RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 ZKSCAN5Q9Y2L8 839 aa13.52□□□□□ -0.25
CCDC40-203ENST00000374877 ZNF500O60304 480 aaPredicted RBP13.51□□□□□ -0.25
CCDC40-203ENST00000374877 AEBP2Q6ZN18 517 aaPredicted RBP13.51□□□□□ -0.25
CCDC40-203ENST00000374877 SULT6B1Q6IMI4 303 aa13.51□□□□□ -0.25
CCDC40-203ENST00000374877 ARID3AQ99856 593 aa13.51□□□□□ -0.25
CCDC40-203ENST00000374877 ATP10DQ9P241 1426 aa13.51□□□□□ -0.25
CCDC40-203ENST00000374877 TERF1P54274 439 aa13.5□□□□□ -0.25
CCDC40-203ENST00000374877 FOXD4L6Q3SYB3 417 aaPredicted RBP13.5□□□□□ -0.25
CCDC40-203ENST00000374877 FOXD4L3Q6VB84 417 aaPredicted RBP13.5□□□□□ -0.25
CCDC40-203ENST00000374877 EYA1Q99502 592 aa13.5□□□□□ -0.25
CCDC40-203ENST00000374877 ROBO1Q9Y6N7 1651 aa13.5□□□□□ -0.25
CCDC40-203ENST00000374877 PTMAP06454 111 aaKnown RBP13.5□□□□□ -0.25
CCDC40-203ENST00000374877 NCAPD2Q15021 1401 aa13.5□□□□□ -0.25
CCDC40-203ENST00000374877 ZBTB7CA1YPR0 619 aa13.5□□□□□ -0.25
CCDC40-203ENST00000374877 TMX3Q96JJ7 454 aa13.49□□□□□ -0.25
CCDC40-203ENST00000374877 CCDC39Q9UFE4 941 aa13.49□□□□□ -0.25
CCDC40-203ENST00000374877 MBD3O95983 291 aa13.48□□□□□ -0.25
CCDC40-203ENST00000374877 TSHZ3Q63HK5 1081 aa13.48□□□□□ -0.25
CCDC40-203ENST00000374877 SLC4A10Q6U841 1118 aa13.48□□□□□ -0.25
CCDC40-203ENST00000374877 AEBP1Q8IUX7 1158 aa13.48□□□□□ -0.25
CCDC40-203ENST00000374877 CAMTA1Q9Y6Y1 1673 aa13.48□□□□□ -0.25
CCDC40-203ENST00000374877 CSPP1Q1MSJ5 1256 aa13.48□□□□□ -0.25
CCDC40-203ENST00000374877 MCM10Q7L590 875 aa13.47□□□□□ -0.25
CCDC40-203ENST00000374877 COL18A1P39060 1754 aa13.47□□□□□ -0.25
CCDC40-203ENST00000374877 HMMRO75330 724 aa13.47□□□□□ -0.25
CCDC40-203ENST00000374877 HAP1P54257 671 aaPredicted RBP13.47□□□□□ -0.25
CCDC40-203ENST00000374877 TOM1O60784 492 aa13.47□□□□□ -0.25
CCDC40-203ENST00000374877 ABCA3Q99758 1704 aa13.46□□□□□ -0.25
CCDC40-203ENST00000374877 PDE1AP54750 535 aa13.46□□□□□ -0.25
CCDC40-203ENST00000374877 LRRC59Q96AG4 307 aaKnown RBP13.46□□□□□ -0.25
CCDC40-203ENST00000374877 PLEKHG2Q9H7P9 1386 aa13.46□□□□□ -0.26
CCDC40-203ENST00000374877 SLC4A2P04920 1241 aa13.46□□□□□ -0.26
CCDC40-203ENST00000374877 MCM5P33992 734 aa13.46□□□□□ -0.26
CCDC40-203ENST00000374877 TPRNQ4KMQ1 711 aa13.46□□□□□ -0.26
CCDC40-203ENST00000374877 MPNDQ8N594 471 aa13.46□□□□□ -0.26
CCDC40-203ENST00000374877 MAP7D2Q96T17 732 aa13.46□□□□□ -0.26
CCDC40-203ENST00000374877 TSPY26PQ9H489 355 aa13.46□□□□□ -0.26
CCDC40-203ENST00000374877 EXOC6BQ9Y2D4 811 aa13.46□□□□□ -0.26
CCDC40-203ENST00000374877 LMO7Q8WWI1 1683 aa13.46□□□□□ -0.26
CCDC40-203ENST00000374877 COL22A1Q8NFW1 1626 aaPredicted RBP13.45□□□□□ -0.26
CCDC40-203ENST00000374877 ANKRD24Q8TF21 1146 aa13.45□□□□□ -0.26
CCDC40-203ENST00000374877 GDPD2Q9HCC8 539 aa13.45□□□□□ -0.26
CCDC40-203ENST00000374877 RGS12O14924 1447 aa13.45□□□□□ -0.26
CCDC40-203ENST00000374877 ANO2Q9NQ90 1003 aa13.45□□□□□ -0.26
CCDC40-203ENST00000374877 F6X3S4 739 aa13.44□□□□□ -0.26
CCDC40-203ENST00000374877 BRD1O95696 1058 aa13.44□□□□□ -0.26
CCDC40-203ENST00000374877 MCCP23508 829 aa13.44□□□□□ -0.26
CCDC40-203ENST00000374877 ZC3H6P61129 1189 aaKnown RBP13.44□□□□□ -0.26
CCDC40-203ENST00000374877 FAM208AQ9UK61 1670 aaKnown RBP13.44□□□□□ -0.26
CCDC40-203ENST00000374877 DLG5Q8TDM6 1919 aa13.44□□□□□ -0.26
CCDC40-203ENST00000374877 DNTTIP2Q5QJE6 756 aaKnown RBP13.44□□□□□ -0.26
CCDC40-203ENST00000374877 RILPL2Q969X0 211 aa13.44□□□□□ -0.26
CCDC40-203ENST00000374877 LTV1Q96GA3 475 aaPredicted RBP13.44□□□□□ -0.26
CCDC40-203ENST00000374877 PALD1Q9ULE6 856 aa13.44□□□□□ -0.26
CCDC40-203ENST00000374877 KIAA0232Q92628 1395 aa13.44□□□□□ -0.26
CCDC40-203ENST00000374877 PTPRCP08575 1304 aa13.44□□□□□ -0.26
CCDC40-203ENST00000374877 ERBB3P21860 1342 aa13.44□□□□□ -0.26
CCDC40-203ENST00000374877 TRIM6-TRIM34B2RNG4 842 aa13.44□□□□□ -0.26
CCDC40-203ENST00000374877 CABLES1Q8TDN4 633 aa13.44□□□□□ -0.26
CCDC40-203ENST00000374877 MIS18AQ9NYP9 233 aa13.44□□□□□ -0.26
CCDC40-203ENST00000374877 MCM2P49736 904 aa13.43□□□□□ -0.26
CCDC40-203ENST00000374877 SYAP1Q96A49 352 aaPredicted RBP13.43□□□□□ -0.26
CCDC40-203ENST00000374877 UPF3BQ9BZI7 483 aaKnown RBP13.43□□□□□ -0.26
CCDC40-203ENST00000374877 NBPF6Q5VWK0 638 aa13.43□□□□□ -0.26
CCDC40-203ENST00000374877 SASS6Q6UVJ0 657 aa13.43□□□□□ -0.26
CCDC40-203ENST00000374877 NBPF4Q96M43 638 aa13.43□□□□□ -0.26
CCDC40-203ENST00000374877 AXIN2Q9Y2T1 843 aa13.43□□□□□ -0.26
CCDC40-203ENST00000374877 CHL1O00533 1208 aa13.43□□□□□ -0.26
CCDC40-203ENST00000374877 ESYT1Q9BSJ8 1104 aa13.43□□□□□ -0.26
CCDC40-203ENST00000374877 HTATSF1O43719 755 aaKnown RBP13.42□□□□□ -0.26
CCDC40-203ENST00000374877 DYNC1I1O14576 645 aa13.42□□□□□ -0.26
CCDC40-203ENST00000374877 COL16A1Q07092 1604 aaPredicted RBP13.42□□□□□ -0.26
CCDC40-203ENST00000374877 KIAA2012Q0VF49 1180 aa13.42□□□□□ -0.26
CCDC40-203ENST00000374877 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.42□□□□□ -0.26
CCDC40-203ENST00000374877 G2E3Q7L622 706 aa13.41□□□□□ -0.26
CCDC40-203ENST00000374877 OSBPL3Q9H4L5 887 aa13.41□□□□□ -0.26
CCDC40-203ENST00000374877 GADD45BO75293 160 aaPredicted RBP13.41□□□□□ -0.26
CCDC40-203ENST00000374877 PLEKHG5O94827 1062 aa13.4□□□□□ -0.26
CCDC40-203ENST00000374877 CUL4AQ13619 759 aa13.4□□□□□ -0.26
CCDC40-203ENST00000374877 MTHFSDQ2M296 383 aaKnown RBP13.4□□□□□ -0.26
CCDC40-203ENST00000374877 PHLPP1O60346 1717 aa13.4□□□□□ -0.26
CCDC40-203ENST00000374877 PHF14O94880 888 aa13.4□□□□□ -0.26
CCDC40-203ENST00000374877 MX1P20591 662 aa13.4□□□□□ -0.26
CCDC40-203ENST00000374877 ZNF830Q96NB3 372 aaPredicted RBP13.4□□□□□ -0.26
CCDC40-203ENST00000374877 PRDM11Q9NQV5 511 aa13.4□□□□□ -0.26
CCDC40-203ENST00000374877 GNAI2P04899 355 aa13.39□□□□□ -0.27
CCDC40-203ENST00000374877 LRRCC1Q9C099 1032 aa13.39□□□□□ -0.27
CCDC40-203ENST00000374877 AMOTQ4VCS5 1084 aa13.39□□□□□ -0.27
CCDC40-203ENST00000374877 USP48Q86UV5 1035 aa13.39□□□□□ -0.27
CCDC40-203ENST00000374877 INTS4Q96HW7 963 aaKnown RBP13.39□□□□□ -0.27
CCDC40-203ENST00000374877 USP25Q9UHP3 1055 aa13.39□□□□□ -0.27
CCDC40-203ENST00000374877 CHMLP26374 656 aa13.38□□□□□ -0.27
CCDC40-203ENST00000374877 CCT4P50991 539 aaKnown RBP13.38□□□□□ -0.27
CCDC40-203ENST00000374877 RGPD5Q99666 1765 aa13.38□□□□□ -0.27
CCDC40-203ENST00000374877 MTERF4Q7Z6M4 381 aaKnown RBP13.38□□□□□ -0.27
CCDC40-203ENST00000374877 USHBP1Q8N6Y0 703 aa13.38□□□□□ -0.27
CCDC40-203ENST00000374877 TSPYL4Q9UJ04 414 aa13.38□□□□□ -0.27
CCDC40-203ENST00000374877 UBAP1LF5GYI3 381 aa13.38□□□□□ -0.27
CCDC40-203ENST00000374877 CHRNA2Q15822 529 aa13.38□□□□□ -0.27
CCDC40-203ENST00000374877 RGPD2P0DJD1 1756 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms