RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 NCKAP5LQ9HCH0 1330 aa17.42■□□□□ 0.38
TCOF1-201ENST00000323668 DYNC1I1O14576 645 aa17.42■□□□□ 0.38
TCOF1-201ENST00000323668 FOXO3O43524 673 aa17.42■□□□□ 0.38
TCOF1-201ENST00000323668 OLFM4Q6UX06 510 aa17.42■□□□□ 0.38
TCOF1-201ENST00000323668 ZNF445P59923 1031 aa17.41■□□□□ 0.38
TCOF1-201ENST00000323668 MPRIPQ6WCQ1 1025 aa17.41■□□□□ 0.38
TCOF1-201ENST00000323668 FILIP1Q7Z7B0 1213 aa17.41■□□□□ 0.38
TCOF1-201ENST00000323668 AMOTQ4VCS5 1084 aa17.41■□□□□ 0.38
TCOF1-201ENST00000323668 MSH6P52701 1360 aa17.41■□□□□ 0.38
TCOF1-201ENST00000323668 CEP57L1Q8IYX8 460 aa17.41■□□□□ 0.38
TCOF1-201ENST00000323668 RBSNQ9H1K0 784 aa17.41■□□□□ 0.38
TCOF1-201ENST00000323668 TTC21AQ8NDW8 1320 aa17.41■□□□□ 0.38
TCOF1-201ENST00000323668 PLXNC1O60486 1568 aa17.41■□□□□ 0.38
TCOF1-201ENST00000323668 GOLGA6L1Q8N7Z2 621 aa17.4■□□□□ 0.38
TCOF1-201ENST00000323668 CNPY2Q9Y2B0 182 aa17.4■□□□□ 0.38
TCOF1-201ENST00000323668 EVA1CP58658 441 aa17.4■□□□□ 0.38
TCOF1-201ENST00000323668 G2E3Q7L622 706 aa17.4■□□□□ 0.38
TCOF1-201ENST00000323668 CKAP2LQ8IYA6 745 aa17.4■□□□□ 0.38
TCOF1-201ENST00000323668 TFIP11Q9UBB9 837 aaKnown RBP17.4■□□□□ 0.38
TCOF1-201ENST00000323668 GIMAP6Q6P9H5 292 aa17.4■□□□□ 0.38
TCOF1-201ENST00000323668 PES1O00541 588 aaKnown RBP17.4■□□□□ 0.38
TCOF1-201ENST00000323668 PDCL2Q8N4E4 241 aa17.4■□□□□ 0.38
TCOF1-201ENST00000323668 GSPT1P15170 499 aaKnown RBP17.39■□□□□ 0.37
TCOF1-201ENST00000323668 ANXA1P04083 346 aa17.39■□□□□ 0.37
TCOF1-201ENST00000323668 TSR1Q2NL82 804 aaKnown RBP17.39■□□□□ 0.37
TCOF1-201ENST00000323668 CCDC158Q5M9N0 1113 aa17.39■□□□□ 0.37
TCOF1-201ENST00000323668 DDX19AQ9NUU7 478 aaKnown RBP17.39■□□□□ 0.37
TCOF1-201ENST00000323668 EDC4Q6P2E9 1401 aaKnown RBP17.38■□□□□ 0.37
TCOF1-201ENST00000323668 CFAP65Q6ZU64 1925 aaKnown RBP17.38■□□□□ 0.37
TCOF1-201ENST00000323668 LMBRD1Q9NUN5 540 aa17.38■□□□□ 0.37
TCOF1-201ENST00000323668 HYPKQ9NX55 129 aa17.38■□□□□ 0.37
TCOF1-201ENST00000323668 TNNT3P45378 269 aaPredicted RBP17.38■□□□□ 0.37
TCOF1-201ENST00000323668 GPS2Q13227 327 aa17.38■□□□□ 0.37
TCOF1-201ENST00000323668 PHF23Q9BUL5 403 aaPredicted RBP17.38■□□□□ 0.37
TCOF1-201ENST00000323668 ERICH2A1L162 156 aa17.38■□□□□ 0.37
TCOF1-201ENST00000323668 ATF3P18847 181 aa17.38■□□□□ 0.37
TCOF1-201ENST00000323668 TEX35Q5T0J7 233 aa17.38■□□□□ 0.37
TCOF1-201ENST00000323668 MAP3K2Q9Y2U5 619 aa17.38■□□□□ 0.37
TCOF1-201ENST00000323668 UGGT1Q9NYU2 1555 aa17.38■□□□□ 0.37
TCOF1-201ENST00000323668 JMYQ8N9B5 988 aa17.38■□□□□ 0.37
TCOF1-201ENST00000323668 PHF8Q9UPP1 1060 aa17.38■□□□□ 0.37
TCOF1-201ENST00000323668 IQGAP3Q86VI3 1631 aa17.38■□□□□ 0.37
TCOF1-201ENST00000323668 UHRF1BP1LA0JNW5 1464 aa17.38■□□□□ 0.37
TCOF1-201ENST00000323668 BRPF1P55201 1214 aaPredicted RBP17.37■□□□□ 0.37
TCOF1-201ENST00000323668 DHX8Q14562 1220 aaKnown RBP17.37■□□□□ 0.37
TCOF1-201ENST00000323668 PRIMPOLQ96LW4 560 aa17.37■□□□□ 0.37
TCOF1-201ENST00000323668 KIF24Q5T7B8 1368 aa17.37■□□□□ 0.37
TCOF1-201ENST00000323668 NOL7Q9UMY1 257 aaKnown RBP17.37■□□□□ 0.37
TCOF1-201ENST00000323668 SOS1Q07889 1333 aaPredicted RBP17.36■□□□□ 0.37
TCOF1-201ENST00000323668 F13A1P00488 732 aa17.36■□□□□ 0.37
TCOF1-201ENST00000323668 GAS2L3Q86XJ1 694 aa17.36■□□□□ 0.37
TCOF1-201ENST00000323668 ZNF830Q96NB3 372 aaPredicted RBP17.36■□□□□ 0.37
TCOF1-201ENST00000323668 CABP4P57796 275 aa17.36■□□□□ 0.37
TCOF1-201ENST00000323668 EYA1Q99502 592 aa17.36■□□□□ 0.37
TCOF1-201ENST00000323668 GTF2E1P29083 439 aaPredicted RBP17.36■□□□□ 0.37
TCOF1-201ENST00000323668 NOLC1Q14978 699 aaKnown RBP eCLIP17.36■□□□□ 0.37
TCOF1-201ENST00000323668 PDILTQ8N807 584 aa17.36■□□□□ 0.37
TCOF1-201ENST00000323668 NECAB1Q8N987 351 aa17.36■□□□□ 0.37
TCOF1-201ENST00000323668 ANKRD20A12PQ8NF67 263 aa17.36■□□□□ 0.37
TCOF1-201ENST00000323668 CHPF2Q9P2E5 772 aa17.36■□□□□ 0.37
TCOF1-201ENST00000323668 CTNNA3Q9UI47 895 aa17.36■□□□□ 0.37
TCOF1-201ENST00000323668 FLT4P35916 1363 aa17.36■□□□□ 0.37
TCOF1-201ENST00000323668 CEP126Q9P2H0 1117 aa17.36■□□□□ 0.37
TCOF1-201ENST00000323668 CCP110O43303 1012 aa17.35■□□□□ 0.37
TCOF1-201ENST00000323668 FKBP4Q02790 459 aaKnown RBP eCLIP17.35■□□□□ 0.37
TCOF1-201ENST00000323668 TTC39AQ5SRH9 613 aa17.35■□□□□ 0.37
TCOF1-201ENST00000323668 TBC1D2BQ9UPU7 963 aa17.35■□□□□ 0.37
TCOF1-201ENST00000323668 AK2P54819 239 aa17.35■□□□□ 0.37
TCOF1-201ENST00000323668 CROCC2H7BZ55 1655 aa17.35■□□□□ 0.37
TCOF1-201ENST00000323668 U3KPZ7 1027 aaPredicted RBP17.35■□□□□ 0.37
TCOF1-201ENST00000323668 MAP3K19Q56UN5 1328 aa17.34■□□□□ 0.37
TCOF1-201ENST00000323668 ZNF165P49910 485 aa17.34■□□□□ 0.37
TCOF1-201ENST00000323668 PROSER2Q86WR7 435 aaPredicted RBP17.34■□□□□ 0.37
TCOF1-201ENST00000323668 KDM4AO75164 1064 aa17.34■□□□□ 0.37
TCOF1-201ENST00000323668 ANKLE2Q86XL3 938 aa17.34■□□□□ 0.37
TCOF1-201ENST00000323668 MYD88Q99836 296 aa17.34■□□□□ 0.37
TCOF1-201ENST00000323668 DNM1Q05193 864 aaKnown RBP17.34■□□□□ 0.37
TCOF1-201ENST00000323668 TTC12Q9H892 705 aaPredicted RBP17.34■□□□□ 0.37
TCOF1-201ENST00000323668 POLR1AO95602 1720 aaPredicted RBP17.34■□□□□ 0.37
TCOF1-201ENST00000323668 TULP1O00294 542 aaPredicted RBP17.33■□□□□ 0.37
TCOF1-201ENST00000323668 SERPINC1P01008 464 aa17.33■□□□□ 0.37
TCOF1-201ENST00000323668 HMGB1P09429 215 aaKnown RBP17.33■□□□□ 0.37
TCOF1-201ENST00000323668 ANO10Q9NW15 660 aa17.33■□□□□ 0.37
TCOF1-201ENST00000323668 CLIP2Q9UDT6 1046 aa17.33■□□□□ 0.37
TCOF1-201ENST00000323668 RBM8AQ9Y5S9 174 aaKnown RBP17.33■□□□□ 0.37
TCOF1-201ENST00000323668 ZC3H6P61129 1189 aaKnown RBP17.33■□□□□ 0.36
TCOF1-201ENST00000323668 HMG20BQ9P0W2 317 aa17.33■□□□□ 0.36
TCOF1-201ENST00000323668 CTAGE5O15320 804 aa17.32■□□□□ 0.36
TCOF1-201ENST00000323668 CD2BP2O95400 341 aaKnown RBP17.32■□□□□ 0.36
TCOF1-201ENST00000323668 CEBPAP49715 358 aaPredicted RBP17.32■□□□□ 0.36
TCOF1-201ENST00000323668 CCDC57Q2TAC2 916 aa17.32■□□□□ 0.36
TCOF1-201ENST00000323668 UNC13BO14795 1591 aa17.32■□□□□ 0.36
TCOF1-201ENST00000323668 SYT1P21579 422 aa17.32■□□□□ 0.36
TCOF1-201ENST00000323668 ATP2B1P20020 1258 aa17.32■□□□□ 0.36
TCOF1-201ENST00000323668 TTC41PQ6P2S7 1318 aa17.32■□□□□ 0.36
TCOF1-201ENST00000323668 TNRQ92752 1358 aa17.32■□□□□ 0.36
TCOF1-201ENST00000323668 PTPN14Q15678 1187 aa17.32■□□□□ 0.36
TCOF1-201ENST00000323668 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.32■□□□□ 0.361e-6■■■□□ 16.8
TCOF1-201ENST00000323668 ALDH1L1O75891 902 aa17.31■□□□□ 0.36
TCOF1-201ENST00000323668 SART3Q15020 963 aaKnown RBP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms