 aa30.68■■■□□ 2.5
C9orf40-201ENST00000376854 PI4KAP2A4QPH2 592 aa30.68■■■□□ 2.5
C9orf40-201ENST00000376854 PI4KAP1Q8N8J0 262 aa30.68■■■□□ 2.5
C9orf40-201ENST00000376854 CHMP4AQ9BY43 222 aa30.68■■■□□ 2.5
C9orf40-201ENST00000376854 KCNQ3O43525 872 aa30.67■■■□□ 2.5
C9orf40-201ENST00000376854 NSFL1CQ9UNZ2 370 aaKnown RBP30.67■■■□□ 2.5
C9orf40-201ENST00000376854 MED1Q15648 1581 aaPredicted RBP30.67■■■□□ 2.5
C9orf40-201ENST00000376854 MBD3O95983 291 aa30.67■■■□□ 2.5
C9orf40-201ENST00000376854 KCNH5Q8NCM2 988 aa30.67■■■□□ 2.5
C9orf40-201ENST00000376854 LRSAM1Q6UWE0 723 aa30.64■■■□□ 2.5
C9orf40-201ENST00000376854 NPHP4O75161 1426 aaPredicted RBP30.64■■■□□ 2.5
C9orf40-201ENST00000376854 SGSM2O43147 1006 aa30.64■■■□□ 2.5
C9orf40-201ENST00000376854 TEFQ10587 303 aa30.64■■■□□ 2.5
C9orf40-201ENST00000376854 ZSCAN30Q86W11 494 aa30.64■■■□□ 2.5
C9orf40-201ENST00000376854 CNTROBQ8N137 903 aa30.63■■■□□ 2.49
C9orf40-201ENST00000376854 SYCE3A1L190 88 aa30.63■■■□□ 2.49
C9orf40-201ENST00000376854 BTBD11A6QL63 1104 aa30.63■■■□□ 2.49
C9orf40-201ENST00000376854 LMOD2Q6P5Q4 547 aa30.63■■■□□ 2.49
C9orf40-201ENST00000376854 RAD50Q92878 1312 aa30.63■■■□□ 2.49
C9orf40-201ENST00000376854 GCP02774 474 aa30.62■■■□□ 2.49
C9orf40-201ENST00000376854 HSP90AB4PQ58FF6 505 aa30.62■■■□□ 2.49
C9orf40-201ENST00000376854 ZNF530Q6P9A1 599 aaPredicted RBP30.62■■■□□ 2.49
C9orf40-201ENST00000376854 MPRIPQ6WCQ1 1025 aa30.62■■■□□ 2.49
C9orf40-201ENST00000376854 ANXA1P04083 346 aa30.62■■■□□ 2.49
C9orf40-201ENST00000376854 AKAP4Q5JQC9 854 aa30.62■■■□□ 2.49
C9orf40-201ENST00000376854 ADAMTSL3P82987 1691 aa30.61■■■□□ 2.49
C9orf40-201ENST00000376854 ADCY9O60503 1353 aa30.6■■■□□ 2.49
C9orf40-201ENST00000376854 ARHGEF25Q86VW2 580 aa30.59■■■□□ 2.49
C9orf40-201ENST00000376854 KDM3BQ7LBC6 1761 aa30.59■■■□□ 2.49
C9orf40-201ENST00000376854 PLEKHO1Q53GL0 409 aaPredicted RBP30.58■■■□□ 2.49
C9orf40-201ENST00000376854 LSG1Q9H089 658 aaKnown RBP30.58■■■□□ 2.49
C9orf40-201ENST00000376854 SNX14Q9Y5W7 946 aa30.58■■■□□ 2.49
C9orf40-201ENST00000376854 PXDNQ92626 1479 aa30.58■■■□□ 2.49
C9orf40-201ENST00000376854 OS9Q13438 667 aaPredicted RBP30.58■■■□□ 2.49
C9orf40-201ENST00000376854 PDLIM2Q96JY6 352 aa30.57■■■□□ 2.48
C9orf40-201ENST00000376854 WDR33Q9C0J8 1336 aaKnown RBP30.57■■■□□ 2.48
C9orf40-201ENST00000376854 PHRF1Q9P1Y6 1649 aaKnown RBP30.57■■■□□ 2.48
C9orf40-201ENST00000376854 KIAA1211Q6ZU35 1233 aa30.56■■■□□ 2.48
C9orf40-201ENST00000376854 DBF4Q9UBU7 674 aaPredicted RBP30.56■■■□□ 2.48
C9orf40-201ENST00000376854 USP42Q9H9J4 1324 aaKnown RBP30.56■■■□□ 2.48
C9orf40-201ENST00000376854 MSNP26038 577 aaKnown RBP30.56■■■□□ 2.48
C9orf40-201ENST00000376854 HS1BP3Q53T59 392 aa30.56■■■□□ 2.48
C9orf40-201ENST00000376854 CWC27Q6UX04 472 aaKnown RBP30.56■■■□□ 2.48
C9orf40-201ENST00000376854 TTC41PQ6P2S7 1318 aa30.55■■■□□ 2.48
C9orf40-201ENST00000376854 FOXD4L6Q3SYB3 417 aaPredicted RBP30.55■■■□□ 2.48
C9orf40-201ENST00000376854 FOXD4L3Q6VB84 417 aaPredicted RBP30.55■■■□□ 2.48
C9orf40-201ENST00000376854 ANKRD24Q8TF21 1146 aa30.55■■■□□ 2.48
C9orf40-201ENST00000376854 AXIN2Q9Y2T1 843 aa30.55■■■□□ 2.48
C9orf40-201ENST00000376854 GLRX3O76003 335 aaKnown RBP30.54■■■□□ 2.48
C9orf40-201ENST00000376854 MTX1Q13505 466 aa30.54■■■□□ 2.48
C9orf40-201ENST00000376854 LMO7Q8WWI1 1683 aa30.54■■■□□ 2.48
C9orf40-201ENST00000376854 TTC14Q96N46 770 aa30.53■■■□□ 2.48
C9orf40-201ENST00000376854 SLIT3O75094 1523 aa30.53■■■□□ 2.48
C9orf40-201ENST00000376854 RNMTO43148 476 aaKnown RBP30.53■■■□□ 2.48
C9orf40-201ENST00000376854 AMOTQ4VCS5 1084 aa30.53■■■□□ 2.48
C9orf40-201ENST00000376854 RASEFQ8IZ41 740 aa30.53■■■□□ 2.48
C9orf40-201ENST00000376854 CLASRPQ8N2M8 674 aaKnown RBP30.52■■■□□ 2.48
C9orf40-201ENST00000376854 MAP3K2Q9Y2U5 619 aa30.52■■■□□ 2.48
C9orf40-201ENST00000376854 C1orf141Q5JVX7 400 aa30.52■■■□□ 2.48
C9orf40-201ENST00000376854 SYAP1Q96A49 352 aaPredicted RBP30.52■■■□□ 2.48
C9orf40-201ENST00000376854 C9orf78Q9NZ63 289 aaPredicted RBP30.52■■■□□ 2.48
C9orf40-201ENST00000376854 SPG7Q9UQ90 795 aa30.52■■■□□ 2.48
C9orf40-201ENST00000376854 AK2P54819 239 aa30.51■■■□□ 2.48
C9orf40-201ENST00000376854 GDPD2Q9HCC8 539 aa30.51■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms