RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 NUCB1Q02818 461 aa17.32■□□□□ 0.36
PTPRF-202ENST00000372405 SPATA31A1Q5TZJ5 1347 aa17.32■□□□□ 0.36
PTPRF-202ENST00000372405 C8orf34Q49A92 452 aa17.31■□□□□ 0.36
PTPRF-202ENST00000372405 TNS2Q63HR2 1409 aa17.31■□□□□ 0.36
PTPRF-202ENST00000372405 DNAAF4Q8WXU2 420 aa17.31■□□□□ 0.36
PTPRF-202ENST00000372405 USP44Q9H0E7 712 aa17.31■□□□□ 0.36
PTPRF-202ENST00000372405 HYPKQ9NX55 129 aa17.31■□□□□ 0.36
PTPRF-202ENST00000372405 BEND3Q5T5X7 828 aa17.3■□□□□ 0.36
PTPRF-202ENST00000372405 AEBP2Q6ZN18 517 aaPredicted RBP17.3■□□□□ 0.36
PTPRF-202ENST00000372405 LRP10Q7Z4F1 713 aa17.3■□□□□ 0.36
PTPRF-202ENST00000372405 RPAP2Q8IXW5 612 aaPredicted RBP17.3■□□□□ 0.36
PTPRF-202ENST00000372405 GCC1Q96CN9 775 aa17.3■□□□□ 0.36
PTPRF-202ENST00000372405 CERKQ8TCT0 537 aa17.29■□□□□ 0.36
PTPRF-202ENST00000372405 JCADQ9P266 1359 aa17.29■□□□□ 0.36
PTPRF-202ENST00000372405 LRP6O75581 1613 aa17.29■□□□□ 0.36
PTPRF-202ENST00000372405 SPATA31A5Q5VU36 1347 aa17.28■□□□□ 0.36
PTPRF-202ENST00000372405 SPATA31A7Q8IWB4 1347 aa17.28■□□□□ 0.36
PTPRF-202ENST00000372405 FAM161AQ3B820 660 aa17.28■□□□□ 0.36
PTPRF-202ENST00000372405 KSR2Q6VAB6 950 aa17.28■□□□□ 0.36
PTPRF-202ENST00000372405 CHD1LQ86WJ1 897 aa17.28■□□□□ 0.36
PTPRF-202ENST00000372405 SRCIN1Q9C0H9 1055 aa17.28■□□□□ 0.36
PTPRF-202ENST00000372405 DCTPP1Q9H773 170 aa17.28■□□□□ 0.36
PTPRF-202ENST00000372405 GNAI2P04899 355 aa17.28■□□□□ 0.36
PTPRF-202ENST00000372405 PIP4K2AP48426 406 aaPredicted RBP17.28■□□□□ 0.36
PTPRF-202ENST00000372405 LNPKQ9C0E8 428 aa17.28■□□□□ 0.36
PTPRF-202ENST00000372405 MAP3K2Q9Y2U5 619 aa17.28■□□□□ 0.36
PTPRF-202ENST00000372405 EXOC5O00471 708 aa17.27■□□□□ 0.36
PTPRF-202ENST00000372405 GNAI3P08754 354 aa17.27■□□□□ 0.36
PTPRF-202ENST00000372405 MYL6BP14649 208 aa17.27■□□□□ 0.36
PTPRF-202ENST00000372405 PIGBQ92521 554 aa17.27■□□□□ 0.36
PTPRF-202ENST00000372405 THRAP3Q9Y2W1 955 aaKnown RBP17.27■□□□□ 0.36
PTPRF-202ENST00000372405 TMOD3Q9NYL9 352 aa17.26■□□□□ 0.35
PTPRF-202ENST00000372405 DOT1LQ8TEK3 1739 aa17.26■□□□□ 0.35
PTPRF-202ENST00000372405 AIMP1Q12904 312 aaKnown RBP17.26■□□□□ 0.35
PTPRF-202ENST00000372405 ANKRD45Q5TZF3 282 aa17.26■□□□□ 0.35
PTPRF-202ENST00000372405 KAT6BQ8WYB5 2073 aa17.26■□□□□ 0.35
PTPRF-202ENST00000372405 BCL9LQ86UU0 1499 aa17.25■□□□□ 0.35
PTPRF-202ENST00000372405 PTCD1O75127 700 aaKnown RBP17.25■□□□□ 0.35
PTPRF-202ENST00000372405 XAGE3Q8WTP9 111 aa17.25■□□□□ 0.35
PTPRF-202ENST00000372405 LRRFIP2Q9Y608 721 aaKnown RBP17.25■□□□□ 0.35
PTPRF-202ENST00000372405 NBPF7P0C2Y1 421 aaPredicted RBP17.24■□□□□ 0.35
PTPRF-202ENST00000372405 CDCA7Q9BWT1 371 aaPredicted RBP17.24■□□□□ 0.35
PTPRF-202ENST00000372405 ASAP1Q9ULH1 1129 aa17.24■□□□□ 0.35
PTPRF-202ENST00000372405 BCL9O00512 1426 aa17.24■□□□□ 0.35
PTPRF-202ENST00000372405 NBPF26B4DH59 902 aa17.24■□□□□ 0.35
PTPRF-202ENST00000372405 NBPF14Q5TI25 921 aa17.24■□□□□ 0.35
PTPRF-202ENST00000372405 NBPF10Q6P3W6 841 aaKnown RBP17.24■□□□□ 0.35
PTPRF-202ENST00000372405 COPS6Q7L5N1 327 aa17.24■□□□□ 0.35
PTPRF-202ENST00000372405 NBPF15Q8N660 670 aa17.24■□□□□ 0.35
PTPRF-202ENST00000372405 ARFGEF2Q9Y6D5 1785 aa17.23■□□□□ 0.35
PTPRF-202ENST00000372405 PNMA6EA0A0J9YXQ4 647 aa17.23■□□□□ 0.35
PTPRF-202ENST00000372405 UBTFL1P0CB47 393 aaPredicted RBP17.23■□□□□ 0.35
PTPRF-202ENST00000372405 UNC5CLQ8IV45 518 aa17.23■□□□□ 0.35
PTPRF-202ENST00000372405 C8orf37Q96NL8 207 aa17.23■□□□□ 0.35
PTPRF-202ENST00000372405 CWF19L2Q2TBE0 894 aaKnown RBP17.22■□□□□ 0.35
PTPRF-202ENST00000372405 ATG3Q9NT62 314 aa17.22■□□□□ 0.35
PTPRF-202ENST00000372405 DDX58O95786 925 aaKnown RBP17.22■□□□□ 0.35
PTPRF-202ENST00000372405 ATP8B2P98198 1209 aa17.22■□□□□ 0.35
PTPRF-202ENST00000372405 BARGINQ6ZT62 677 aa17.22■□□□□ 0.35
PTPRF-202ENST00000372405 ALDH1L1O75891 902 aa17.21■□□□□ 0.35
PTPRF-202ENST00000372405 IGKV5-2P06315 115 aa17.21■□□□□ 0.35
PTPRF-202ENST00000372405 DDB1Q16531 1140 aa17.21■□□□□ 0.35
PTPRF-202ENST00000372405 ERBB4Q15303 1308 aa17.21■□□□□ 0.35
PTPRF-202ENST00000372405 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.21■□□□□ 0.35
PTPRF-202ENST00000372405 A1BGP04217 495 aa17.2■□□□□ 0.34
PTPRF-202ENST00000372405 MARCH10Q8NA82 808 aaPredicted RBP17.2■□□□□ 0.34
PTPRF-202ENST00000372405 LINS1Q8NG48 757 aa17.2■□□□□ 0.34
PTPRF-202ENST00000372405 NGLY1Q96IV0 654 aa17.2■□□□□ 0.34
PTPRF-202ENST00000372405 CCDC9Q9Y3X0 531 aaKnown RBP17.2■□□□□ 0.34
PTPRF-202ENST00000372405 SPATA31A6Q5VVP1 1343 aa17.2■□□□□ 0.34
PTPRF-202ENST00000372405 HMMRO75330 724 aa17.2■□□□□ 0.34
PTPRF-202ENST00000372405 RIC3Q7Z5B4 369 aa17.2■□□□□ 0.34
PTPRF-202ENST00000372405 FNBP4Q8N3X1 1017 aaPredicted RBP17.2■□□□□ 0.34
PTPRF-202ENST00000372405 NUP188Q5SRE5 1749 aa17.2■□□□□ 0.34
PTPRF-202ENST00000372405 ANKRD13DQ6ZTN6 518 aa17.19■□□□□ 0.34
PTPRF-202ENST00000372405 AFDNP55196 1824 aaKnown RBP17.19■□□□□ 0.34
PTPRF-202ENST00000372405 VPS72Q15906 364 aa17.19■□□□□ 0.34
PTPRF-202ENST00000372405 METTL22Q9BUU2 404 aaPredicted RBP17.19■□□□□ 0.34
PTPRF-202ENST00000372405 HSPA1LP34931 641 aa17.18■□□□□ 0.34
PTPRF-202ENST00000372405 PRIM1P49642 420 aaKnown RBP17.18■□□□□ 0.34
PTPRF-202ENST00000372405 SLC4A9Q96Q91 983 aa17.18■□□□□ 0.34
PTPRF-202ENST00000372405 SMARCA5O60264 1052 aaPredicted RBP17.17■□□□□ 0.34
PTPRF-202ENST00000372405 SEC24BO95487 1268 aa17.17■□□□□ 0.34
PTPRF-202ENST00000372405 VSIG10Q8N0Z9 540 aa17.17■□□□□ 0.34
PTPRF-202ENST00000372405 SSH3Q8TE77 659 aa17.17■□□□□ 0.34
PTPRF-202ENST00000372405 UTYO14607 1347 aa17.17■□□□□ 0.34
PTPRF-202ENST00000372405 IBTKQ9P2D0 1353 aaPredicted RBP17.17■□□□□ 0.34
PTPRF-202ENST00000372405 NEURL1BA8MQ27 555 aa17.17■□□□□ 0.34
PTPRF-202ENST00000372405 APBB1O00213 710 aa17.17■□□□□ 0.34
PTPRF-202ENST00000372405 POLA2Q14181 598 aa17.17■□□□□ 0.34
PTPRF-202ENST00000372405 DNAJC10Q8IXB1 793 aa17.17■□□□□ 0.34
PTPRF-202ENST00000372405 C16orf71Q8IYS4 520 aaPredicted RBP17.17■□□□□ 0.34
PTPRF-202ENST00000372405 EXOC6BQ9Y2D4 811 aa17.17■□□□□ 0.34
PTPRF-202ENST00000372405 TJP1Q07157 1748 aa17.16■□□□□ 0.34
PTPRF-202ENST00000372405 FAM98CQ17RN3 349 aaKnown RBP17.16■□□□□ 0.34
PTPRF-202ENST00000372405 TTLL7Q6ZT98 887 aa17.16■□□□□ 0.34
PTPRF-202ENST00000372405 PPP1R42Q7Z4L9 355 aa17.16■□□□□ 0.34
PTPRF-202ENST00000372405 OTUD7AQ8TE49 926 aaPredicted RBP17.16■□□□□ 0.34
PTPRF-202ENST00000372405 SYTL4Q96C24 671 aaPredicted RBP17.16■□□□□ 0.34
PTPRF-202ENST00000372405 KAZALD1Q96I82 304 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 172.8 ms