RNA–Protein interactions for RNA: ENST00000357890.9

RNF40-202, Transcript of ring finger protein 40, humanhuman

TSL 2 BASIC

Gene RNF40, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-202ENST00000357890 LMBRD1Q9NUN5 540 aa11.94□□□□□ -0.5
RNF40-202ENST00000357890 MX1P20591 662 aa11.94□□□□□ -0.5
RNF40-202ENST00000357890 MCM2P49736 904 aa11.94□□□□□ -0.5
RNF40-202ENST00000357890 TMX3Q96JJ7 454 aa11.94□□□□□ -0.5
RNF40-202ENST00000357890 KIF2CQ99661 725 aa11.94□□□□□ -0.5
RNF40-202ENST00000357890 AMOTL2Q9Y2J4 779 aa11.94□□□□□ -0.5
RNF40-202ENST00000357890 DLC1Q96QB1 1528 aa11.94□□□□□ -0.5
RNF40-202ENST00000357890 PDE1AP54750 535 aa11.93□□□□□ -0.5
RNF40-202ENST00000357890 PAXIP1Q6ZW49 1069 aaPredicted RBP11.93□□□□□ -0.5
RNF40-202ENST00000357890 LARP6Q9BRS8 491 aaKnown RBP11.93□□□□□ -0.5
RNF40-202ENST00000357890 MTHFSDQ2M296 383 aaKnown RBP11.93□□□□□ -0.5
RNF40-202ENST00000357890 TAF3Q5VWG9 929 aa11.93□□□□□ -0.5
RNF40-202ENST00000357890 ANKLE2Q86XL3 938 aa11.93□□□□□ -0.5
RNF40-202ENST00000357890 KIAA0232Q92628 1395 aa11.93□□□□□ -0.5
RNF40-202ENST00000357890 PRR36Q9H6K5 1346 aa11.93□□□□□ -0.5
RNF40-202ENST00000357890 MSH6P52701 1360 aa11.93□□□□□ -0.5
RNF40-202ENST00000357890 PLEKHG3A1L390 1219 aa11.92□□□□□ -0.5
RNF40-202ENST00000357890 FOXO3O43524 673 aa11.92□□□□□ -0.5
RNF40-202ENST00000357890 GORABQ5T7V8 394 aa11.92□□□□□ -0.5
RNF40-202ENST00000357890 NUTM1Q86Y26 1132 aa11.92□□□□□ -0.5
RNF40-202ENST00000357890 TTC21AQ8NDW8 1320 aa11.92□□□□□ -0.5
RNF40-202ENST00000357890 GNAT3A8MTJ3 354 aa11.92□□□□□ -0.5
RNF40-202ENST00000357890 ATP2B3Q16720 1220 aa11.92□□□□□ -0.5
RNF40-202ENST00000357890 MAP3K19Q56UN5 1328 aa11.92□□□□□ -0.5
RNF40-202ENST00000357890 RIOK3O14730 519 aaKnown RBP11.92□□□□□ -0.5
RNF40-202ENST00000357890 ABTB2Q8N961 1025 aa11.92□□□□□ -0.5
RNF40-202ENST00000357890 CLTCQ00610 1675 aaKnown RBP11.92□□□□□ -0.5
RNF40-202ENST00000357890 ZFP91Q96JP5 570 aaPredicted RBP11.92□□□□□ -0.5
RNF40-202ENST00000357890 TMEM2Q9UHN6 1383 aa11.91□□□□□ -0.5
RNF40-202ENST00000357890 FLIIQ13045 1269 aa11.91□□□□□ -0.5
RNF40-202ENST00000357890 G2E3Q7L622 706 aa11.91□□□□□ -0.5
RNF40-202ENST00000357890 SMC3Q9UQE7 1217 aa11.91□□□□□ -0.5
RNF40-202ENST00000357890 DTNBO60941 627 aa11.91□□□□□ -0.5
RNF40-202ENST00000357890 VIRMAQ69YN4 1812 aaKnown RBP11.91□□□□□ -0.5
RNF40-202ENST00000357890 HDGFL1Q5TGJ6 251 aa11.91□□□□□ -0.5
RNF40-202ENST00000357890 CERS3Q8IU89 383 aa11.91□□□□□ -0.5
RNF40-202ENST00000357890 CCAR2Q8N163 923 aaKnown RBP11.91□□□□□ -0.5
RNF40-202ENST00000357890 GPT2Q8TD30 523 aa11.91□□□□□ -0.5
RNF40-202ENST00000357890 LRRFIP2Q9Y608 721 aaKnown RBP11.91□□□□□ -0.5
RNF40-202ENST00000357890 RTL1A6NKG5 1358 aa11.9□□□□□ -0.5
RNF40-202ENST00000357890 FLT4P35916 1363 aa11.9□□□□□ -0.5
RNF40-202ENST00000357890 GOLGA6L19H0YKK7 550 aa11.9□□□□□ -0.5
RNF40-202ENST00000357890 CAMK4Q16566 473 aa11.9□□□□□ -0.5
RNF40-202ENST00000357890 GIMAP6Q6P9H5 292 aa11.9□□□□□ -0.5
RNF40-202ENST00000357890 HTATSF1O43719 755 aaKnown RBP11.9□□□□□ -0.51
RNF40-202ENST00000357890 GNL2Q13823 731 aaKnown RBP11.9□□□□□ -0.51
RNF40-202ENST00000357890 TNNT1P13805 278 aa11.89□□□□□ -0.51
RNF40-202ENST00000357890 GTF2F1P35269 517 aaKnown RBP eCLIP11.89□□□□□ -0.51
RNF40-202ENST00000357890 TEFQ10587 303 aa11.89□□□□□ -0.51
RNF40-202ENST00000357890 UTP14CQ5TAP6 766 aaKnown RBP11.89□□□□□ -0.51
RNF40-202ENST00000357890 ZBTB9Q96C00 473 aa11.89□□□□□ -0.51
RNF40-202ENST00000357890 SRCIN1Q9C0H9 1055 aa11.89□□□□□ -0.51
RNF40-202ENST00000357890 ATP6V1DQ9Y5K8 247 aa11.89□□□□□ -0.51
RNF40-202ENST00000357890 ROBO2Q9HCK4 1378 aa11.89□□□□□ -0.51
RNF40-202ENST00000357890 SRGAP3O43295 1099 aa11.89□□□□□ -0.51
RNF40-202ENST00000357890 ZSCAN20P17040 1043 aaPredicted RBP11.89□□□□□ -0.51
RNF40-202ENST00000357890 CWC27Q6UX04 472 aaKnown RBP11.89□□□□□ -0.51
RNF40-202ENST00000357890 EYA1Q99502 592 aa11.89□□□□□ -0.51
RNF40-202ENST00000357890 NRDCO43847 1150 aa11.89□□□□□ -0.51
RNF40-202ENST00000357890 TIGD1Q96MW7 591 aa11.89□□□□□ -0.51
RNF40-202ENST00000357890 C9orf78Q9NZ63 289 aaPredicted RBP11.89□□□□□ -0.51
RNF40-202ENST00000357890 NSFL1CQ9UNZ2 370 aaKnown RBP11.89□□□□□ -0.51
RNF40-202ENST00000357890 WDR33Q9C0J8 1336 aaKnown RBP11.88□□□□□ -0.51
RNF40-202ENST00000357890 MYO5BQ9ULV0 1848 aa11.88□□□□□ -0.51
RNF40-202ENST00000357890 TAF7Q15545 349 aaPredicted RBP11.88□□□□□ -0.51
RNF40-202ENST00000357890 FAM184AQ8NB25 1140 aa11.88□□□□□ -0.51
RNF40-202ENST00000357890 BECN2A8MW95 431 aa11.88□□□□□ -0.51
RNF40-202ENST00000357890 POLR3GO15318 223 aaPredicted RBP11.88□□□□□ -0.51
RNF40-202ENST00000357890 ESYT1Q9BSJ8 1104 aa11.88□□□□□ -0.51
RNF40-202ENST00000357890 TRIM34Q9BYJ4 488 aa11.88□□□□□ -0.51
RNF40-202ENST00000357890 PIBF1Q8WXW3 757 aa11.88□□□□□ -0.51
RNF40-202ENST00000357890 SPATA31D1Q6ZQQ2 1576 aa11.88□□□□□ -0.51
RNF40-202ENST00000357890 HOMER1Q86YM7 354 aa11.87□□□□□ -0.51
RNF40-202ENST00000357890 BICD2Q8TD16 824 aa11.87□□□□□ -0.51
RNF40-202ENST00000357890 DDX54Q8TDD1 881 aaKnown RBP11.87□□□□□ -0.51
RNF40-202ENST00000357890 KIF20BQ96Q89 1820 aa11.87□□□□□ -0.51
RNF40-202ENST00000357890 LTKP29376 864 aa11.87□□□□□ -0.51
RNF40-202ENST00000357890 GPATCH3Q96I76 525 aa11.87□□□□□ -0.51
RNF40-202ENST00000357890 TRMT1Q9NXH9 659 aaKnown RBP11.87□□□□□ -0.51
RNF40-202ENST00000357890 HDAC5Q9UQL6 1122 aa11.87□□□□□ -0.51
RNF40-202ENST00000357890 CDC42BPGQ6DT37 1551 aa11.87□□□□□ -0.51
RNF40-202ENST00000357890 IFIT2P09913 472 aaKnown RBP11.87□□□□□ -0.51
RNF40-202ENST00000357890 SKIDA1Q1XH10 827 aa11.87□□□□□ -0.51
RNF40-202ENST00000357890 FILIP1Q7Z7B0 1213 aa11.87□□□□□ -0.51
RNF40-202ENST00000357890 CNTROBQ8N137 903 aa11.87□□□□□ -0.51
RNF40-202ENST00000357890 CPS1P31327 1500 aa11.87□□□□□ -0.51
RNF40-202ENST00000357890 SBNO1A3KN83 1393 aa11.86□□□□□ -0.51
RNF40-202ENST00000357890 ANKRD26Q9UPS8 1709 aa11.86□□□□□ -0.51
RNF40-202ENST00000357890 TEX35Q5T0J7 233 aa11.86□□□□□ -0.51
RNF40-202ENST00000357890 ARHGEF10O15013 1369 aa11.86□□□□□ -0.51
RNF40-202ENST00000357890 ZKSCAN1P17029 563 aaPredicted RBP11.86□□□□□ -0.51
RNF40-202ENST00000357890 HSP90AB4PQ58FF6 505 aa11.86□□□□□ -0.51
RNF40-202ENST00000357890 USP48Q86UV5 1035 aa11.86□□□□□ -0.51
RNF40-202ENST00000357890 USP6P35125 1406 aa11.86□□□□□ -0.51
RNF40-202ENST00000357890 GTF2E1P29083 439 aaPredicted RBP11.86□□□□□ -0.51
RNF40-202ENST00000357890 DDIT3P35638 169 aa11.86□□□□□ -0.51
RNF40-202ENST00000357890 CCDC183Q5T5S1 534 aa11.86□□□□□ -0.51
RNF40-202ENST00000357890 RUFY2Q8WXA3 655 aa11.86□□□□□ -0.51
RNF40-202ENST00000357890 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.86□□□□□ -0.51
RNF40-202ENST00000357890 MAP2P11137 1827 aaKnown RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms