RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PRKRIP1Q9H875 184 aaPredicted RBP16.04■□□□□ 0.16
CCDC88A-201ENST00000263630 PLEKHO1Q53GL0 409 aaPredicted RBP16.04■□□□□ 0.16
CCDC88A-201ENST00000263630 DZIP1Q86YF9 867 aaKnown RBP16.04■□□□□ 0.16
CCDC88A-201ENST00000263630 RSRC1Q96IZ7 334 aaKnown RBP16.04■□□□□ 0.16
CCDC88A-201ENST00000263630 MYO15BQ96JP2 1530 aa16.03■□□□□ 0.16
CCDC88A-201ENST00000263630 TUBB4BP68371 445 aa16.03■□□□□ 0.16
CCDC88A-201ENST00000263630 FKBP4Q02790 459 aaKnown RBP eCLIP16.03■□□□□ 0.16
CCDC88A-201ENST00000263630 PAXBP1Q9Y5B6 917 aa16.03■□□□□ 0.16
CCDC88A-201ENST00000263630 SARNPP82979 210 aaKnown RBP16.03■□□□□ 0.16
CCDC88A-201ENST00000263630 GBP7Q8N8V2 638 aaPredicted RBP16.03■□□□□ 0.16
CCDC88A-201ENST00000263630 PRKCSHP14314 528 aaPredicted RBP16.03■□□□□ 0.16
CCDC88A-201ENST00000263630 STMN1P16949 149 aa16.03■□□□□ 0.16
CCDC88A-201ENST00000263630 USP37Q86T82 979 aa16.03■□□□□ 0.16
CCDC88A-201ENST00000263630 JADE2Q9NQC1 790 aa16.03■□□□□ 0.16
CCDC88A-201ENST00000263630 BAG4O95429 457 aaKnown RBP16.03■□□□□ 0.16
CCDC88A-201ENST00000263630 PAIP2Q9BPZ3 127 aaKnown RBP16.03■□□□□ 0.16
CCDC88A-201ENST00000263630 TNNT1P13805 278 aa16.03■□□□□ 0.16
CCDC88A-201ENST00000263630 NLRP2Q9NX02 1062 aa16.03■□□□□ 0.16
CCDC88A-201ENST00000263630 KLHL10Q6JEL2 608 aa16.02■□□□□ 0.16
CCDC88A-201ENST00000263630 SYNCQ9H7C4 482 aa16.02■□□□□ 0.16
CCDC88A-201ENST00000263630 HYPKQ9NX55 129 aa16.02■□□□□ 0.16
CCDC88A-201ENST00000263630 PANK1Q8TE04 598 aa16.02■□□□□ 0.16
CCDC88A-201ENST00000263630 SCAND2PQ9GZW5 306 aaPredicted RBP16.02■□□□□ 0.16
CCDC88A-201ENST00000263630 OTUD6BQ8N6M0 293 aa16.02■□□□□ 0.16
CCDC88A-201ENST00000263630 ERCC6LQ2NKX8 1250 aa16.02■□□□□ 0.16
CCDC88A-201ENST00000263630 OPA1O60313 960 aa16.02■□□□□ 0.15
CCDC88A-201ENST00000263630 PPFIA2O75334 1257 aa16.02■□□□□ 0.15
CCDC88A-201ENST00000263630 JAKMIP2Q96AA8 810 aa16.02■□□□□ 0.15
CCDC88A-201ENST00000263630 EPSTI1Q96J88 318 aa16.01■□□□□ 0.15
CCDC88A-201ENST00000263630 UTP14AQ9BVJ6 771 aaKnown RBP16.01■□□□□ 0.15
CCDC88A-201ENST00000263630 CCDC144CPQ8IYA2 1237 aa16.01■□□□□ 0.15
CCDC88A-201ENST00000263630 LRRC27Q9C0I9 530 aa16.01■□□□□ 0.15
CCDC88A-201ENST00000263630 LRP2BPQ9P2M1 347 aa16.01■□□□□ 0.15
CCDC88A-201ENST00000263630 HMOX1P09601 288 aa16.01■□□□□ 0.15
CCDC88A-201ENST00000263630 DNA2P51530 1060 aa16.01■□□□□ 0.15
CCDC88A-201ENST00000263630 VCX3BQ9H321 246 aa16.01■□□□□ 0.15
CCDC88A-201ENST00000263630 CCDC63Q8NA47 563 aa16.01■□□□□ 0.15
CCDC88A-201ENST00000263630 CALML4Q96GE6 196 aa16.01■□□□□ 0.15
CCDC88A-201ENST00000263630 GPRASP1Q5JY77 1395 aa16.01■□□□□ 0.15
CCDC88A-201ENST00000263630 TXNDC16Q9P2K2 825 aa16.01■□□□□ 0.15
CCDC88A-201ENST00000263630 CNTLNQ9NXG0 1405 aa16.01■□□□□ 0.15
CCDC88A-201ENST00000263630 CASQ2O14958 399 aaPredicted RBP16.01■□□□□ 0.15
CCDC88A-201ENST00000263630 CCDC96Q2M329 555 aa16■□□□□ 0.15
CCDC88A-201ENST00000263630 GAS8O95995 478 aa16■□□□□ 0.15
CCDC88A-201ENST00000263630 ATP2A2P16615 1042 aaKnown RBP16■□□□□ 0.15
CCDC88A-201ENST00000263630 NCAPGQ9BPX3 1015 aa16■□□□□ 0.15
CCDC88A-201ENST00000263630 PRC1O43663 620 aa16■□□□□ 0.15
CCDC88A-201ENST00000263630 KANK3Q6NY19 840 aa16■□□□□ 0.15
CCDC88A-201ENST00000263630 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16■□□□□ 0.155e-7■■□□□ 13.2
CCDC88A-201ENST00000263630 FAM177BA6PVY3 158 aa16■□□□□ 0.15
CCDC88A-201ENST00000263630 MTIF2P46199 727 aaKnown RBP16■□□□□ 0.15
CCDC88A-201ENST00000263630 CCDC121Q6ZUS5 278 aa16■□□□□ 0.15
CCDC88A-201ENST00000263630 PNISRQ8TF01 805 aaKnown RBP16■□□□□ 0.15
CCDC88A-201ENST00000263630 IRX3P78415 501 aaPredicted RBP15.99■□□□□ 0.15
CCDC88A-201ENST00000263630 SYCP3Q8IZU3 236 aa15.99■□□□□ 0.15
CCDC88A-201ENST00000263630 CCDC12Q8WUD4 166 aaPredicted RBP15.99■□□□□ 0.15
CCDC88A-201ENST00000263630 AIDAQ96BJ3 306 aa15.99■□□□□ 0.15
CCDC88A-201ENST00000263630 TRIM7Q9C029 511 aa15.99■□□□□ 0.15
CCDC88A-201ENST00000263630 CFAP157Q5JU67 520 aa15.99■□□□□ 0.15
CCDC88A-201ENST00000263630 ZNF354CQ86Y25 554 aa15.99■□□□□ 0.15
CCDC88A-201ENST00000263630 JAKMIP1Q96N16 626 aaKnown RBP15.99■□□□□ 0.15
CCDC88A-201ENST00000263630 LUC7L2Q9Y383 392 aaKnown RBP15.99■□□□□ 0.15
CCDC88A-201ENST00000263630 HNRNPMP52272 730 aaKnown RBP eCLIP15.99■□□□□ 0.15
CCDC88A-201ENST00000263630 STMN2Q93045 179 aa15.99■□□□□ 0.15
CCDC88A-201ENST00000263630 DHX57Q6P158 1386 aaKnown RBP15.99■□□□□ 0.15
CCDC88A-201ENST00000263630 CAVIN2O95810 425 aa15.98■□□□□ 0.15
CCDC88A-201ENST00000263630 SYCE3A1L190 88 aa15.98■□□□□ 0.15
CCDC88A-201ENST00000263630 RAB3IPQ96QF0 476 aaPredicted RBP15.98■□□□□ 0.15
CCDC88A-201ENST00000263630 PUF60Q9UHX1 559 aaKnown RBP15.98■□□□□ 0.15
CCDC88A-201ENST00000263630 PRDM10Q9NQV6 1147 aa15.98■□□□□ 0.15
CCDC88A-201ENST00000263630 SCAPERQ9BY12 1400 aa15.98■□□□□ 0.15
CCDC88A-201ENST00000263630 STX6O43752 255 aa15.98■□□□□ 0.15
CCDC88A-201ENST00000263630 SNW1Q13573 536 aaKnown RBP15.98■□□□□ 0.15
CCDC88A-201ENST00000263630 ARFGAP3Q9NP61 516 aa15.97■□□□□ 0.15
CCDC88A-201ENST00000263630 CIB2O75838 187 aa15.97■□□□□ 0.15
CCDC88A-201ENST00000263630 MCM5P33992 734 aa15.97■□□□□ 0.15
CCDC88A-201ENST00000263630 CNNM3Q8NE01 707 aa15.97■□□□□ 0.15
CCDC88A-201ENST00000263630 AKAP2Q9Y2D5 859 aa15.97■□□□□ 0.15
CCDC88A-201ENST00000263630 CASTP20810 708 aaKnown RBP15.97■□□□□ 0.15
CCDC88A-201ENST00000263630 MKNK2Q9HBH9 465 aa15.97■□□□□ 0.15
CCDC88A-201ENST00000263630 IGHMBP2P38935 993 aaKnown RBP15.97■□□□□ 0.15
CCDC88A-201ENST00000263630 ATP11AP98196 1134 aa15.97■□□□□ 0.15
CCDC88A-201ENST00000263630 CCDC129Q6ZRS4 1044 aa15.97■□□□□ 0.15
CCDC88A-201ENST00000263630 MPNDQ8N594 471 aa15.97■□□□□ 0.15
CCDC88A-201ENST00000263630 TCP11L1Q9NUJ3 509 aa15.97■□□□□ 0.15
CCDC88A-201ENST00000263630 CACNA2D3Q8IZS8 1091 aa15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 CRACR2BQ8N4Y2 399 aaPredicted RBP15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 TCHPQ9BT92 498 aa15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 CCDC171Q6TFL3 1326 aa15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 SETDB1Q15047 1291 aa15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 SLF2Q8IX21 1173 aa15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 PPFIBP2Q8ND30 876 aa15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 RBM42Q9BTD8 480 aaKnown RBP15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 CHMP4BP1P59074 171 aa15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 PPP4R3BQ5MIZ7 849 aa15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 CEP128Q6ZU80 1094 aa15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 CTCFLQ8NI51 663 aaPredicted RBP15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 MGEA5O60502 916 aa15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 CAMK4Q16566 473 aa15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 SH2D4BQ5SQS7 431 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms