RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 PDE4CQ08493 712 aa6.71□□□□□ -1.34
CD44-202ENST00000278385 CDCA8Q53HL2 280 aa6.71□□□□□ -1.34
CD44-202ENST00000278385 CFAP70Q5T0N1 1121 aa6.71□□□□□ -1.34
CD44-202ENST00000278385 SIX5Q8N196 739 aa6.71□□□□□ -1.34
CD44-202ENST00000278385 PGBD3Q8N328 593 aa6.71□□□□□ -1.34
CD44-202ENST00000278385 RHBDD1Q8TEB9 315 aa6.71□□□□□ -1.34
CD44-202ENST00000278385 PBXIP1Q96AQ6 731 aa6.71□□□□□ -1.34
CD44-202ENST00000278385 ZNF358Q9NW07 568 aa6.71□□□□□ -1.34
CD44-202ENST00000278385 CABP1Q9NZU7 370 aa6.71□□□□□ -1.34
CD44-202ENST00000278385 SPATA31C2B4DYI2 1134 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 USP17L15C9J2P7 530 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 USP17L10C9JJH3 530 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 USP17L13C9JLJ4 530 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 USP17L12C9JPN9 530 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 USP17L11C9JVI0 530 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 USP17L21D6R901 530 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 USP17L18D6R9N7 530 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 USP17L22D6RA61 530 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 USP17L17D6RBQ6 530 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 USP17L19D6RCP7 530 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 USP17L20D6RJB6 530 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 H7C1W4 665 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 M0R2N6 131 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 CDK2AP1O14519 115 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 PPP1R15AO75807 674 aaPredicted RBP6.7□□□□□ -1.34
CD44-202ENST00000278385 RHOQP17081 205 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 SCNN1DP51172 638 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 CLDN10P78369 228 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 USP17L24Q0WX57 530 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 NBPF1Q3BBV0 1214 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 KANK4Q5T7N3 995 aaPredicted RBP6.7□□□□□ -1.34
CD44-202ENST00000278385 NBPF10Q6P3W6 841 aaKnown RBP6.7□□□□□ -1.34
CD44-202ENST00000278385 RIPOR1Q6ZS17 1223 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 PPARGC1BQ86YN6 1023 aaKnown RBP6.7□□□□□ -1.34
CD44-202ENST00000278385 ANKMY2Q8IV38 441 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 AIDAQ96BJ3 306 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 SLC4A9Q96Q91 983 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 GAS2L1Q99501 681 aaPredicted RBP6.7□□□□□ -1.34
CD44-202ENST00000278385 ZNF232Q9UNY5 417 aa6.7□□□□□ -1.34
CD44-202ENST00000278385 A0A1B0GTH6 734 aa6.69□□□□□ -1.34
CD44-202ENST00000278385 TATP17735 454 aaPredicted RBP6.69□□□□□ -1.34
CD44-202ENST00000278385 PHKA2P46019 1235 aa6.69□□□□□ -1.34
CD44-202ENST00000278385 DPYDQ12882 1025 aa6.69□□□□□ -1.34
CD44-202ENST00000278385 VTI1AQ96AJ9 217 aa6.69□□□□□ -1.34
CD44-202ENST00000278385 NEUROD4Q9HD90 331 aa6.69□□□□□ -1.34
CD44-202ENST00000278385 DYRK1BQ9Y463 629 aa6.69□□□□□ -1.34
CD44-202ENST00000278385 WDR62O43379 1518 aa6.69□□□□□ -1.34
CD44-202ENST00000278385 SFI1A8K8P3 1242 aa6.68□□□□□ -1.34
CD44-202ENST00000278385 TMEM229AB2RXF0 380 aa6.68□□□□□ -1.34
CD44-202ENST00000278385 TERTO14746 1132 aaKnown RBP6.68□□□□□ -1.34
CD44-202ENST00000278385 ZBTB7BO15156 539 aaPredicted RBP6.68□□□□□ -1.34
CD44-202ENST00000278385 KCNA1Q09470 495 aa6.68□□□□□ -1.34
CD44-202ENST00000278385 PTK7Q13308 1070 aa6.68□□□□□ -1.34
CD44-202ENST00000278385 CCDC155Q8N6L0 562 aa6.68□□□□□ -1.34
CD44-202ENST00000278385 IRF7Q92985 503 aa6.68□□□□□ -1.34
CD44-202ENST00000278385 GMCL1Q96IK5 515 aa6.68□□□□□ -1.34
CD44-202ENST00000278385 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.68□□□□□ -1.345e-38■■■■■ 698.7
CD44-202ENST00000278385 NOVA2Q9UNW9 492 aaKnown RBP6.68□□□□□ -1.34
CD44-202ENST00000278385 GJA3Q9Y6H8 435 aa6.68□□□□□ -1.34
CD44-202ENST00000278385 KIF21AQ7Z4S6 1674 aa6.68□□□□□ -1.34
CD44-202ENST00000278385 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.67□□□□□ -1.34
CD44-202ENST00000278385 CDC14CA4D256 554 aa6.67□□□□□ -1.34
CD44-202ENST00000278385 PPM1GO15355 546 aaPredicted RBP6.67□□□□□ -1.34
CD44-202ENST00000278385 STAU1O95793 577 aaKnown RBP6.67□□□□□ -1.34
CD44-202ENST00000278385 PLA2G4AP47712 749 aa6.67□□□□□ -1.34
CD44-202ENST00000278385 CRTC2Q53ET0 693 aaPredicted RBP6.67□□□□□ -1.34
CD44-202ENST00000278385 EFHC2Q5JST6 749 aa6.67□□□□□ -1.34
CD44-202ENST00000278385 GAS2L2Q8NHY3 880 aa6.67□□□□□ -1.34
CD44-202ENST00000278385 IGSF5Q9NSI5 407 aa6.67□□□□□ -1.34
CD44-202ENST00000278385 PPP1R12BO60237 982 aaPredicted RBP6.66□□□□□ -1.34
CD44-202ENST00000278385 PPFIA3O75145 1194 aa6.66□□□□□ -1.34
CD44-202ENST00000278385 WFS1O76024 890 aa6.66□□□□□ -1.34
CD44-202ENST00000278385 F11P03951 625 aa6.66□□□□□ -1.34
CD44-202ENST00000278385 CANXP27824 592 aaKnown RBP6.66□□□□□ -1.34
CD44-202ENST00000278385 C4orf17Q53FE4 359 aa6.66□□□□□ -1.34
CD44-202ENST00000278385 BICDL1Q6ZP65 573 aa6.66□□□□□ -1.34
CD44-202ENST00000278385 SV2AQ7L0J3 742 aa6.66□□□□□ -1.34
CD44-202ENST00000278385 TNS4Q8IZW8 715 aa6.66□□□□□ -1.34
CD44-202ENST00000278385 C1orf216Q8TAB5 229 aa6.66□□□□□ -1.34
CD44-202ENST00000278385 FHDC1Q9C0D6 1143 aaPredicted RBP6.66□□□□□ -1.34
CD44-202ENST00000278385 SCHIP1Q9P0W5 487 aaPredicted RBP6.66□□□□□ -1.34
CD44-202ENST00000278385 KIAA1024Q9UPX6 916 aa6.66□□□□□ -1.34
CD44-202ENST00000278385 HRH3Q9Y5N1 445 aa6.66□□□□□ -1.34
CD44-202ENST00000278385 SERTM1A2A2V5 107 aa6.65□□□□□ -1.34
CD44-202ENST00000278385 SLC35F4A4IF30 521 aa6.65□□□□□ -1.34
CD44-202ENST00000278385 ATG7O95352 703 aa6.65□□□□□ -1.34
CD44-202ENST00000278385 ITGA6P23229 1130 aa6.65□□□□□ -1.34
CD44-202ENST00000278385 PSMA6P60900 246 aaKnown RBP6.65□□□□□ -1.34
CD44-202ENST00000278385 ELOAQ14241 798 aaKnown RBP6.65□□□□□ -1.34
CD44-202ENST00000278385 MTFR1Q15390 333 aa6.65□□□□□ -1.34
CD44-202ENST00000278385 ARSJQ5FYB0 599 aaPredicted RBP6.65□□□□□ -1.34
CD44-202ENST00000278385 SLC9A9Q8IVB4 645 aa6.65□□□□□ -1.34
CD44-202ENST00000278385 TSEN2Q8NCE0 465 aaKnown RBP6.65□□□□□ -1.34
CD44-202ENST00000278385 CHMP7Q8WUX9 453 aaPredicted RBP6.65□□□□□ -1.34
CD44-202ENST00000278385 ZNF775Q96BV0 537 aaPredicted RBP6.65□□□□□ -1.34
CD44-202ENST00000278385 TRERF1Q96PN7 1200 aa6.65□□□□□ -1.34
CD44-202ENST00000278385 GPAMQ9HCL2 828 aa6.65□□□□□ -1.34
CD44-202ENST00000278385 URB2Q14146 1524 aaKnown RBP6.65□□□□□ -1.35
CD44-202ENST00000278385 ABCC8Q09428 1581 aa6.65□□□□□ -1.35
CD44-202ENST00000278385 BRD1O95696 1058 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms