RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 CNPY2Q9Y2B0 182 aa11.06□□□□□ -0.64
MSH4-201ENST00000263187 FIBPO43427 364 aa11.06□□□□□ -0.64
MSH4-201ENST00000263187 EID1Q9Y6B2 187 aa11.06□□□□□ -0.64
MSH4-201ENST00000263187 OVOS2A0A0J9YW53 1432 aa11.06□□□□□ -0.64
MSH4-201ENST00000263187 OVOS2Q6IE36 1432 aa11.06□□□□□ -0.64
MSH4-201ENST00000263187 FLT4P35916 1363 aa11.05□□□□□ -0.64
MSH4-201ENST00000263187 PRAMEF22A3QJZ6 481 aa11.05□□□□□ -0.64
MSH4-201ENST00000263187 BRD1O95696 1058 aa11.05□□□□□ -0.64
MSH4-201ENST00000263187 AIMP1Q12904 312 aaKnown RBP11.05□□□□□ -0.64
MSH4-201ENST00000263187 C17orf53Q8N3J3 647 aaPredicted RBP11.05□□□□□ -0.64
MSH4-201ENST00000263187 JARID2Q92833 1246 aaPredicted RBP11.05□□□□□ -0.64
MSH4-201ENST00000263187 TCEANC2Q96MN5 208 aa11.05□□□□□ -0.64
MSH4-201ENST00000263187 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.05□□□□□ -0.64
MSH4-201ENST00000263187 RHPN1Q8TCX5 695 aa11.05□□□□□ -0.64
MSH4-201ENST00000263187 SRCIN1Q9C0H9 1055 aa11.05□□□□□ -0.64
MSH4-201ENST00000263187 CCDC9Q9Y3X0 531 aaKnown RBP11.05□□□□□ -0.64
MSH4-201ENST00000263187 PEAK1Q9H792 1746 aa11.05□□□□□ -0.64
MSH4-201ENST00000263187 IBTKQ9P2D0 1353 aaPredicted RBP11.05□□□□□ -0.64
MSH4-201ENST00000263187 SALL3Q9BXA9 1300 aa11.04□□□□□ -0.64
MSH4-201ENST00000263187 COL9A3Q14050 684 aaPredicted RBP11.04□□□□□ -0.64
MSH4-201ENST00000263187 THEMISQ8N1K5 641 aaPredicted RBP11.04□□□□□ -0.64
MSH4-201ENST00000263187 CHD2O14647 1828 aaKnown RBP11.04□□□□□ -0.64
MSH4-201ENST00000263187 PLEKHG1Q9ULL1 1385 aa11.04□□□□□ -0.64
MSH4-201ENST00000263187 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.04□□□□□ -0.64
MSH4-201ENST00000263187 LARGE1O95461 756 aa11.04□□□□□ -0.64
MSH4-201ENST00000263187 SIL1Q9H173 461 aa11.04□□□□□ -0.64
MSH4-201ENST00000263187 PTPRUQ92729 1446 aa11.04□□□□□ -0.64
MSH4-201ENST00000263187 NWD1Q149M9 1564 aa11.03□□□□□ -0.64
MSH4-201ENST00000263187 KCNA6P17658 529 aa11.03□□□□□ -0.64
MSH4-201ENST00000263187 CASTP20810 708 aaKnown RBP11.03□□□□□ -0.64
MSH4-201ENST00000263187 AK2P54819 239 aa11.03□□□□□ -0.64
MSH4-201ENST00000263187 CWF19L2Q2TBE0 894 aaKnown RBP11.03□□□□□ -0.64
MSH4-201ENST00000263187 CCDC83Q8IWF9 413 aa11.03□□□□□ -0.64
MSH4-201ENST00000263187 NECAB1Q8N987 351 aa11.03□□□□□ -0.64
MSH4-201ENST00000263187 IGSF1Q8N6C5 1336 aa11.03□□□□□ -0.64
MSH4-201ENST00000263187 STRCP1A6NGW2 1772 aa11.03□□□□□ -0.64
MSH4-201ENST00000263187 ADAMTS13Q76LX8 1427 aa11.03□□□□□ -0.64
MSH4-201ENST00000263187 USP25Q9UHP3 1055 aa11.03□□□□□ -0.64
MSH4-201ENST00000263187 SBNO1A3KN83 1393 aa11.03□□□□□ -0.64
MSH4-201ENST00000263187 DNTTIP2Q5QJE6 756 aaKnown RBP11.03□□□□□ -0.64
MSH4-201ENST00000263187 NBPF6Q5VWK0 638 aa11.03□□□□□ -0.64
MSH4-201ENST00000263187 PRPF40BQ6NWY9 871 aaKnown RBP11.03□□□□□ -0.64
MSH4-201ENST00000263187 NBPF4Q96M43 638 aa11.03□□□□□ -0.64
MSH4-201ENST00000263187 TSPY26PQ9H489 355 aa11.03□□□□□ -0.64
MSH4-201ENST00000263187 SNX14Q9Y5W7 946 aa11.03□□□□□ -0.64
MSH4-201ENST00000263187 XRN1Q8IZH2 1706 aaKnown RBP11.02□□□□□ -0.64
MSH4-201ENST00000263187 PROSER3Q2NL68 480 aa11.02□□□□□ -0.65
MSH4-201ENST00000263187 ADCK5Q3MIX3 580 aa11.02□□□□□ -0.65
MSH4-201ENST00000263187 FAM173BQ6P4H8 233 aa11.02□□□□□ -0.65
MSH4-201ENST00000263187 FERMT3Q86UX7 667 aa11.02□□□□□ -0.65
MSH4-201ENST00000263187 TSC1Q92574 1164 aa11.02□□□□□ -0.65
MSH4-201ENST00000263187 ARHGEF10O15013 1369 aa11.02□□□□□ -0.65
MSH4-201ENST00000263187 VPS37CA5D8V6 355 aaPredicted RBP11.02□□□□□ -0.65
MSH4-201ENST00000263187 FAM177BA6PVY3 158 aa11.02□□□□□ -0.65
MSH4-201ENST00000263187 KCNJ4P48050 445 aa11.02□□□□□ -0.65
MSH4-201ENST00000263187 PIP4K2AP48426 406 aaPredicted RBP11.02□□□□□ -0.65
MSH4-201ENST00000263187 PTH1RQ03431 593 aa11.02□□□□□ -0.65
MSH4-201ENST00000263187 KLHDC4Q8TBB5 520 aa11.02□□□□□ -0.65
MSH4-201ENST00000263187 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.02□□□□□ -0.65
MSH4-201ENST00000263187 OFD1O75665 1012 aa11.01□□□□□ -0.65
MSH4-201ENST00000263187 HCLS1P14317 486 aaPredicted RBP11.01□□□□□ -0.65
MSH4-201ENST00000263187 PI4K2BQ8TCG2 481 aa11.01□□□□□ -0.65
MSH4-201ENST00000263187 C9orf78Q9NZ63 289 aaPredicted RBP11.01□□□□□ -0.65
MSH4-201ENST00000263187 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.01□□□□□ -0.65
MSH4-201ENST00000263187 TEFQ10587 303 aa11.01□□□□□ -0.65
MSH4-201ENST00000263187 CUL4AQ13619 759 aa11.01□□□□□ -0.65
MSH4-201ENST00000263187 RUFY3Q7L099 469 aa11.01□□□□□ -0.65
MSH4-201ENST00000263187 JAKMIP1Q96N16 626 aaKnown RBP11.01□□□□□ -0.65
MSH4-201ENST00000263187 CCDC8Q9H0W5 538 aaPredicted RBP11.01□□□□□ -0.65
MSH4-201ENST00000263187 DIAPH3Q9NSV4 1193 aa11.01□□□□□ -0.65
MSH4-201ENST00000263187 HSPA4P34932 840 aa11.01□□□□□ -0.65
MSH4-201ENST00000263187 GIMAP6Q6P9H5 292 aa11.01□□□□□ -0.65
MSH4-201ENST00000263187 SIRT1Q96EB6 747 aa11.01□□□□□ -0.65
MSH4-201ENST00000263187 TTC12Q9H892 705 aaPredicted RBP11.01□□□□□ -0.65
MSH4-201ENST00000263187 NOL7Q9UMY1 257 aaKnown RBP11.01□□□□□ -0.65
MSH4-201ENST00000263187 NDUFB9Q9Y6M9 179 aa11.01□□□□□ -0.65
MSH4-201ENST00000263187 MAP3K5Q99683 1374 aa11□□□□□ -0.65
MSH4-201ENST00000263187 BTBD11A6QL63 1104 aa11□□□□□ -0.65
MSH4-201ENST00000263187 MBD3O95983 291 aa11□□□□□ -0.65
MSH4-201ENST00000263187 SYT1P21579 422 aa11□□□□□ -0.65
MSH4-201ENST00000263187 SSH3Q8TE77 659 aa11□□□□□ -0.65
MSH4-201ENST00000263187 DNAAF4Q8WXU2 420 aa11□□□□□ -0.65
MSH4-201ENST00000263187 SMC3Q9UQE7 1217 aa11□□□□□ -0.65
MSH4-201ENST00000263187 ITSN1Q15811 1721 aa11□□□□□ -0.65
MSH4-201ENST00000263187 MON2Q7Z3U7 1717 aa11□□□□□ -0.65
MSH4-201ENST00000263187 NPHP4O75161 1426 aaPredicted RBP11□□□□□ -0.65
MSH4-201ENST00000263187 USP31Q70CQ4 1352 aa11□□□□□ -0.65
MSH4-201ENST00000263187 PPFIA3O75145 1194 aa11□□□□□ -0.65
MSH4-201ENST00000263187 MCM2P49736 904 aa11□□□□□ -0.65
MSH4-201ENST00000263187 BCL11BQ9C0K0 894 aaPredicted RBP11□□□□□ -0.65
MSH4-201ENST00000263187 STAP2Q9UGK3 403 aa11□□□□□ -0.65
MSH4-201ENST00000263187 UQCRHLA0A096LP55 91 aa10.99□□□□□ -0.65
MSH4-201ENST00000263187 SGSM2O43147 1006 aa10.99□□□□□ -0.65
MSH4-201ENST00000263187 UQCRHP07919 91 aa10.99□□□□□ -0.65
MSH4-201ENST00000263187 DNM1Q05193 864 aaKnown RBP10.99□□□□□ -0.65
MSH4-201ENST00000263187 STK3Q13188 491 aa10.99□□□□□ -0.65
MSH4-201ENST00000263187 ZNF530Q6P9A1 599 aaPredicted RBP10.99□□□□□ -0.65
MSH4-201ENST00000263187 CNTROBQ8N137 903 aa10.99□□□□□ -0.65
MSH4-201ENST00000263187 ZKSCAN5Q9Y2L8 839 aa10.99□□□□□ -0.65
MSH4-201ENST00000263187 MAP3K2Q9Y2U5 619 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms