RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 MYL6BP14649 208 aa12.68□□□□□ -0.38
LIMA1-201ENST00000341247 DDIT3P35638 169 aa12.68□□□□□ -0.38
LIMA1-201ENST00000341247 SOS1Q07889 1333 aaPredicted RBP12.68□□□□□ -0.38
LIMA1-201ENST00000341247 IBTKQ9P2D0 1353 aaPredicted RBP12.68□□□□□ -0.38
LIMA1-201ENST00000341247 AMOTQ4VCS5 1084 aa12.67□□□□□ -0.38
LIMA1-201ENST00000341247 BEND3Q5T5X7 828 aa12.67□□□□□ -0.38
LIMA1-201ENST00000341247 ZGPATQ8N5A5 531 aaKnown RBP12.67□□□□□ -0.38
LIMA1-201ENST00000341247 PKP1Q13835 747 aa12.67□□□□□ -0.38
LIMA1-201ENST00000341247 RAPGEF4Q8WZA2 1011 aa12.67□□□□□ -0.38
LIMA1-201ENST00000341247 BABAM1Q9NWV8 329 aa12.67□□□□□ -0.38
LIMA1-201ENST00000341247 PA2G4Q9UQ80 394 aaKnown RBP12.67□□□□□ -0.38
LIMA1-201ENST00000341247 CRYBG1Q9Y4K1 1723 aa12.67□□□□□ -0.38
LIMA1-201ENST00000341247 NEK4P51957 841 aa12.67□□□□□ -0.38
LIMA1-201ENST00000341247 ERBB3P21860 1342 aa12.67□□□□□ -0.38
LIMA1-201ENST00000341247 GIGYF1O75420 1035 aaPredicted RBP12.66□□□□□ -0.38
LIMA1-201ENST00000341247 RHPN1Q8TCX5 695 aa12.66□□□□□ -0.38
LIMA1-201ENST00000341247 JARID2Q92833 1246 aaPredicted RBP12.66□□□□□ -0.38
LIMA1-201ENST00000341247 CAMTA1Q9Y6Y1 1673 aa12.66□□□□□ -0.38
LIMA1-201ENST00000341247 RAB3GAP1Q15042 981 aa12.66□□□□□ -0.38
LIMA1-201ENST00000341247 CHAMP1Q96JM3 812 aa12.66□□□□□ -0.38
LIMA1-201ENST00000341247 IL25Q9H293 177 aa12.66□□□□□ -0.38
LIMA1-201ENST00000341247 PALD1Q9ULE6 856 aa12.66□□□□□ -0.38
LIMA1-201ENST00000341247 SSH3Q8TE77 659 aa12.66□□□□□ -0.38
LIMA1-201ENST00000341247 ESYT1Q9BSJ8 1104 aa12.66□□□□□ -0.38
LIMA1-201ENST00000341247 OSBPL3Q9H4L5 887 aa12.66□□□□□ -0.38
LIMA1-201ENST00000341247 DBF4Q9UBU7 674 aaPredicted RBP12.66□□□□□ -0.38
LIMA1-201ENST00000341247 NCOA3Q9Y6Q9 1424 aa12.66□□□□□ -0.38
LIMA1-201ENST00000341247 COL18A1P39060 1754 aa12.66□□□□□ -0.38
LIMA1-201ENST00000341247 NFATC2IPQ8NCF5 419 aa12.65□□□□□ -0.38
LIMA1-201ENST00000341247 GBP4Q96PP9 640 aa12.65□□□□□ -0.38
LIMA1-201ENST00000341247 DDX11L8A8MPP1 907 aa12.65□□□□□ -0.38
LIMA1-201ENST00000341247 ST18O60284 1047 aa12.65□□□□□ -0.38
LIMA1-201ENST00000341247 CHMLP26374 656 aa12.65□□□□□ -0.38
LIMA1-201ENST00000341247 UPF3BQ9BZI7 483 aaKnown RBP12.65□□□□□ -0.38
LIMA1-201ENST00000341247 MEGF6O75095 1541 aa12.65□□□□□ -0.38
LIMA1-201ENST00000341247 ADCY9O60503 1353 aa12.65□□□□□ -0.38
LIMA1-201ENST00000341247 SALL3Q9BXA9 1300 aa12.64□□□□□ -0.39
LIMA1-201ENST00000341247 GOLGA6L3A6NEY3 463 aa12.64□□□□□ -0.39
LIMA1-201ENST00000341247 PANK2Q9BZ23 570 aa12.64□□□□□ -0.39
LIMA1-201ENST00000341247 AK9Q5TCS8 1911 aa12.64□□□□□ -0.39
LIMA1-201ENST00000341247 SIPA1L3O60292 1781 aaPredicted RBP12.64□□□□□ -0.39
LIMA1-201ENST00000341247 SIL1Q9H173 461 aa12.63□□□□□ -0.39
LIMA1-201ENST00000341247 CIZ1Q9ULV3 898 aaPredicted RBP12.63□□□□□ -0.39
LIMA1-201ENST00000341247 KDM6AO15550 1401 aaPredicted RBP12.63□□□□□ -0.39
LIMA1-201ENST00000341247 NCLP19338 710 aaKnown RBP12.63□□□□□ -0.39
LIMA1-201ENST00000341247 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.63□□□□□ -0.39
LIMA1-201ENST00000341247 KDM4FA0A1W2PPD8 638 aa12.63□□□□□ -0.39
LIMA1-201ENST00000341247 LARP6Q9BRS8 491 aaKnown RBP12.63□□□□□ -0.39
LIMA1-201ENST00000341247 TUBGCP6Q96RT7 1819 aa12.62□□□□□ -0.39
LIMA1-201ENST00000341247 FOXD4L6Q3SYB3 417 aaPredicted RBP12.62□□□□□ -0.39
LIMA1-201ENST00000341247 MCTP1Q6DN14 999 aa12.62□□□□□ -0.39
LIMA1-201ENST00000341247 FOXD4L3Q6VB84 417 aaPredicted RBP12.62□□□□□ -0.39
LIMA1-201ENST00000341247 RIC3Q7Z5B4 369 aa12.62□□□□□ -0.39
LIMA1-201ENST00000341247 STRCQ7RTU9 1775 aa12.62□□□□□ -0.39
LIMA1-201ENST00000341247 N4BP2Q86UW6 1770 aaPredicted RBP12.62□□□□□ -0.39
LIMA1-201ENST00000341247 DTNBO60941 627 aa12.62□□□□□ -0.39
LIMA1-201ENST00000341247 KLHDC4Q8TBB5 520 aa12.62□□□□□ -0.39
LIMA1-201ENST00000341247 TATP17735 454 aaPredicted RBP12.62□□□□□ -0.39
LIMA1-201ENST00000341247 POLA2Q14181 598 aa12.62□□□□□ -0.39
LIMA1-201ENST00000341247 KSR2Q6VAB6 950 aa12.62□□□□□ -0.39
LIMA1-201ENST00000341247 KIF1BPQ96EK5 621 aa12.62□□□□□ -0.39
LIMA1-201ENST00000341247 HOXB7P09629 217 aa12.61□□□□□ -0.39
LIMA1-201ENST00000341247 XRCC6P12956 609 aaKnown RBP eCLIP12.61□□□□□ -0.39
LIMA1-201ENST00000341247 CWC27Q6UX04 472 aaKnown RBP12.61□□□□□ -0.39
LIMA1-201ENST00000341247 C5P01031 1676 aa12.61□□□□□ -0.39
LIMA1-201ENST00000341247 KIF1AQ12756 1690 aa12.61□□□□□ -0.39
LIMA1-201ENST00000341247 ZNF790Q6PG37 636 aa12.61□□□□□ -0.39
LIMA1-201ENST00000341247 CACNA1FO60840 1977 aa12.61□□□□□ -0.39
LIMA1-201ENST00000341247 HEG1Q9ULI3 1381 aa12.61□□□□□ -0.39
LIMA1-201ENST00000341247 ZNF496Q96IT1 587 aaPredicted RBP12.61□□□□□ -0.39
LIMA1-201ENST00000341247 SPG7Q9UQ90 795 aa12.61□□□□□ -0.39
LIMA1-201ENST00000341247 ZNF335Q9H4Z2 1342 aaPredicted RBP12.6□□□□□ -0.39
LIMA1-201ENST00000341247 EIF5BO60841 1220 aaKnown RBP12.6□□□□□ -0.39
LIMA1-201ENST00000341247 SUCLG2Q96I99 432 aa12.6□□□□□ -0.39
LIMA1-201ENST00000341247 RAB11FIP3O75154 756 aa12.6□□□□□ -0.39
LIMA1-201ENST00000341247 BAG4O95429 457 aaKnown RBP12.6□□□□□ -0.39
LIMA1-201ENST00000341247 MCCP23508 829 aa12.6□□□□□ -0.39
LIMA1-201ENST00000341247 PDIA6Q15084 440 aa12.6□□□□□ -0.39
LIMA1-201ENST00000341247 TPRNQ4KMQ1 711 aa12.6□□□□□ -0.39
LIMA1-201ENST00000341247 STAP2Q9UGK3 403 aa12.6□□□□□ -0.39
LIMA1-201ENST00000341247 ADAMTS7Q9UKP4 1686 aa12.6□□□□□ -0.39
LIMA1-201ENST00000341247 L1TD1Q5T7N2 865 aaKnown RBP12.6□□□□□ -0.39
LIMA1-201ENST00000341247 PI4K2BQ8TCG2 481 aa12.6□□□□□ -0.39
LIMA1-201ENST00000341247 DDX54Q8TDD1 881 aaKnown RBP12.6□□□□□ -0.39
LIMA1-201ENST00000341247 XAGE3Q8WTP9 111 aa12.6□□□□□ -0.39
LIMA1-201ENST00000341247 USP16Q9Y5T5 823 aa12.6□□□□□ -0.39
LIMA1-201ENST00000341247 GOLGB1Q14789 3259 aaKnown RBP12.6□□□□□ -0.39
LIMA1-201ENST00000341247 CYP27B1O15528 508 aa12.59□□□□□ -0.39
LIMA1-201ENST00000341247 BRINP3Q76B58 766 aa12.59□□□□□ -0.39
LIMA1-201ENST00000341247 COPS6Q7L5N1 327 aa12.59□□□□□ -0.39
LIMA1-201ENST00000341247 TMX3Q96JJ7 454 aa12.59□□□□□ -0.39
LIMA1-201ENST00000341247 BICC1Q9H694 974 aaKnown RBP12.59□□□□□ -0.39
LIMA1-201ENST00000341247 DDX49Q9Y6V7 483 aaKnown RBP12.59□□□□□ -0.39
LIMA1-201ENST00000341247 NPHP3Q7Z494 1330 aa12.59□□□□□ -0.39
LIMA1-201ENST00000341247 MYD88Q99836 296 aa12.59□□□□□ -0.39
LIMA1-201ENST00000341247 CCDC8Q9H0W5 538 aaPredicted RBP12.59□□□□□ -0.39
LIMA1-201ENST00000341247 PHKG2P15735 406 aa12.59□□□□□ -0.39
LIMA1-201ENST00000341247 AACSQ86V21 672 aa12.59□□□□□ -0.39
LIMA1-201ENST00000341247 CLASRPQ8N2M8 674 aaKnown RBP12.59□□□□□ -0.39
LIMA1-201ENST00000341247 SLC52A2Q9HAB3 445 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms