RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 PDRG1Q9NUG6 133 aa9.87□□□□□ -0.83
HPS4-201ENST00000336873 CFAP74Q9C0B2 1584 aa9.86□□□□□ -0.83
HPS4-201ENST00000336873 RAB11FIP3O75154 756 aa9.86□□□□□ -0.83
HPS4-201ENST00000336873 DDX58O95786 925 aaKnown RBP9.86□□□□□ -0.83
HPS4-201ENST00000336873 PTMSP20962 102 aa9.86□□□□□ -0.83
HPS4-201ENST00000336873 CCT2P78371 535 aaKnown RBP9.86□□□□□ -0.83
HPS4-201ENST00000336873 TRPM2O94759 1503 aa9.86□□□□□ -0.83
HPS4-201ENST00000336873 NBPF6Q5VWK0 638 aa9.86□□□□□ -0.83
HPS4-201ENST00000336873 DDX46Q7L014 1031 aaKnown RBP9.86□□□□□ -0.83
HPS4-201ENST00000336873 NBPF4Q96M43 638 aa9.86□□□□□ -0.83
HPS4-201ENST00000336873 TSPY26PQ9H489 355 aa9.86□□□□□ -0.83
HPS4-201ENST00000336873 ABCA9Q8IUA7 1624 aa9.86□□□□□ -0.83
HPS4-201ENST00000336873 CCDC82Q8N4S0 544 aa9.86□□□□□ -0.83
HPS4-201ENST00000336873 TSC1Q92574 1164 aa9.86□□□□□ -0.83
HPS4-201ENST00000336873 KIF1BPQ96EK5 621 aa9.86□□□□□ -0.83
HPS4-201ENST00000336873 TTC12Q9H892 705 aaPredicted RBP9.86□□□□□ -0.83
HPS4-201ENST00000336873 MTMR7Q9Y216 660 aa9.86□□□□□ -0.83
HPS4-201ENST00000336873 CYP46A1Q9Y6A2 500 aa9.86□□□□□ -0.83
HPS4-201ENST00000336873 NFATC2IPQ8NCF5 419 aa9.85□□□□□ -0.83
HPS4-201ENST00000336873 CHMLP26374 656 aa9.85□□□□□ -0.83
HPS4-201ENST00000336873 CCDC173Q0VFZ6 552 aa9.85□□□□□ -0.83
HPS4-201ENST00000336873 USP48Q86UV5 1035 aa9.85□□□□□ -0.83
HPS4-201ENST00000336873 ABCA6Q8N139 1617 aa9.85□□□□□ -0.83
HPS4-201ENST00000336873 HAND2P61296 217 aa9.85□□□□□ -0.83
HPS4-201ENST00000336873 DNM1Q05193 864 aaKnown RBP9.85□□□□□ -0.83
HPS4-201ENST00000336873 KLHL40Q2TBA0 621 aa9.85□□□□□ -0.83
HPS4-201ENST00000336873 AK9Q5TCS8 1911 aa9.85□□□□□ -0.83
HPS4-201ENST00000336873 HECW2Q9P2P5 1572 aa9.84□□□□□ -0.83
HPS4-201ENST00000336873 BECN2A8MW95 431 aa9.84□□□□□ -0.83
HPS4-201ENST00000336873 HOXC9P31274 260 aa9.84□□□□□ -0.83
HPS4-201ENST00000336873 SNX21Q969T3 373 aa9.84□□□□□ -0.83
HPS4-201ENST00000336873 USP44Q9H0E7 712 aa9.84□□□□□ -0.83
HPS4-201ENST00000336873 CWC22Q9HCG8 908 aaKnown RBP9.84□□□□□ -0.83
HPS4-201ENST00000336873 PTPRCP08575 1304 aa9.84□□□□□ -0.83
HPS4-201ENST00000336873 TSPOAP1O95153 1857 aa9.84□□□□□ -0.83
HPS4-201ENST00000336873 GJB2P29033 226 aa9.84□□□□□ -0.83
HPS4-201ENST00000336873 ATP8B2P98198 1209 aa9.84□□□□□ -0.83
HPS4-201ENST00000336873 PROSER3Q2NL68 480 aa9.84□□□□□ -0.83
HPS4-201ENST00000336873 ISM2Q6H9L7 571 aa9.84□□□□□ -0.83
HPS4-201ENST00000336873 COPS6Q7L5N1 327 aa9.84□□□□□ -0.83
HPS4-201ENST00000336873 PRDM10Q9NQV6 1147 aa9.84□□□□□ -0.83
HPS4-201ENST00000336873 TMEM63CQ9P1W3 806 aa9.84□□□□□ -0.83
HPS4-201ENST00000336873 ATF3P18847 181 aa9.84□□□□□ -0.83
HPS4-201ENST00000336873 CHAF1AQ13111 956 aaPredicted RBP9.84□□□□□ -0.83
HPS4-201ENST00000336873 FAM227BQ96M60 508 aa9.84□□□□□ -0.83
HPS4-201ENST00000336873 TRIM5Q9C035 493 aa9.84□□□□□ -0.83
HPS4-201ENST00000336873 AK2P54819 239 aa9.83□□□□□ -0.84
HPS4-201ENST00000336873 BLOC1S2Q6QNY1 142 aa9.83□□□□□ -0.84
HPS4-201ENST00000336873 CCDC129Q6ZRS4 1044 aa9.83□□□□□ -0.84
HPS4-201ENST00000336873 TOM1L2Q6ZVM7 507 aa9.83□□□□□ -0.84
HPS4-201ENST00000336873 ZSCAN30Q86W11 494 aa9.83□□□□□ -0.84
HPS4-201ENST00000336873 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.83□□□□□ -0.84
HPS4-201ENST00000336873 PHF14O94880 888 aa9.83□□□□□ -0.84
HPS4-201ENST00000336873 ABCC4O15439 1325 aa9.83□□□□□ -0.84
HPS4-201ENST00000336873 A0A087WZG4 1122 aa9.83□□□□□ -0.84
HPS4-201ENST00000336873 ANKRD24Q8TF21 1146 aa9.83□□□□□ -0.84
HPS4-201ENST00000336873 KIF2CQ99661 725 aa9.83□□□□□ -0.84
HPS4-201ENST00000336873 RTL1A6NKG5 1358 aa9.82□□□□□ -0.84
HPS4-201ENST00000336873 MROH1Q8NDA8 1641 aa9.82□□□□□ -0.84
HPS4-201ENST00000336873 GPTP24298 496 aa9.82□□□□□ -0.84
HPS4-201ENST00000336873 CABP4P57796 275 aa9.82□□□□□ -0.84
HPS4-201ENST00000336873 FILIP1Q7Z7B0 1213 aa9.82□□□□□ -0.84
HPS4-201ENST00000336873 ERCC4Q92889 916 aaPredicted RBP9.82□□□□□ -0.84
HPS4-201ENST00000336873 ATP6V1DQ9Y5K8 247 aa9.82□□□□□ -0.84
HPS4-201ENST00000336873 WDR33Q9C0J8 1336 aaKnown RBP9.82□□□□□ -0.84
HPS4-201ENST00000336873 UQCRHLA0A096LP55 91 aa9.82□□□□□ -0.84
HPS4-201ENST00000336873 DEPDC5O75140 1603 aa9.82□□□□□ -0.84
HPS4-201ENST00000336873 UQCRHP07919 91 aa9.82□□□□□ -0.84
HPS4-201ENST00000336873 SOS1Q07889 1333 aaPredicted RBP9.82□□□□□ -0.84
HPS4-201ENST00000336873 HSP90AB4PQ58FF6 505 aa9.82□□□□□ -0.84
HPS4-201ENST00000336873 RRP12Q5JTH9 1297 aaKnown RBP9.82□□□□□ -0.84
HPS4-201ENST00000336873 XAGE3Q8WTP9 111 aa9.82□□□□□ -0.84
HPS4-201ENST00000336873 SBNO2Q9Y2G9 1366 aa9.82□□□□□ -0.84
HPS4-201ENST00000336873 CPLX1O14810 134 aa9.81□□□□□ -0.84
HPS4-201ENST00000336873 MBD3O95983 291 aa9.81□□□□□ -0.84
HPS4-201ENST00000336873 RNF20Q5VTR2 975 aa9.81□□□□□ -0.84
HPS4-201ENST00000336873 RASEFQ8IZ41 740 aa9.81□□□□□ -0.84
HPS4-201ENST00000336873 ROBO2Q9HCK4 1378 aa9.81□□□□□ -0.84
HPS4-201ENST00000336873 GOLGA6L19H0YKK7 550 aa9.81□□□□□ -0.84
HPS4-201ENST00000336873 STX6O43752 255 aa9.81□□□□□ -0.84
HPS4-201ENST00000336873 SDF4Q9BRK5 362 aa9.81□□□□□ -0.84
HPS4-201ENST00000336873 DBF4Q9UBU7 674 aaPredicted RBP9.81□□□□□ -0.84
HPS4-201ENST00000336873 ISY1Q9ULR0 285 aaKnown RBP9.81□□□□□ -0.84
HPS4-201ENST00000336873 GLRX3O76003 335 aaKnown RBP9.81□□□□□ -0.84
HPS4-201ENST00000336873 SLFNL1Q499Z3 407 aa9.81□□□□□ -0.84
HPS4-201ENST00000336873 CCDC144CPQ8IYA2 1237 aa9.81□□□□□ -0.84
HPS4-201ENST00000336873 LMBRD1Q9NUN5 540 aa9.81□□□□□ -0.84
HPS4-201ENST00000336873 FSD2A1L4K1 749 aa9.8□□□□□ -0.84
HPS4-201ENST00000336873 GOLIM4O00461 696 aa9.8□□□□□ -0.84
HPS4-201ENST00000336873 TIMM10P62072 90 aa9.8□□□□□ -0.84
HPS4-201ENST00000336873 GPT2Q8TD30 523 aa9.8□□□□□ -0.84
HPS4-201ENST00000336873 PIBF1Q8WXW3 757 aa9.8□□□□□ -0.84
HPS4-201ENST00000336873 ECHDC1Q9NTX5 307 aa9.8□□□□□ -0.84
HPS4-201ENST00000336873 A0A087WWV3 80 aa9.8□□□□□ -0.84
HPS4-201ENST00000336873 CHGBP05060 677 aa9.8□□□□□ -0.84
HPS4-201ENST00000336873 LIMCH1Q9UPQ0 1083 aa9.8□□□□□ -0.84
HPS4-201ENST00000336873 ABCC3O15438 1527 aa9.8□□□□□ -0.84
HPS4-201ENST00000336873 GCP02774 474 aa9.8□□□□□ -0.84
HPS4-201ENST00000336873 ZNF853P0CG23 659 aa9.8□□□□□ -0.84
HPS4-201ENST00000336873 TATP17735 454 aaPredicted RBP9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms