RNA–Protein interactions for RNA: ENST00000346213.8

RAB5C-201, Transcript of RAB5C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB5C, Length 1,671 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB5C-201ENST00000346213 ADRA2BP18089 450 aa21.31■■□□□ 1
RAB5C-201ENST00000346213 PIP4K2AP48426 406 aaPredicted RBP21.31■■□□□ 1
RAB5C-201ENST00000346213 ADAMTS8Q9UP79 889 aa21.31■■□□□ 1
RAB5C-201ENST00000346213 KDM3BQ7LBC6 1761 aa21.31■■□□□ 1
RAB5C-201ENST00000346213 DDR1Q08345 913 aa21.31■■□□□ 1
RAB5C-201ENST00000346213 TTC5Q8N0Z6 440 aa21.31■■□□□ 1
RAB5C-201ENST00000346213 COL15A1P39059 1388 aa21.3■■□□□ 1
RAB5C-201ENST00000346213 HTATSF1O43719 755 aaKnown RBP21.3■■□□□ 1
RAB5C-201ENST00000346213 USP16Q9Y5T5 823 aa21.3■■□□□ 1
RAB5C-201ENST00000346213 A1BGP04217 495 aa21.29■■□□□ 1
RAB5C-201ENST00000346213 YBX3P16989 372 aaKnown RBP eCLIP21.29■■□□□ 17e-8■■■□□ 18
RAB5C-201ENST00000346213 RTF1Q92541 710 aaKnown RBP21.29■■□□□ 1
RAB5C-201ENST00000346213 ANP32CO43423 234 aa21.28■■□□□ 1
RAB5C-201ENST00000346213 CANXP27824 592 aaKnown RBP21.28■■□□□ 1
RAB5C-201ENST00000346213 RFC4P35249 363 aa21.28■■□□□ 1
RAB5C-201ENST00000346213 USPL1Q5W0Q7 1092 aa21.28■■□□□ 1
RAB5C-201ENST00000346213 TMPOP42166 694 aaKnown RBP21.28■■□□□ 1
RAB5C-201ENST00000346213 FMNL2Q96PY5 1086 aa21.28■■□□□ 1
RAB5C-201ENST00000346213 WWC3Q9ULE0 1092 aa21.28■■□□□ 1
RAB5C-201ENST00000346213 C10orf71Q711Q0 1435 aa21.27■■□□□ 1
RAB5C-201ENST00000346213 CENPBP07199 599 aaPredicted RBP21.27■■□□□ 1
RAB5C-201ENST00000346213 EIF5P55010 431 aaKnown RBP21.27■■□□□ 1
RAB5C-201ENST00000346213 HMGB2P26583 209 aaKnown RBP21.26■□□□□ 0.99
RAB5C-201ENST00000346213 TAF7Q15545 349 aaPredicted RBP21.26■□□□□ 0.99
RAB5C-201ENST00000346213 MAPK8IP3Q9UPT6 1336 aa21.26■□□□□ 0.99
RAB5C-201ENST00000346213 PXDNLA1KZ92 1463 aa21.25■□□□□ 0.99
RAB5C-201ENST00000346213 TRIM35Q9UPQ4 493 aa21.25■□□□□ 0.99
RAB5C-201ENST00000346213 KIF13BQ9NQT8 1826 aa21.25■□□□□ 0.99
RAB5C-201ENST00000346213 RIPK4P57078 832 aa21.24■□□□□ 0.99
RAB5C-201ENST00000346213 SCN7AQ01118 1682 aa21.24■□□□□ 0.99
RAB5C-201ENST00000346213 NBPF26B4DH59 902 aa21.24■□□□□ 0.99
RAB5C-201ENST00000346213 NBPF10Q6P3W6 841 aaKnown RBP21.24■□□□□ 0.99
RAB5C-201ENST00000346213 NBPF15Q8N660 670 aa21.24■□□□□ 0.99
RAB5C-201ENST00000346213 CD2APQ9Y5K6 639 aa21.24■□□□□ 0.99
RAB5C-201ENST00000346213 CCER2I3L3R5 266 aa21.23■□□□□ 0.99
RAB5C-201ENST00000346213 TM4SF1P30408 202 aa21.23■□□□□ 0.99
RAB5C-201ENST00000346213 NLGN1Q8N2Q7 840 aa21.23■□□□□ 0.99
RAB5C-201ENST00000346213 SENP3-EIF4A1A0A087X0R7 540 aa21.22■□□□□ 0.99
RAB5C-201ENST00000346213 POLRMTO00411 1230 aaKnown RBP21.22■□□□□ 0.99
RAB5C-201ENST00000346213 NARFQ9UHQ1 456 aa21.22■□□□□ 0.99
RAB5C-201ENST00000346213 EIF4A1P60842 406 aaKnown RBP21.21■□□□□ 0.99
RAB5C-201ENST00000346213 NEUROD2Q15784 382 aa21.21■□□□□ 0.99
RAB5C-201ENST00000346213 STARD3NLO95772 234 aa21.21■□□□□ 0.99
RAB5C-201ENST00000346213 NFIXQ14938 502 aa21.21■□□□□ 0.99
RAB5C-201ENST00000346213 RUNDC1Q96C34 613 aa21.21■□□□□ 0.99
RAB5C-201ENST00000346213 TBC1D2BQ9UPU7 963 aa21.21■□□□□ 0.99
RAB5C-201ENST00000346213 LAMB4A4D0S4 1761 aa21.2■□□□□ 0.98
RAB5C-201ENST00000346213 N4BP2Q86UW6 1770 aaPredicted RBP21.2■□□□□ 0.98
RAB5C-201ENST00000346213 WDR43Q15061 677 aaKnown RBP eCLIP21.2■□□□□ 0.98
RAB5C-201ENST00000346213 YTHDC1Q96MU7 727 aaKnown RBP21.2■□□□□ 0.98
RAB5C-201ENST00000346213 CARMIL3Q8ND23 1372 aa21.2■□□□□ 0.98
RAB5C-201ENST00000346213 NRXN2Q9P2S2 1712 aa21.19■□□□□ 0.98
RAB5C-201ENST00000346213 BCORQ6W2J9 1755 aa21.19■□□□□ 0.98
RAB5C-201ENST00000346213 SNRPA1P09661 255 aaKnown RBP21.18■□□□□ 0.98
RAB5C-201ENST00000346213 KRT24Q2M2I5 525 aa21.18■□□□□ 0.98
RAB5C-201ENST00000346213 ZNF330Q9Y3S2 320 aaPredicted RBP21.18■□□□□ 0.98
RAB5C-201ENST00000346213 GIGYF1O75420 1035 aaPredicted RBP21.18■□□□□ 0.98
RAB5C-201ENST00000346213 CAMTA2O94983 1202 aa21.18■□□□□ 0.98
RAB5C-201ENST00000346213 NEFMP07197 916 aa21.17■□□□□ 0.98
RAB5C-201ENST00000346213 KCNA3P22001 575 aa21.17■□□□□ 0.98
RAB5C-201ENST00000346213 IL6STP40189 918 aaPredicted RBP21.17■□□□□ 0.98
RAB5C-201ENST00000346213 GPR162Q16538 588 aa21.17■□□□□ 0.98
RAB5C-201ENST00000346213 TBC1D9BQ66K14 1250 aa21.17■□□□□ 0.98
RAB5C-201ENST00000346213 TEX13AQ9BXU3 409 aaPredicted RBP21.17■□□□□ 0.98
RAB5C-201ENST00000346213 AFDNP55196 1824 aaKnown RBP21.17■□□□□ 0.98
RAB5C-201ENST00000346213 A0A0G2JLW4 131 aa21.16■□□□□ 0.98
RAB5C-201ENST00000346213 ZPR1O75312 459 aa21.16■□□□□ 0.98
RAB5C-201ENST00000346213 PNNQ9H307 717 aaKnown RBP21.16■□□□□ 0.98
RAB5C-201ENST00000346213 APAF1O14727 1248 aa21.15■□□□□ 0.98
RAB5C-201ENST00000346213 DPEP1P16444 411 aa21.15■□□□□ 0.98
RAB5C-201ENST00000346213 PARP3Q9Y6F1 533 aa21.15■□□□□ 0.98
RAB5C-201ENST00000346213 YY1P25490 414 aa21.14■□□□□ 0.97
RAB5C-201ENST00000346213 BICDL1Q6ZP65 573 aa21.14■□□□□ 0.97
RAB5C-201ENST00000346213 LRP10Q7Z4F1 713 aa21.13■□□□□ 0.97
RAB5C-201ENST00000346213 TSPYL4Q9UJ04 414 aa21.13■□□□□ 0.97
RAB5C-201ENST00000346213 BRCA1P38398 1863 aaKnown RBP21.13■□□□□ 0.97
RAB5C-201ENST00000346213 CHRNA5P30532 468 aa21.12■□□□□ 0.97
RAB5C-201ENST00000346213 CCDC24Q8N4L8 307 aa21.12■□□□□ 0.97
RAB5C-201ENST00000346213 PNISRQ8TF01 805 aaKnown RBP21.12■□□□□ 0.97
RAB5C-201ENST00000346213 DZIP3Q86Y13 1208 aaKnown RBP21.12■□□□□ 0.97
RAB5C-201ENST00000346213 CHL1O00533 1208 aa21.11■□□□□ 0.97
RAB5C-201ENST00000346213 PROSER3Q2NL68 480 aa21.11■□□□□ 0.97
RAB5C-201ENST00000346213 SERPINB2P05120 415 aa21.1■□□□□ 0.97
RAB5C-201ENST00000346213 PDIA6Q15084 440 aa21.1■□□□□ 0.97
RAB5C-201ENST00000346213 HLFQ16534 295 aa21.1■□□□□ 0.97
RAB5C-201ENST00000346213 ANKRD31Q8N7Z5 1873 aa21.1■□□□□ 0.97
RAB5C-201ENST00000346213 ANXA1P04083 346 aa21.09■□□□□ 0.97
RAB5C-201ENST00000346213 TTLL7Q6ZT98 887 aa21.09■□□□□ 0.97
RAB5C-201ENST00000346213 A0A087WZG4 1122 aa21.08■□□□□ 0.96
RAB5C-201ENST00000346213 COL11A2P13942 1736 aaPredicted RBP21.07■□□□□ 0.96
RAB5C-201ENST00000346213 ZNF853P0CG23 659 aa21.07■□□□□ 0.96
RAB5C-201ENST00000346213 TGFB2P61812 414 aa21.07■□□□□ 0.96
RAB5C-201ENST00000346213 LMOD3Q0VAK6 560 aa21.07■□□□□ 0.96
RAB5C-201ENST00000346213 MRS2Q9HD23 443 aa21.07■□□□□ 0.96
RAB5C-201ENST00000346213 DCAF8L1A6NGE4 600 aa21.06■□□□□ 0.96
RAB5C-201ENST00000346213 NGEFQ8N5V2 710 aa21.06■□□□□ 0.96
RAB5C-201ENST00000346213 LAS1LQ9Y4W2 734 aaKnown RBP21.06■□□□□ 0.96
RAB5C-201ENST00000346213 MYL6BP14649 208 aa21.05■□□□□ 0.96
RAB5C-201ENST00000346213 PRR5LQ6MZQ0 368 aa21.05■□□□□ 0.96
RAB5C-201ENST00000346213 NECTIN2Q92692 538 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms