RNA–Protein interactions for RNA: ENST00000375274.6

PTCH1-203, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 4,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-203ENST00000375274 CDK5RAP3Q96JB5 506 aa13.5□□□□□ -0.25
PTCH1-203ENST00000375274 MPHOSPH8Q99549 860 aa13.5□□□□□ -0.25
PTCH1-203ENST00000375274 GIMAP6Q6P9H5 292 aa13.5□□□□□ -0.25
PTCH1-203ENST00000375274 C16orf71Q8IYS4 520 aaPredicted RBP13.5□□□□□ -0.25
PTCH1-203ENST00000375274 GNL3LQ9NVN8 582 aaKnown RBP13.5□□□□□ -0.25
PTCH1-203ENST00000375274 ZKSCAN5Q9Y2L8 839 aa13.5□□□□□ -0.25
PTCH1-203ENST00000375274 CD109Q6YHK3 1445 aa13.5□□□□□ -0.25
PTCH1-203ENST00000375274 KIF21AQ7Z4S6 1674 aa13.49□□□□□ -0.25
PTCH1-203ENST00000375274 NEMFO60524 1076 aa13.49□□□□□ -0.25
PTCH1-203ENST00000375274 SKIDA1Q1XH10 827 aa13.49□□□□□ -0.25
PTCH1-203ENST00000375274 CCDC85AQ96PX6 553 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-203ENST00000375274 UBAC1Q9BSL1 405 aa13.49□□□□□ -0.25
PTCH1-203ENST00000375274 TTC21BQ7Z4L5 1316 aa13.49□□□□□ -0.25
PTCH1-203ENST00000375274 ZNF608Q9ULD9 1512 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-203ENST00000375274 ZSCAN22P10073 491 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-203ENST00000375274 TDO2P48775 406 aa13.49□□□□□ -0.25
PTCH1-203ENST00000375274 PRIM1P49642 420 aaKnown RBP13.49□□□□□ -0.25
PTCH1-203ENST00000375274 ESYT1Q9BSJ8 1104 aa13.49□□□□□ -0.25
PTCH1-203ENST00000375274 TRMT1Q9NXH9 659 aaKnown RBP13.49□□□□□ -0.25
PTCH1-203ENST00000375274 ERICH4A6NGS2 130 aa13.49□□□□□ -0.25
PTCH1-203ENST00000375274 RHPN1Q8TCX5 695 aa13.49□□□□□ -0.25
PTCH1-203ENST00000375274 CCDC43Q96MW1 224 aaKnown RBP13.49□□□□□ -0.25
PTCH1-203ENST00000375274 PI4KAP2A4QPH2 592 aa13.49□□□□□ -0.25
PTCH1-203ENST00000375274 URI1O94763 535 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-203ENST00000375274 ZC3H6P61129 1189 aaKnown RBP13.49□□□□□ -0.25
PTCH1-203ENST00000375274 TOM1L2Q6ZVM7 507 aa13.49□□□□□ -0.25
PTCH1-203ENST00000375274 PI4KAP1Q8N8J0 262 aa13.49□□□□□ -0.25
PTCH1-203ENST00000375274 WASF1Q92558 559 aa13.49□□□□□ -0.25
PTCH1-203ENST00000375274 DCTPP1Q9H773 170 aa13.49□□□□□ -0.25
PTCH1-203ENST00000375274 STRN4Q9NRL3 753 aa13.49□□□□□ -0.25
PTCH1-203ENST00000375274 EPB41L2O43491 1005 aaKnown RBP13.48□□□□□ -0.25
PTCH1-203ENST00000375274 VAMP4O75379 141 aa13.48□□□□□ -0.25
PTCH1-203ENST00000375274 IFIT1P09914 478 aaKnown RBP13.48□□□□□ -0.25
PTCH1-203ENST00000375274 CT47A1Q5JQC4 288 aaPredicted RBP13.48□□□□□ -0.25
PTCH1-203ENST00000375274 ZSCAN12O43309 604 aa13.48□□□□□ -0.25
PTCH1-203ENST00000375274 CCAR1Q8IX12 1150 aaKnown RBP13.48□□□□□ -0.25
PTCH1-203ENST00000375274 FSIP1Q8NA03 581 aa13.48□□□□□ -0.25
PTCH1-203ENST00000375274 DEF6Q9H4E7 631 aa13.48□□□□□ -0.25
PTCH1-203ENST00000375274 CAVIN2O95810 425 aa13.48□□□□□ -0.25
PTCH1-203ENST00000375274 MPRIPQ6WCQ1 1025 aa13.48□□□□□ -0.25
PTCH1-203ENST00000375274 MYD88Q99836 296 aa13.48□□□□□ -0.25
PTCH1-203ENST00000375274 ARHGEF12Q9NZN5 1544 aa13.48□□□□□ -0.25
PTCH1-203ENST00000375274 AMOTQ4VCS5 1084 aa13.48□□□□□ -0.25
PTCH1-203ENST00000375274 WDR62O43379 1518 aa13.48□□□□□ -0.25
PTCH1-203ENST00000375274 TSPYL1Q9H0U9 437 aa13.47□□□□□ -0.25
PTCH1-203ENST00000375274 ATP10BO94823 1461 aa13.47□□□□□ -0.25
PTCH1-203ENST00000375274 TOP1P11387 765 aaKnown RBP13.47□□□□□ -0.25
PTCH1-203ENST00000375274 USP48Q86UV5 1035 aa13.47□□□□□ -0.25
PTCH1-203ENST00000375274 AIDAQ96BJ3 306 aa13.47□□□□□ -0.25
PTCH1-203ENST00000375274 ZNF830Q96NB3 372 aaPredicted RBP13.47□□□□□ -0.25
PTCH1-203ENST00000375274 LUC7LQ9NQ29 371 aaKnown RBP13.47□□□□□ -0.25
PTCH1-203ENST00000375274 CGNQ9P2M7 1197 aaKnown RBP13.47□□□□□ -0.25
PTCH1-203ENST00000375274 CCT2P78371 535 aaKnown RBP13.47□□□□□ -0.25
PTCH1-203ENST00000375274 NOLC1Q14978 699 aaKnown RBP eCLIP13.47□□□□□ -0.25
PTCH1-203ENST00000375274 TSPYL6Q8N831 410 aa13.47□□□□□ -0.25
PTCH1-203ENST00000375274 UBE2Q2Q8WVN8 375 aa13.46□□□□□ -0.25
PTCH1-203ENST00000375274 HYPKQ9NX55 129 aa13.46□□□□□ -0.25
PTCH1-203ENST00000375274 PIK3R4Q99570 1358 aa13.46□□□□□ -0.25
PTCH1-203ENST00000375274 GSDMDP57764 484 aa13.46□□□□□ -0.25
PTCH1-203ENST00000375274 CCDC181Q5TID7 509 aa13.46□□□□□ -0.25
PTCH1-203ENST00000375274 PPP4R3BQ5MIZ7 849 aa13.46□□□□□ -0.26
PTCH1-203ENST00000375274 ZGPATQ8N5A5 531 aaKnown RBP13.46□□□□□ -0.26
PTCH1-203ENST00000375274 CCDC102AQ96A19 550 aa13.46□□□□□ -0.26
PTCH1-203ENST00000375274 CNPY2Q9Y2B0 182 aa13.46□□□□□ -0.26
PTCH1-203ENST00000375274 AKAP2Q9Y2D5 859 aa13.46□□□□□ -0.26
PTCH1-203ENST00000375274 HS1BP3Q53T59 392 aa13.45□□□□□ -0.26
PTCH1-203ENST00000375274 HSP90AB2PQ58FF8 381 aa13.45□□□□□ -0.26
PTCH1-203ENST00000375274 CFAP43Q8NDM7 1665 aa13.45□□□□□ -0.26
PTCH1-203ENST00000375274 STX1AQ16623 288 aa13.45□□□□□ -0.26
PTCH1-203ENST00000375274 PLEKHM2Q8IWE5 1019 aa13.45□□□□□ -0.26
PTCH1-203ENST00000375274 PRDM11Q9NQV5 511 aa13.45□□□□□ -0.26
PTCH1-203ENST00000375274 POLKQ9UBT6 870 aa13.45□□□□□ -0.26
PTCH1-203ENST00000375274 KDM5BQ9UGL1 1544 aa13.45□□□□□ -0.26
PTCH1-203ENST00000375274 NECAB1Q8N987 351 aa13.45□□□□□ -0.26
PTCH1-203ENST00000375274 FANCAO15360 1455 aa13.45□□□□□ -0.26
PTCH1-203ENST00000375274 PZPP20742 1482 aa13.45□□□□□ -0.26
PTCH1-203ENST00000375274 COL17A1Q9UMD9 1497 aaPredicted RBP13.45□□□□□ -0.26
PTCH1-203ENST00000375274 RAPGEF6Q8TEU7 1601 aa13.45□□□□□ -0.26
PTCH1-203ENST00000375274 METTL24Q5JXM2 366 aa13.45□□□□□ -0.26
PTCH1-203ENST00000375274 NEK1Q96PY6 1258 aa13.45□□□□□ -0.26
PTCH1-203ENST00000375274 MYO6Q9UM54 1294 aa13.45□□□□□ -0.26
PTCH1-203ENST00000375274 CEP131Q9UPN4 1083 aa13.45□□□□□ -0.26
PTCH1-203ENST00000375274 CTDP1Q9Y5B0 961 aaPredicted RBP13.45□□□□□ -0.26
PTCH1-203ENST00000375274 RBM25P49756 843 aaKnown RBP13.44□□□□□ -0.26
PTCH1-203ENST00000375274 ANKLE2Q86XL3 938 aa13.44□□□□□ -0.26
PTCH1-203ENST00000375274 FAM200AQ8TCP9 573 aa13.44□□□□□ -0.26
PTCH1-203ENST00000375274 PUS7Q96PZ0 661 aaKnown RBP13.44□□□□□ -0.26
PTCH1-203ENST00000375274 TTC12Q9H892 705 aaPredicted RBP13.44□□□□□ -0.26
PTCH1-203ENST00000375274 HMG20BQ9P0W2 317 aa13.44□□□□□ -0.26
PTCH1-203ENST00000375274 A0A087WZG4 1122 aa13.44□□□□□ -0.26
PTCH1-203ENST00000375274 PTCD1O75127 700 aaKnown RBP13.44□□□□□ -0.26
PTCH1-203ENST00000375274 TAF3Q5VWG9 929 aa13.44□□□□□ -0.26
PTCH1-203ENST00000375274 UHRF1BP1Q6BDS2 1440 aa13.44□□□□□ -0.26
PTCH1-203ENST00000375274 KLHL10Q6JEL2 608 aa13.44□□□□□ -0.26
PTCH1-203ENST00000375274 SAMD1Q6SPF0 538 aaPredicted RBP13.44□□□□□ -0.26
PTCH1-203ENST00000375274 ZMYND15Q9H091 742 aa13.44□□□□□ -0.26
PTCH1-203ENST00000375274 LRP2BPQ9P2M1 347 aa13.44□□□□□ -0.26
PTCH1-203ENST00000375274 MAP3K2Q9Y2U5 619 aa13.44□□□□□ -0.26
PTCH1-203ENST00000375274 BIN1O00499 593 aa13.44□□□□□ -0.26
PTCH1-203ENST00000375274 ANXA1P04083 346 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 103.4 ms