RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 USP16Q9Y5T5 823 aa17.04■□□□□ 0.32
TRIM4-201ENST00000349062 RRAGDQ9NQL2 400 aaPredicted RBP17.04■□□□□ 0.32
TRIM4-201ENST00000349062 COPS6Q7L5N1 327 aa17.03■□□□□ 0.32
TRIM4-201ENST00000349062 FMN2Q9NZ56 1722 aa17.03■□□□□ 0.32
TRIM4-201ENST00000349062 SOS1Q07889 1333 aaPredicted RBP17.03■□□□□ 0.32
TRIM4-201ENST00000349062 XAGE3Q8WTP9 111 aa17.03■□□□□ 0.32
TRIM4-201ENST00000349062 SYTL4Q96C24 671 aaPredicted RBP17.03■□□□□ 0.32
TRIM4-201ENST00000349062 MYD88Q99836 296 aa17.03■□□□□ 0.32
TRIM4-201ENST00000349062 NPHP3Q7Z494 1330 aa17.02■□□□□ 0.32
TRIM4-201ENST00000349062 ZNF790Q6PG37 636 aa17.02■□□□□ 0.32
TRIM4-201ENST00000349062 UPF3BQ9BZI7 483 aaKnown RBP17.02■□□□□ 0.32
TRIM4-201ENST00000349062 SPG7Q9UQ90 795 aa17.02■□□□□ 0.32
TRIM4-201ENST00000349062 CCDC85AQ96PX6 553 aaPredicted RBP17.02■□□□□ 0.31
TRIM4-201ENST00000349062 CHMP5Q9NZZ3 219 aa17.01■□□□□ 0.31
TRIM4-201ENST00000349062 NCLP19338 710 aaKnown RBP17■□□□□ 0.31
TRIM4-201ENST00000349062 BEND3Q5T5X7 828 aa17■□□□□ 0.31
TRIM4-201ENST00000349062 CCDC8Q9H0W5 538 aaPredicted RBP17■□□□□ 0.31
TRIM4-201ENST00000349062 RGPD2P0DJD1 1756 aa17■□□□□ 0.31
TRIM4-201ENST00000349062 KIF2CQ99661 725 aa17■□□□□ 0.31
TRIM4-201ENST00000349062 PANK2Q9BZ23 570 aa17■□□□□ 0.31
TRIM4-201ENST00000349062 ANTXR1Q9H6X2 564 aa17■□□□□ 0.31
TRIM4-201ENST00000349062 CHD2O14647 1828 aaKnown RBP17■□□□□ 0.31
TRIM4-201ENST00000349062 CYP27B1O15528 508 aa17■□□□□ 0.31
TRIM4-201ENST00000349062 NEK4P51957 841 aa17■□□□□ 0.31
TRIM4-201ENST00000349062 RHPN1Q8TCX5 695 aa17■□□□□ 0.31
TRIM4-201ENST00000349062 IFNL2Q8IZJ0 200 aa16.99■□□□□ 0.31
TRIM4-201ENST00000349062 LTN1O94822 1766 aa16.99■□□□□ 0.31
TRIM4-201ENST00000349062 RBM25P49756 843 aaKnown RBP16.99■□□□□ 0.31
TRIM4-201ENST00000349062 CWC27Q6UX04 472 aaKnown RBP16.99■□□□□ 0.31
TRIM4-201ENST00000349062 BRINP3Q76B58 766 aa16.99■□□□□ 0.31
TRIM4-201ENST00000349062 CHAMP1Q96JM3 812 aa16.99■□□□□ 0.31
TRIM4-201ENST00000349062 GOLGA6L3A6NEY3 463 aa16.98■□□□□ 0.31
TRIM4-201ENST00000349062 PHKG2P15735 406 aa16.98■□□□□ 0.31
TRIM4-201ENST00000349062 ERC2O15083 957 aa16.98■□□□□ 0.31
TRIM4-201ENST00000349062 L1TD1Q5T7N2 865 aaKnown RBP16.98■□□□□ 0.31
TRIM4-201ENST00000349062 USP26Q9BXU7 913 aa16.98■□□□□ 0.31
TRIM4-201ENST00000349062 SLAIN2Q9P270 581 aa16.98■□□□□ 0.31
TRIM4-201ENST00000349062 NWD1Q149M9 1564 aa16.98■□□□□ 0.31
TRIM4-201ENST00000349062 K7ELQ4 463 aaPredicted RBP16.97■□□□□ 0.31
TRIM4-201ENST00000349062 SLC52A2Q9HAB3 445 aa16.97■□□□□ 0.31
TRIM4-201ENST00000349062 NDUFB9Q9Y6M9 179 aa16.97■□□□□ 0.31
TRIM4-201ENST00000349062 NEXNQ0ZGT2 675 aa16.97■□□□□ 0.31
TRIM4-201ENST00000349062 REC8O95072 547 aa16.97■□□□□ 0.31
TRIM4-201ENST00000349062 KSR2Q6VAB6 950 aa16.97■□□□□ 0.31
TRIM4-201ENST00000349062 AACSQ86V21 672 aa16.97■□□□□ 0.31
TRIM4-201ENST00000349062 ZBTB3Q9H5J0 574 aa16.97■□□□□ 0.31
TRIM4-201ENST00000349062 KIF24Q5T7B8 1368 aa16.97■□□□□ 0.31
TRIM4-201ENST00000349062 RGPD1P0DJD0 1748 aa16.96■□□□□ 0.31
TRIM4-201ENST00000349062 DDX58O95786 925 aaKnown RBP16.96■□□□□ 0.31
TRIM4-201ENST00000349062 IFIT2P09913 472 aaKnown RBP16.96■□□□□ 0.31
TRIM4-201ENST00000349062 SSFA2P28290 1259 aa16.96■□□□□ 0.31
TRIM4-201ENST00000349062 UBE3BQ7Z3V4 1068 aa16.96■□□□□ 0.31
TRIM4-201ENST00000349062 SUCLG2Q96I99 432 aa16.96■□□□□ 0.31
TRIM4-201ENST00000349062 BICC1Q9H694 974 aaKnown RBP16.96■□□□□ 0.31
TRIM4-201ENST00000349062 CEMIPQ8WUJ3 1361 aa16.96■□□□□ 0.31
TRIM4-201ENST00000349062 ADCY9O60503 1353 aa16.95■□□□□ 0.3
TRIM4-201ENST00000349062 MCM4P33991 863 aa16.95■□□□□ 0.3
TRIM4-201ENST00000349062 LARP1Q6PKG0 1096 aaKnown RBP16.95■□□□□ 0.3
TRIM4-201ENST00000349062 ZGPATQ8N5A5 531 aaKnown RBP16.95■□□□□ 0.3
TRIM4-201ENST00000349062 IL25Q9H293 177 aa16.95■□□□□ 0.3
TRIM4-201ENST00000349062 PALD1Q9ULE6 856 aa16.95■□□□□ 0.3
TRIM4-201ENST00000349062 A1BGP04217 495 aa16.94■□□□□ 0.3
TRIM4-201ENST00000349062 VSIG10Q8N0Z9 540 aa16.94■□□□□ 0.3
TRIM4-201ENST00000349062 G3BP1Q13283 466 aaKnown RBP eCLIP16.94■□□□□ 0.3
TRIM4-201ENST00000349062 CLASRPQ8N2M8 674 aaKnown RBP16.94■□□□□ 0.3
TRIM4-201ENST00000349062 TNPO1Q92973 898 aaKnown RBP16.94■□□□□ 0.3
TRIM4-201ENST00000349062 KCNJ4P48050 445 aa16.94■□□□□ 0.3
TRIM4-201ENST00000349062 PKP1Q13835 747 aa16.94■□□□□ 0.3
TRIM4-201ENST00000349062 NFAT5O94916 1531 aa16.94■□□□□ 0.3
TRIM4-201ENST00000349062 XRCC6P12956 609 aaKnown RBP eCLIP16.93■□□□□ 0.3
TRIM4-201ENST00000349062 BOLA2Q9H3K6 86 aa16.93■□□□□ 0.3
TRIM4-201ENST00000349062 HYPKQ9NX55 129 aa16.93■□□□□ 0.3
TRIM4-201ENST00000349062 GRM8O00222 908 aa16.93■□□□□ 0.3
TRIM4-201ENST00000349062 ADAMTS2O95450 1211 aa16.92■□□□□ 0.3
TRIM4-201ENST00000349062 CPA1P15085 419 aa16.92■□□□□ 0.3
TRIM4-201ENST00000349062 ANKRD13DQ6ZTN6 518 aa16.92■□□□□ 0.3
TRIM4-201ENST00000349062 KIF1BPQ96EK5 621 aa16.92■□□□□ 0.3
TRIM4-201ENST00000349062 DDX21Q9NR30 783 aaKnown RBP eCLIP16.92■□□□□ 0.3
TRIM4-201ENST00000349062 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.92■□□□□ 0.3
TRIM4-201ENST00000349062 SSH3Q8TE77 659 aa16.92■□□□□ 0.3
TRIM4-201ENST00000349062 ST18O60284 1047 aa16.92■□□□□ 0.3
TRIM4-201ENST00000349062 ZCRB1Q8TBF4 217 aaKnown RBP16.92■□□□□ 0.3
TRIM4-201ENST00000349062 EDC3Q96F86 508 aaKnown RBP16.92■□□□□ 0.3
TRIM4-201ENST00000349062 ESYT1Q9BSJ8 1104 aa16.92■□□□□ 0.3
TRIM4-201ENST00000349062 IBTKQ9P2D0 1353 aaPredicted RBP16.92■□□□□ 0.3
TRIM4-201ENST00000349062 SPATA31A3Q5VYP0 1347 aa16.91■□□□□ 0.3
TRIM4-201ENST00000349062 TRAK2O60296 914 aa16.91■□□□□ 0.3
TRIM4-201ENST00000349062 CHMLP26374 656 aa16.91■□□□□ 0.3
TRIM4-201ENST00000349062 ADAMTSL3P82987 1691 aa16.91■□□□□ 0.3
TRIM4-201ENST00000349062 A0A087WZG4 1122 aa16.91■□□□□ 0.3
TRIM4-201ENST00000349062 NUTM2BA6NNL0 878 aaPredicted RBP16.91■□□□□ 0.3
TRIM4-201ENST00000349062 FAM177BA6PVY3 158 aa16.91■□□□□ 0.3
TRIM4-201ENST00000349062 NUTM2EB1AL46 878 aaPredicted RBP16.91■□□□□ 0.3
TRIM4-201ENST00000349062 RABEP1Q15276 862 aa16.91■□□□□ 0.3
TRIM4-201ENST00000349062 EPHA10Q5JZY3 1008 aa16.91■□□□□ 0.3
TRIM4-201ENST00000349062 NUTM2AQ8IVF1 878 aaPredicted RBP16.91■□□□□ 0.3
TRIM4-201ENST00000349062 DIAPH3Q9NSV4 1193 aa16.91■□□□□ 0.3
TRIM4-201ENST00000349062 MST1RQ04912 1400 aa16.9■□□□□ 0.3
TRIM4-201ENST00000349062 SNRPA1P09661 255 aaKnown RBP16.9■□□□□ 0.3
TRIM4-201ENST00000349062 KIAA1211Q6ZU35 1233 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms