RNA–Protein interactions for RNA: ENST00000333090.4

TSKU-201, Transcript of tsukushi, small leucine rich proteoglycan, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSKU, Length 2,712 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSKU-201ENST00000333090 ARHGEF10O15013 1369 aa28.45■■■□□ 2.15
TSKU-201ENST00000333090 TMEM87AQ8NBN3 555 aa28.44■■■□□ 2.14
TSKU-201ENST00000333090 PIBF1Q8WXW3 757 aa28.44■■■□□ 2.14
TSKU-201ENST00000333090 NUTM2GQ5VZR2 741 aa28.43■■■□□ 2.14
TSKU-201ENST00000333090 UBTFL1P0CB47 393 aaPredicted RBP28.43■■■□□ 2.14
TSKU-201ENST00000333090 ZSCAN22P10073 491 aaPredicted RBP28.43■■■□□ 2.14
TSKU-201ENST00000333090 NOLC1Q14978 699 aaKnown RBP eCLIP28.43■■■□□ 2.14
TSKU-201ENST00000333090 C17orf53Q8N3J3 647 aaPredicted RBP28.43■■■□□ 2.14
TSKU-201ENST00000333090 MYRIPQ8NFW9 859 aa28.43■■■□□ 2.14
TSKU-201ENST00000333090 SIRT1Q96EB6 747 aa28.43■■■□□ 2.14
TSKU-201ENST00000333090 PLEKHG5O94827 1062 aa28.42■■■□□ 2.14
TSKU-201ENST00000333090 JARID2Q92833 1246 aaPredicted RBP28.42■■■□□ 2.14
TSKU-201ENST00000333090 USP44Q9H0E7 712 aa28.42■■■□□ 2.14
TSKU-201ENST00000333090 SOS1Q07889 1333 aaPredicted RBP28.42■■■□□ 2.14
TSKU-201ENST00000333090 KIF13AQ9H1H9 1805 aa28.42■■■□□ 2.14
TSKU-201ENST00000333090 AOX1Q06278 1338 aa28.42■■■□□ 2.14
TSKU-201ENST00000333090 RIMS1Q86UR5 1692 aaKnown RBP28.42■■■□□ 2.14
TSKU-201ENST00000333090 RGPD1P0DJD0 1748 aa28.42■■■□□ 2.14
TSKU-201ENST00000333090 FIBPO43427 364 aa28.42■■■□□ 2.14
TSKU-201ENST00000333090 PLCB2Q00722 1185 aa28.41■■■□□ 2.14
TSKU-201ENST00000333090 SNX14Q9Y5W7 946 aa28.41■■■□□ 2.14
TSKU-201ENST00000333090 RAD50Q92878 1312 aa28.41■■■□□ 2.14
TSKU-201ENST00000333090 STX6O43752 255 aa28.41■■■□□ 2.14
TSKU-201ENST00000333090 AK2P54819 239 aa28.41■■■□□ 2.14
TSKU-201ENST00000333090 SURF6O75683 361 aaKnown RBP28.4■■■□□ 2.14
TSKU-201ENST00000333090 SYT1P21579 422 aa28.4■■■□□ 2.14
TSKU-201ENST00000333090 UBE2HP62256 183 aa28.4■■■□□ 2.14
TSKU-201ENST00000333090 TSC1Q92574 1164 aa28.4■■■□□ 2.14
TSKU-201ENST00000333090 TECPR2O15040 1411 aa28.4■■■□□ 2.14
TSKU-201ENST00000333090 PTPRUQ92729 1446 aa28.4■■■□□ 2.14
TSKU-201ENST00000333090 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.4■■■□□ 2.14
TSKU-201ENST00000333090 EPB41L2O43491 1005 aaKnown RBP28.4■■■□□ 2.14
TSKU-201ENST00000333090 AMOTL2Q9Y2J4 779 aa28.4■■■□□ 2.14
TSKU-201ENST00000333090 SGSM2O43147 1006 aa28.39■■■□□ 2.14
TSKU-201ENST00000333090 USP6P35125 1406 aa28.38■■■□□ 2.13
TSKU-201ENST00000333090 LETM1O95202 739 aaPredicted RBP28.38■■■□□ 2.13
TSKU-201ENST00000333090 RASEFQ8IZ41 740 aa28.38■■■□□ 2.13
TSKU-201ENST00000333090 TTC14Q96N46 770 aa28.38■■■□□ 2.13
TSKU-201ENST00000333090 EYA1Q99502 592 aa28.38■■■□□ 2.13
TSKU-201ENST00000333090 SMC3Q9UQE7 1217 aa28.38■■■□□ 2.13
TSKU-201ENST00000333090 RUFY3Q7L099 469 aa28.37■■■□□ 2.13
TSKU-201ENST00000333090 SSH3Q8TE77 659 aa28.37■■■□□ 2.13
TSKU-201ENST00000333090 LIMCH1Q9UPQ0 1083 aa28.37■■■□□ 2.13
TSKU-201ENST00000333090 USP31Q70CQ4 1352 aa28.37■■■□□ 2.13
TSKU-201ENST00000333090 PPP1R42Q7Z4L9 355 aa28.37■■■□□ 2.13
TSKU-201ENST00000333090 PRIMPOLQ96LW4 560 aa28.37■■■□□ 2.13
TSKU-201ENST00000333090 ZSCAN21Q9Y5A6 473 aaPredicted RBP28.37■■■□□ 2.13
TSKU-201ENST00000333090 F13A1P00488 732 aa28.36■■■□□ 2.13
TSKU-201ENST00000333090 PI4K2BQ8TCG2 481 aa28.36■■■□□ 2.13
TSKU-201ENST00000333090 RBM33Q96EV2 1170 aaKnown RBP28.36■■■□□ 2.13
TSKU-201ENST00000333090 PLEKHG3A1L390 1219 aa28.36■■■□□ 2.13
TSKU-201ENST00000333090 DTNBO60941 627 aa28.36■■■□□ 2.13
TSKU-201ENST00000333090 AMPHP49418 695 aa28.35■■■□□ 2.13
TSKU-201ENST00000333090 GIMAP6Q6P9H5 292 aa28.35■■■□□ 2.13
TSKU-201ENST00000333090 RHPN1Q8TCX5 695 aa28.35■■■□□ 2.13
TSKU-201ENST00000333090 KDM4AO75164 1064 aa28.35■■■□□ 2.13
TSKU-201ENST00000333090 CPA1P15085 419 aa28.35■■■□□ 2.13
TSKU-201ENST00000333090 CWC27Q6UX04 472 aaKnown RBP28.35■■■□□ 2.13
TSKU-201ENST00000333090 LSG1Q9H089 658 aaKnown RBP28.35■■■□□ 2.13
TSKU-201ENST00000333090 UBR1Q8IWV7 1749 aa28.35■■■□□ 2.13
TSKU-201ENST00000333090 HMGN5P82970 282 aaKnown RBP28.34■■■□□ 2.13
TSKU-201ENST00000333090 SPG7Q9UQ90 795 aa28.34■■■□□ 2.13
TSKU-201ENST00000333090 ATP6V1DQ9Y5K8 247 aa28.34■■■□□ 2.13
TSKU-201ENST00000333090 KDRP35968 1356 aa28.34■■■□□ 2.13
TSKU-201ENST00000333090 FLT4P35916 1363 aa28.34■■■□□ 2.13
TSKU-201ENST00000333090 XRN1Q8IZH2 1706 aaKnown RBP28.33■■■□□ 2.13
TSKU-201ENST00000333090 RAB11FIP3O75154 756 aa28.33■■■□□ 2.13
TSKU-201ENST00000333090 CNTROBQ8N137 903 aa28.33■■■□□ 2.13
TSKU-201ENST00000333090 PRDM4Q9UKN5 801 aa28.33■■■□□ 2.13
TSKU-201ENST00000333090 GNAT3A8MTJ3 354 aa28.32■■■□□ 2.12
TSKU-201ENST00000333090 CASTP20810 708 aaKnown RBP28.32■■■□□ 2.12
TSKU-201ENST00000333090 NGDNQ8NEJ9 315 aaKnown RBP28.32■■■□□ 2.12
TSKU-201ENST00000333090 SRGAP3O43295 1099 aa28.32■■■□□ 2.12
TSKU-201ENST00000333090 CCDC94Q9BW85 323 aaPredicted RBP28.32■■■□□ 2.12
TSKU-201ENST00000333090 PHAXQ9H814 394 aaKnown RBP28.32■■■□□ 2.12
TSKU-201ENST00000333090 CEP170BQ9Y4F5 1589 aaPredicted RBP28.32■■■□□ 2.12
TSKU-201ENST00000333090 IGSF1Q8N6C5 1336 aa28.32■■■□□ 2.12
TSKU-201ENST00000333090 LARGE1O95461 756 aa28.31■■■□□ 2.12
TSKU-201ENST00000333090 CCDC83Q8IWF9 413 aa28.31■■■□□ 2.12
TSKU-201ENST00000333090 SBNO1A3KN83 1393 aa28.31■■■□□ 2.12
TSKU-201ENST00000333090 DNM1Q05193 864 aaKnown RBP28.3■■■□□ 2.12
TSKU-201ENST00000333090 PRDM10Q9NQV6 1147 aa28.3■■■□□ 2.12
TSKU-201ENST00000333090 FAM208AQ9UK61 1670 aaKnown RBP28.3■■■□□ 2.12
TSKU-201ENST00000333090 SMAP1Q8IYB5 467 aaPredicted RBP28.3■■■□□ 2.12
TSKU-201ENST00000333090 FAM177BA6PVY3 158 aa28.29■■■□□ 2.12
TSKU-201ENST00000333090 HDGFL1Q5TGJ6 251 aa28.29■■■□□ 2.12
TSKU-201ENST00000333090 KIF1BPQ96EK5 621 aa28.29■■■□□ 2.12
TSKU-201ENST00000333090 NALCNQ8IZF0 1738 aa28.29■■■□□ 2.12
TSKU-201ENST00000333090 GJB2P29033 226 aa28.29■■■□□ 2.12
TSKU-201ENST00000333090 ZNF710Q8N1W2 664 aa28.29■■■□□ 2.12
TSKU-201ENST00000333090 SPTLC3Q9NUV7 552 aa28.29■■■□□ 2.12
TSKU-201ENST00000333090 EID1Q9Y6B2 187 aa28.29■■■□□ 2.12
TSKU-201ENST00000333090 HTATSF1O43719 755 aaKnown RBP28.28■■■□□ 2.12
TSKU-201ENST00000333090 FUCA2Q9BTY2 467 aa28.28■■■□□ 2.12
TSKU-201ENST00000333090 POLA2Q14181 598 aa28.28■■■□□ 2.12
TSKU-201ENST00000333090 IL17REQ8NFR9 667 aa28.27■■■□□ 2.12
TSKU-201ENST00000333090 PLEKHG1Q9ULL1 1385 aa28.27■■■□□ 2.12
TSKU-201ENST00000333090 LTV1Q96GA3 475 aaPredicted RBP28.27■■■□□ 2.12
TSKU-201ENST00000333090 AP5Z1O43299 807 aa28.27■■■□□ 2.12
TSKU-201ENST00000333090 GTF2F1P35269 517 aaKnown RBP eCLIP28.27■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 743.1 ms