RNA–Protein interactions for RNA: ENST00000361367.6

CTR9-201, Transcript of CTR9 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTR9, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9-201ENST00000361367 MRPL50Q8N5N7 158 aaKnown RBP16.53■□□□□ 0.24
CTR9-201ENST00000361367 JAKMIP1Q96N16 626 aaKnown RBP16.53■□□□□ 0.24
CTR9-201ENST00000361367 CDC5LQ99459 802 aaKnown RBP16.53■□□□□ 0.24
CTR9-201ENST00000361367 PLEKHG1Q9ULL1 1385 aa16.53■□□□□ 0.24
CTR9-201ENST00000361367 PCDH11XQ9BZA7 1347 aa16.53■□□□□ 0.24
CTR9-201ENST00000361367 PCDH11YQ9BZA8 1340 aa16.53■□□□□ 0.24
CTR9-201ENST00000361367 VAMP4O75379 141 aa16.53■□□□□ 0.24
CTR9-201ENST00000361367 ATP2B1P20020 1258 aa16.53■□□□□ 0.24
CTR9-201ENST00000361367 UGGT1Q9NYU2 1555 aa16.53■□□□□ 0.24
CTR9-201ENST00000361367 SPATA31E1Q6ZUB1 1445 aa16.52■□□□□ 0.24
CTR9-201ENST00000361367 STK3Q13188 491 aa16.52■□□□□ 0.24
CTR9-201ENST00000361367 ZSCAN29Q8IWY8 852 aaPredicted RBP16.52■□□□□ 0.24
CTR9-201ENST00000361367 KRT32Q14532 448 aa16.52■□□□□ 0.24
CTR9-201ENST00000361367 ARHGEF10O15013 1369 aa16.52■□□□□ 0.23
CTR9-201ENST00000361367 SBNO2Q9Y2G9 1366 aa16.52■□□□□ 0.23
CTR9-201ENST00000361367 ECHDC1Q9NTX5 307 aa16.51■□□□□ 0.23
CTR9-201ENST00000361367 ALDH1L1O75891 902 aa16.51■□□□□ 0.23
CTR9-201ENST00000361367 NBPF6Q5VWK0 638 aa16.51■□□□□ 0.23
CTR9-201ENST00000361367 NBPF5PQ86XG9 351 aaPredicted RBP16.51■□□□□ 0.23
CTR9-201ENST00000361367 NBPF4Q96M43 638 aa16.51■□□□□ 0.23
CTR9-201ENST00000361367 UBAC1Q9BSL1 405 aa16.5■□□□□ 0.23
CTR9-201ENST00000361367 ERVK-7P63135 1459 aa16.5■□□□□ 0.23
CTR9-201ENST00000361367 CCDC69A6NI79 296 aa16.5■□□□□ 0.23
CTR9-201ENST00000361367 DDX46Q7L014 1031 aaKnown RBP16.5■□□□□ 0.23
CTR9-201ENST00000361367 TRIM22Q8IYM9 498 aa16.5■□□□□ 0.23
CTR9-201ENST00000361367 CCDC43Q96MW1 224 aaKnown RBP16.5■□□□□ 0.23
CTR9-201ENST00000361367 TMEM94Q12767 1356 aa16.5■□□□□ 0.23
CTR9-201ENST00000361367 GRM8O00222 908 aa16.5■□□□□ 0.23
CTR9-201ENST00000361367 MAP3K12Q12852 859 aa16.5■□□□□ 0.23
CTR9-201ENST00000361367 K7ELQ4 463 aaPredicted RBP16.49■□□□□ 0.23
CTR9-201ENST00000361367 IMMTQ16891 758 aaKnown RBP16.49■□□□□ 0.23
CTR9-201ENST00000361367 GLIPR1L2Q4G1C9 344 aa16.49■□□□□ 0.23
CTR9-201ENST00000361367 NUP133Q8WUM0 1156 aa16.49■□□□□ 0.23
CTR9-201ENST00000361367 GSE1Q14687 1217 aa16.49■□□□□ 0.23
CTR9-201ENST00000361367 PDRG1Q9NUG6 133 aa16.49■□□□□ 0.23
CTR9-201ENST00000361367 LINS1Q8NG48 757 aa16.49■□□□□ 0.23
CTR9-201ENST00000361367 CDCA7Q9BWT1 371 aaPredicted RBP16.48■□□□□ 0.23
CTR9-201ENST00000361367 C6orf229H3BNL8 230 aa16.48■□□□□ 0.23
CTR9-201ENST00000361367 TMOD2Q9NZR1 351 aa16.48■□□□□ 0.23
CTR9-201ENST00000361367 NPHP4O75161 1426 aaPredicted RBP16.47■□□□□ 0.23
CTR9-201ENST00000361367 DZIP1Q86YF9 867 aaKnown RBP16.47■□□□□ 0.23
CTR9-201ENST00000361367 U3KPZ7 1027 aaPredicted RBP16.47■□□□□ 0.23
CTR9-201ENST00000361367 IGHDP01880 384 aa16.47■□□□□ 0.23
CTR9-201ENST00000361367 SETDB2Q96T68 719 aa16.47■□□□□ 0.23
CTR9-201ENST00000361367 SDF4Q9BRK5 362 aa16.47■□□□□ 0.23
CTR9-201ENST00000361367 ZNF219Q9P2Y4 722 aaPredicted RBP16.47■□□□□ 0.23
CTR9-201ENST00000361367 ARAP3Q8WWN8 1544 aa16.47■□□□□ 0.23
CTR9-201ENST00000361367 TPM2P07951 284 aa16.46■□□□□ 0.23
CTR9-201ENST00000361367 SASS6Q6UVJ0 657 aa16.46■□□□□ 0.23
CTR9-201ENST00000361367 LMBR1LQ6UX01 489 aa16.46■□□□□ 0.23
CTR9-201ENST00000361367 PRDM15P57071 1507 aaPredicted RBP16.46■□□□□ 0.23
CTR9-201ENST00000361367 NLRP1Q9C000 1473 aa16.46■□□□□ 0.23
CTR9-201ENST00000361367 NFKBIBQ15653 356 aa16.46■□□□□ 0.23
CTR9-201ENST00000361367 DZIP3Q86Y13 1208 aaKnown RBP16.46■□□□□ 0.23
CTR9-201ENST00000361367 RHPN1Q8TCX5 695 aa16.46■□□□□ 0.23
CTR9-201ENST00000361367 CCDC152Q4G0S7 254 aa16.46■□□□□ 0.23
CTR9-201ENST00000361367 NIP7Q9Y221 180 aaKnown RBP eCLIP16.46■□□□□ 0.23
CTR9-201ENST00000361367 PCDHB15Q9Y5E8 787 aa16.46■□□□□ 0.23
CTR9-201ENST00000361367 TSR1Q2NL82 804 aaKnown RBP16.46■□□□□ 0.22
CTR9-201ENST00000361367 PRPF40BQ6NWY9 871 aaKnown RBP16.46■□□□□ 0.22
CTR9-201ENST00000361367 SNRKQ9NRH2 765 aa16.46■□□□□ 0.22
CTR9-201ENST00000361367 UPF3BQ9BZI7 483 aaKnown RBP16.45■□□□□ 0.22
CTR9-201ENST00000361367 NAPBQ9H115 298 aa16.45■□□□□ 0.22
CTR9-201ENST00000361367 CASTP20810 708 aaKnown RBP16.45■□□□□ 0.22
CTR9-201ENST00000361367 HDAC1Q13547 482 aaPredicted RBP16.45■□□□□ 0.22
CTR9-201ENST00000361367 ZNF790Q6PG37 636 aa16.45■□□□□ 0.22
CTR9-201ENST00000361367 ANKRD44Q8N8A2 993 aa16.45■□□□□ 0.22
CTR9-201ENST00000361367 FIBPO43427 364 aa16.45■□□□□ 0.22
CTR9-201ENST00000361367 USP5P45974 858 aa16.45■□□□□ 0.22
CTR9-201ENST00000361367 ANKRD20A12PQ8NF67 263 aa16.45■□□□□ 0.22
CTR9-201ENST00000361367 ZSCAN31Q96LW9 406 aaPredicted RBP16.45■□□□□ 0.22
CTR9-201ENST00000361367 MYOM2P54296 1465 aa16.44■□□□□ 0.22
CTR9-201ENST00000361367 MINDY4BA8MYZ0 360 aa16.44■□□□□ 0.22
CTR9-201ENST00000361367 EVI5LQ96CN4 794 aa16.44■□□□□ 0.22
CTR9-201ENST00000361367 ABCC3O15438 1527 aa16.44■□□□□ 0.22
CTR9-201ENST00000361367 GOLIM4O00461 696 aa16.44■□□□□ 0.22
CTR9-201ENST00000361367 TPM1P09493 284 aa16.44■□□□□ 0.22
CTR9-201ENST00000361367 LARP1BQ659C4 914 aaKnown RBP16.44■□□□□ 0.22
CTR9-201ENST00000361367 DNAJC5Q9H3Z4 198 aa16.44■□□□□ 0.22
CTR9-201ENST00000361367 DDX21Q9NR30 783 aaKnown RBP eCLIP16.44■□□□□ 0.22
CTR9-201ENST00000361367 PLXNC1O60486 1568 aa16.44■□□□□ 0.22
CTR9-201ENST00000361367 NLRP3Q96P20 1036 aa16.43■□□□□ 0.22
CTR9-201ENST00000361367 LGR6Q9HBX8 967 aa16.43■□□□□ 0.22
CTR9-201ENST00000361367 TNNQ9UQP3 1299 aa16.43■□□□□ 0.22
CTR9-201ENST00000361367 SOS1Q07889 1333 aaPredicted RBP16.43■□□□□ 0.22
CTR9-201ENST00000361367 ST5P78524 1137 aa16.43■□□□□ 0.22
CTR9-201ENST00000361367 STK38Q15208 465 aa16.43■□□□□ 0.22
CTR9-201ENST00000361367 CWF19L2Q2TBE0 894 aaKnown RBP16.43■□□□□ 0.22
CTR9-201ENST00000361367 TSHZ3Q63HK5 1081 aa16.43■□□□□ 0.22
CTR9-201ENST00000361367 RTCBQ9Y3I0 505 aaKnown RBP16.43■□□□□ 0.22
CTR9-201ENST00000361367 ROBO2Q9HCK4 1378 aa16.43■□□□□ 0.22
CTR9-201ENST00000361367 BMP2KLQ5H9B9 411 aa16.43■□□□□ 0.22
CTR9-201ENST00000361367 ZNF396Q96N95 335 aaPredicted RBP16.43■□□□□ 0.22
CTR9-201ENST00000361367 CDC42BPAQ5VT25 1732 aa16.43■□□□□ 0.22
CTR9-201ENST00000361367 TPM3P06753 285 aa16.43■□□□□ 0.22
CTR9-201ENST00000361367 CEBPZQ03701 1054 aaKnown RBP16.43■□□□□ 0.22
CTR9-201ENST00000361367 CDKL5O76039 1030 aa16.42■□□□□ 0.22
CTR9-201ENST00000361367 ATP8B2P98198 1209 aa16.42■□□□□ 0.22
CTR9-201ENST00000361367 ZNF622Q969S3 477 aaKnown RBP eCLIP16.42■□□□□ 0.221e-6■■■■□ 24.9
CTR9-201ENST00000361367 PHAXQ9H814 394 aaKnown RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms