RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 WDR17Q8IZU2 1322 aa13.67□□□□□ -0.22
SVIP-201ENST00000354193 KDRP35968 1356 aa13.67□□□□□ -0.22
SVIP-201ENST00000354193 TNS3Q68CZ2 1445 aa13.67□□□□□ -0.22
SVIP-201ENST00000354193 SIRT2Q8IXJ6 389 aa13.67□□□□□ -0.22
SVIP-201ENST00000354193 ANKRD44Q8N8A2 993 aa13.67□□□□□ -0.22
SVIP-201ENST00000354193 ADAMTSL3P82987 1691 aa13.67□□□□□ -0.22
SVIP-201ENST00000354193 GORABQ5T7V8 394 aa13.67□□□□□ -0.22
SVIP-201ENST00000354193 ASAP1Q9ULH1 1129 aa13.67□□□□□ -0.22
SVIP-201ENST00000354193 SMC5Q8IY18 1101 aa13.67□□□□□ -0.22
SVIP-201ENST00000354193 ABCC4O15439 1325 aa13.67□□□□□ -0.22
SVIP-201ENST00000354193 SETD1AO15047 1707 aaKnown RBP13.66□□□□□ -0.22
SVIP-201ENST00000354193 BICDL1Q6ZP65 573 aa13.66□□□□□ -0.22
SVIP-201ENST00000354193 NUCB1Q02818 461 aa13.66□□□□□ -0.22
SVIP-201ENST00000354193 ANO2Q9NQ90 1003 aa13.66□□□□□ -0.22
SVIP-201ENST00000354193 USP32Q8NFA0 1604 aa13.66□□□□□ -0.22
SVIP-201ENST00000354193 TBC1D2BQ9UPU7 963 aa13.66□□□□□ -0.22
SVIP-201ENST00000354193 KSR2Q6VAB6 950 aa13.65□□□□□ -0.22
SVIP-201ENST00000354193 DNAJC10Q8IXB1 793 aa13.65□□□□□ -0.22
SVIP-201ENST00000354193 PCDH11XQ9BZA7 1347 aa13.65□□□□□ -0.22
SVIP-201ENST00000354193 PCDH11YQ9BZA8 1340 aa13.65□□□□□ -0.22
SVIP-201ENST00000354193 USP44Q9H0E7 712 aa13.65□□□□□ -0.22
SVIP-201ENST00000354193 CLASRPQ8N2M8 674 aaKnown RBP13.65□□□□□ -0.22
SVIP-201ENST00000354193 CCDC8Q9H0W5 538 aaPredicted RBP13.65□□□□□ -0.22
SVIP-201ENST00000354193 CRB1P82279 1406 aa13.65□□□□□ -0.22
SVIP-201ENST00000354193 HSCBQ8IWL3 235 aa13.65□□□□□ -0.22
SVIP-201ENST00000354193 DDX21Q9NR30 783 aaKnown RBP eCLIP13.65□□□□□ -0.22
SVIP-201ENST00000354193 KIF24Q5T7B8 1368 aa13.64□□□□□ -0.23
SVIP-201ENST00000354193 HDAC5Q9UQL6 1122 aa13.63□□□□□ -0.23
SVIP-201ENST00000354193 KIF6Q6ZMV9 814 aa13.63□□□□□ -0.23
SVIP-201ENST00000354193 TTLL7Q6ZT98 887 aa13.63□□□□□ -0.23
SVIP-201ENST00000354193 STARD3NLO95772 234 aa13.63□□□□□ -0.23
SVIP-201ENST00000354193 AACSQ86V21 672 aa13.62□□□□□ -0.23
SVIP-201ENST00000354193 CARD10Q9BWT7 1032 aa13.62□□□□□ -0.23
SVIP-201ENST00000354193 DCTPP1Q9H773 170 aa13.62□□□□□ -0.23
SVIP-201ENST00000354193 KIAA1211Q6ZU35 1233 aa13.62□□□□□ -0.23
SVIP-201ENST00000354193 GRM8O00222 908 aa13.62□□□□□ -0.23
SVIP-201ENST00000354193 CDC45O75419 566 aa13.61□□□□□ -0.23
SVIP-201ENST00000354193 SOS2Q07890 1332 aaPredicted RBP13.61□□□□□ -0.23
SVIP-201ENST00000354193 FOXD4L5Q5VV16 416 aaPredicted RBP13.61□□□□□ -0.23
SVIP-201ENST00000354193 FOXD4L4Q8WXT5 416 aaPredicted RBP13.61□□□□□ -0.23
SVIP-201ENST00000354193 DNAJC2Q99543 621 aaKnown RBP13.6□□□□□ -0.23
SVIP-201ENST00000354193 MX1P20591 662 aa13.6□□□□□ -0.23
SVIP-201ENST00000354193 LINS1Q8NG48 757 aa13.6□□□□□ -0.23
SVIP-201ENST00000354193 NAP1L2Q9ULW6 460 aaPredicted RBP13.6□□□□□ -0.23
SVIP-201ENST00000354193 KNDC1Q76NI1 1749 aa13.6□□□□□ -0.23
SVIP-201ENST00000354193 NALCNQ8IZF0 1738 aa13.6□□□□□ -0.23
SVIP-201ENST00000354193 ATP8B2P98198 1209 aa13.6□□□□□ -0.23
SVIP-201ENST00000354193 TBC1D9Q6ZT07 1266 aa13.6□□□□□ -0.23
SVIP-201ENST00000354193 GPATCH3Q96I76 525 aa13.6□□□□□ -0.23
SVIP-201ENST00000354193 BICC1Q9H694 974 aaKnown RBP13.6□□□□□ -0.23
SVIP-201ENST00000354193 ATP6V1AP38606 617 aa13.59□□□□□ -0.23
SVIP-201ENST00000354193 BOLA2Q9H3K6 86 aa13.59□□□□□ -0.23
SVIP-201ENST00000354193 DIAPH3Q9NSV4 1193 aa13.59□□□□□ -0.23
SVIP-201ENST00000354193 LMBR1LQ6UX01 489 aa13.59□□□□□ -0.23
SVIP-201ENST00000354193 PXDNQ92626 1479 aa13.59□□□□□ -0.23
SVIP-201ENST00000354193 PIK3C2AO00443 1686 aa13.59□□□□□ -0.23
SVIP-201ENST00000354193 PLEKHM2Q8IWE5 1019 aa13.58□□□□□ -0.23
SVIP-201ENST00000354193 FAM89AQ96GI7 184 aa13.58□□□□□ -0.23
SVIP-201ENST00000354193 ADGRB2O60241 1585 aa13.58□□□□□ -0.23
SVIP-201ENST00000354193 XRN1Q8IZH2 1706 aaKnown RBP13.58□□□□□ -0.24
SVIP-201ENST00000354193 RHPN1Q8TCX5 695 aa13.58□□□□□ -0.24
SVIP-201ENST00000354193 PIGBQ92521 554 aa13.58□□□□□ -0.24
SVIP-201ENST00000354193 MON2Q7Z3U7 1717 aa13.58□□□□□ -0.24
SVIP-201ENST00000354193 SDSP20132 328 aa13.58□□□□□ -0.24
SVIP-201ENST00000354193 SUCLG2Q96I99 432 aa13.58□□□□□ -0.24
SVIP-201ENST00000354193 FOXD4L6Q3SYB3 417 aaPredicted RBP13.58□□□□□ -0.24
SVIP-201ENST00000354193 BEND3Q5T5X7 828 aa13.58□□□□□ -0.24
SVIP-201ENST00000354193 FOXD4L3Q6VB84 417 aaPredicted RBP13.58□□□□□ -0.24
SVIP-201ENST00000354193 CHD2O14647 1828 aaKnown RBP13.57□□□□□ -0.24
SVIP-201ENST00000354193 HSP90AB4PQ58FF6 505 aa13.57□□□□□ -0.24
SVIP-201ENST00000354193 CWC27Q6UX04 472 aaKnown RBP13.57□□□□□ -0.24
SVIP-201ENST00000354193 SMIM5Q71RC9 77 aa13.57□□□□□ -0.24
SVIP-201ENST00000354193 KIF1BPQ96EK5 621 aa13.57□□□□□ -0.24
SVIP-201ENST00000354193 BABAM1Q9NWV8 329 aa13.57□□□□□ -0.24
SVIP-201ENST00000354193 BRPF1P55201 1214 aaPredicted RBP13.56□□□□□ -0.24
SVIP-201ENST00000354193 NDUFB9Q9Y6M9 179 aa13.56□□□□□ -0.24
SVIP-201ENST00000354193 PDE1AP54750 535 aa13.56□□□□□ -0.24
SVIP-201ENST00000354193 TRMT112Q9UI30 125 aaKnown RBP13.56□□□□□ -0.24
SVIP-201ENST00000354193 PEAK1Q9H792 1746 aa13.56□□□□□ -0.24
SVIP-201ENST00000354193 PHF14O94880 888 aa13.56□□□□□ -0.24
SVIP-201ENST00000354193 CCDC24Q8N4L8 307 aa13.56□□□□□ -0.24
SVIP-201ENST00000354193 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.56□□□□□ -0.24
SVIP-201ENST00000354193 FGD1P98174 961 aa13.56□□□□□ -0.24
SVIP-201ENST00000354193 MEGF6O75095 1541 aa13.56□□□□□ -0.24
SVIP-201ENST00000354193 USP21Q9UK80 565 aa13.55□□□□□ -0.24
SVIP-201ENST00000354193 HOXB7P09629 217 aa13.55□□□□□ -0.24
SVIP-201ENST00000354193 CCDC57Q2TAC2 916 aa13.55□□□□□ -0.24
SVIP-201ENST00000354193 ZNF594Q96JF6 807 aaPredicted RBP13.55□□□□□ -0.24
SVIP-201ENST00000354193 FSD1Q9BTV5 496 aa13.55□□□□□ -0.24
SVIP-201ENST00000354193 FMN2Q9NZ56 1722 aa13.55□□□□□ -0.24
SVIP-201ENST00000354193 CWC25Q9NXE8 425 aaPredicted RBP13.55□□□□□ -0.24
SVIP-201ENST00000354193 KCNQ2O43526 872 aa13.54□□□□□ -0.24
SVIP-201ENST00000354193 MCCP23508 829 aa13.54□□□□□ -0.24
SVIP-201ENST00000354193 BMP2KLQ5H9B9 411 aa13.54□□□□□ -0.24
SVIP-201ENST00000354193 TTC22Q5TAA0 569 aa13.54□□□□□ -0.24
SVIP-201ENST00000354193 SOS1Q07889 1333 aaPredicted RBP13.54□□□□□ -0.24
SVIP-201ENST00000354193 CNNM1Q9NRU3 951 aa13.54□□□□□ -0.24
SVIP-201ENST00000354193 AKAP12Q02952 1782 aa13.53□□□□□ -0.24
SVIP-201ENST00000354193 REC8O95072 547 aa13.53□□□□□ -0.24
SVIP-201ENST00000354193 GCKRQ14397 625 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms