RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 BTBD11A6QL63 1104 aa11.99□□□□□ -0.49
CCDC88A-202ENST00000336838 ZNF530Q6P9A1 599 aaPredicted RBP11.99□□□□□ -0.49
CCDC88A-202ENST00000336838 POLR3GO15318 223 aaPredicted RBP11.99□□□□□ -0.49
CCDC88A-202ENST00000336838 BMP15O95972 392 aa11.99□□□□□ -0.49
CCDC88A-202ENST00000336838 CLIP2Q9UDT6 1046 aa11.99□□□□□ -0.49
CCDC88A-202ENST00000336838 PLCH2O75038 1416 aa11.99□□□□□ -0.49
CCDC88A-202ENST00000336838 TAF7Q15545 349 aaPredicted RBP11.99□□□□□ -0.49
CCDC88A-202ENST00000336838 STX6O43752 255 aa11.99□□□□□ -0.49
CCDC88A-202ENST00000336838 CD109Q6YHK3 1445 aa11.99□□□□□ -0.49
CCDC88A-202ENST00000336838 EIF4G3O43432 1585 aaKnown RBP11.98□□□□□ -0.49
CCDC88A-202ENST00000336838 CWC27Q6UX04 472 aaKnown RBP11.98□□□□□ -0.49
CCDC88A-202ENST00000336838 VPS36Q86VN1 386 aa11.98□□□□□ -0.49
CCDC88A-202ENST00000336838 PPP1R12BO60237 982 aaPredicted RBP11.98□□□□□ -0.49
CCDC88A-202ENST00000336838 SHTN1A0MZ66 631 aa11.98□□□□□ -0.49
CCDC88A-202ENST00000336838 ABCC10Q5T3U5 1492 aa11.98□□□□□ -0.49
CCDC88A-202ENST00000336838 UBAC1Q9BSL1 405 aa11.98□□□□□ -0.49
CCDC88A-202ENST00000336838 KIF20AO95235 890 aa11.98□□□□□ -0.49
CCDC88A-202ENST00000336838 FAM69CQ0P6D2 419 aa11.98□□□□□ -0.49
CCDC88A-202ENST00000336838 C14orf93Q9H972 538 aaKnown RBP11.98□□□□□ -0.49
CCDC88A-202ENST00000336838 CCDC9Q9Y3X0 531 aaKnown RBP11.98□□□□□ -0.49
CCDC88A-202ENST00000336838 NOS1P29475 1434 aa11.97□□□□□ -0.49
CCDC88A-202ENST00000336838 UBE2Q2Q8WVN8 375 aa11.97□□□□□ -0.49
CCDC88A-202ENST00000336838 RNF41Q9H4P4 317 aaPredicted RBP11.97□□□□□ -0.49
CCDC88A-202ENST00000336838 AIMP1Q12904 312 aaKnown RBP11.97□□□□□ -0.49
CCDC88A-202ENST00000336838 CEP126Q9P2H0 1117 aa11.97□□□□□ -0.49
CCDC88A-202ENST00000336838 CASQ1P31415 396 aa11.97□□□□□ -0.49
CCDC88A-202ENST00000336838 CFAP100Q494V2 611 aa11.97□□□□□ -0.49
CCDC88A-202ENST00000336838 RAB34Q9BZG1 259 aa11.97□□□□□ -0.49
CCDC88A-202ENST00000336838 DENND4BO75064 1496 aaPredicted RBP11.97□□□□□ -0.49
CCDC88A-202ENST00000336838 TTC37Q6PGP7 1564 aa11.97□□□□□ -0.49
CCDC88A-202ENST00000336838 RNF123Q5XPI4 1314 aa11.96□□□□□ -0.49
CCDC88A-202ENST00000336838 CROCC2H7BZ55 1655 aa11.96□□□□□ -0.49
CCDC88A-202ENST00000336838 GOLGA6L10A0A0M3HER8 536 aa11.96□□□□□ -0.49
CCDC88A-202ENST00000336838 TTF1Q15361 905 aaPredicted RBP11.96□□□□□ -0.49
CCDC88A-202ENST00000336838 TTC21AQ8NDW8 1320 aa11.96□□□□□ -0.49
CCDC88A-202ENST00000336838 CTAGE1Q96RT6 745 aa11.96□□□□□ -0.5
CCDC88A-202ENST00000336838 CNNM1Q9NRU3 951 aa11.96□□□□□ -0.5
CCDC88A-202ENST00000336838 AOX1Q06278 1338 aa11.96□□□□□ -0.5
CCDC88A-202ENST00000336838 KIF24Q5T7B8 1368 aa11.96□□□□□ -0.5
CCDC88A-202ENST00000336838 IVLP07476 585 aa11.96□□□□□ -0.5
CCDC88A-202ENST00000336838 FAM114A1Q8IWE2 563 aa11.96□□□□□ -0.5
CCDC88A-202ENST00000336838 DBF4Q9UBU7 674 aaPredicted RBP11.96□□□□□ -0.5
CCDC88A-202ENST00000336838 ZSCAN23Q3MJ62 389 aa11.96□□□□□ -0.5
CCDC88A-202ENST00000336838 TOP1P11387 765 aaKnown RBP11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 FBXW7Q969H0 707 aa11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 RAB3GAP1Q15042 981 aa11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 TTC41PQ6P2S7 1318 aa11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 PZPP20742 1482 aa11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 GOLIM4O00461 696 aa11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 BMS1Q14692 1282 aaKnown RBP11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 SPA17Q15506 151 aa11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 ABCC1P33527 1531 aa11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 SLC26A8Q96RN1 970 aa11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 HSP90AB3PQ58FF7 597 aa11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 TXNDC2Q86VQ3 553 aa11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 DNAAF4Q8WXU2 420 aa11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 FAM200AQ8TCP9 573 aa11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 NUDT16Q96DE0 195 aaKnown RBP11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 C8orf76Q96K31 380 aa11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 NAA15Q9BXJ9 866 aaKnown RBP11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 KIAA1328Q86T90 577 aa11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 DDX12PQ92771 950 aa11.95□□□□□ -0.5
CCDC88A-202ENST00000336838 C20orf194Q5TEA3 1177 aa11.94□□□□□ -0.5
CCDC88A-202ENST00000336838 LUZP1Q86V48 1076 aa11.94□□□□□ -0.5
CCDC88A-202ENST00000336838 FKBP15Q5T1M5 1219 aa11.94□□□□□ -0.5
CCDC88A-202ENST00000336838 DESP17661 470 aa11.94□□□□□ -0.5
CCDC88A-202ENST00000336838 KCNG4Q8TDN1 519 aa11.94□□□□□ -0.5
CCDC88A-202ENST00000336838 ECHDC1Q9NTX5 307 aa11.94□□□□□ -0.5
CCDC88A-202ENST00000336838 PTPRKQ15262 1439 aa11.94□□□□□ -0.5
CCDC88A-202ENST00000336838 RBM10P98175 930 aaKnown RBP11.94□□□□□ -0.5
CCDC88A-202ENST00000336838 KRT222Q8N1A0 295 aa11.94□□□□□ -0.5
CCDC88A-202ENST00000336838 ADCY10Q96PN6 1610 aa11.94□□□□□ -0.5
CCDC88A-202ENST00000336838 ALS2CR12Q96Q35 445 aa11.94□□□□□ -0.5
CCDC88A-202ENST00000336838 ADCY5O95622 1261 aa11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 CABP4P57796 275 aa11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 A2MP01023 1474 aa11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 TAF4BQ92750 862 aa11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 ZKSCAN5Q9Y2L8 839 aa11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 PPIP5K1Q6PFW1 1433 aa11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 KRT18P05783 430 aaKnown RBP11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 PRKCSHP14314 528 aaPredicted RBP11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 SOGA3Q5TF21 947 aa11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 USP25Q9UHP3 1055 aa11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 MPHOSPH8Q99549 860 aa11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 ATP10BO94823 1461 aa11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 USO1O60763 962 aaKnown RBP11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 PREX2Q70Z35 1606 aa11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 ATP7AQ04656 1500 aa11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 WDR7Q9Y4E6 1490 aa11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 ZSCAN22P10073 491 aaPredicted RBP11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 EZRP15311 586 aaKnown RBP11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 GBP2P32456 591 aaPredicted RBP11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 C8orf34Q49A92 452 aa11.93□□□□□ -0.5
CCDC88A-202ENST00000336838 FEZ1Q99689 392 aa11.92□□□□□ -0.5
CCDC88A-202ENST00000336838 RAD50Q92878 1312 aa11.92□□□□□ -0.5
CCDC88A-202ENST00000336838 CCDC12Q8WUD4 166 aaPredicted RBP11.92□□□□□ -0.5
CCDC88A-202ENST00000336838 BCL11BQ9C0K0 894 aaPredicted RBP11.92□□□□□ -0.5
CCDC88A-202ENST00000336838 V9GYY5 206 aaPredicted RBP11.92□□□□□ -0.5
CCDC88A-202ENST00000336838 YEATS4O95619 227 aa11.92□□□□□ -0.5
CCDC88A-202ENST00000336838 TNNT1P13805 278 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms