RNA–Protein interactions for RNA: ENST00000261726.10

CUX2-201, Transcript of cut like homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CUX2, Length 6,844 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-201ENST00000261726 MYZAPP0CAP1 466 aa16.59■□□□□ 0.25
CUX2-201ENST00000261726 SPTY2D1Q68D10 685 aaPredicted RBP16.59■□□□□ 0.25
CUX2-201ENST00000261726 ZNF287Q9HBT7 754 aa16.59■□□□□ 0.25
CUX2-201ENST00000261726 TOP1P11387 765 aaKnown RBP16.58■□□□□ 0.25
CUX2-201ENST00000261726 MAP9Q49MG5 647 aa16.58■□□□□ 0.25
CUX2-201ENST00000261726 STAC3Q96MF2 364 aa16.58■□□□□ 0.25
CUX2-201ENST00000261726 EPRSP07814 1512 aaKnown RBP16.58■□□□□ 0.25
CUX2-201ENST00000261726 ARHGAP5Q13017 1502 aa16.58■□□□□ 0.25
CUX2-201ENST00000261726 SMARCA5O60264 1052 aaPredicted RBP16.58■□□□□ 0.24
CUX2-201ENST00000261726 CAVIN4Q5BKX8 364 aa16.58■□□□□ 0.24
CUX2-201ENST00000261726 FERMT2Q96AC1 680 aa16.58■□□□□ 0.24
CUX2-201ENST00000261726 SERPINA10Q9UK55 444 aa16.58■□□□□ 0.24
CUX2-201ENST00000261726 POLR3GO15318 223 aaPredicted RBP16.58■□□□□ 0.24
CUX2-201ENST00000261726 RANBP6O60518 1105 aaKnown RBP16.58■□□□□ 0.24
CUX2-201ENST00000261726 DZIP1Q86YF9 867 aaKnown RBP16.58■□□□□ 0.24
CUX2-201ENST00000261726 CUL5Q93034 780 aa16.57■□□□□ 0.24
CUX2-201ENST00000261726 BOLA2Q9H3K6 86 aa16.57■□□□□ 0.24
CUX2-201ENST00000261726 U3KPZ7 1027 aaPredicted RBP16.57■□□□□ 0.24
CUX2-201ENST00000261726 SMC1AQ14683 1233 aaKnown RBP16.57■□□□□ 0.24
CUX2-201ENST00000261726 NAPBQ9H115 298 aa16.57■□□□□ 0.24
CUX2-201ENST00000261726 ZNF219Q9P2Y4 722 aaPredicted RBP16.57■□□□□ 0.24
CUX2-201ENST00000261726 ANKRD50Q9ULJ7 1429 aa16.57■□□□□ 0.24
CUX2-201ENST00000261726 MCM4P33991 863 aa16.56■□□□□ 0.24
CUX2-201ENST00000261726 GRIPAP1Q4V328 841 aa16.56■□□□□ 0.24
CUX2-201ENST00000261726 ESPNB1AK53 854 aa16.56■□□□□ 0.24
CUX2-201ENST00000261726 TRMT1Q9NXH9 659 aaKnown RBP16.56■□□□□ 0.24
CUX2-201ENST00000261726 PTCD1O75127 700 aaKnown RBP16.56■□□□□ 0.24
CUX2-201ENST00000261726 STARD3NLO95772 234 aa16.56■□□□□ 0.24
CUX2-201ENST00000261726 ZC3H6P61129 1189 aaKnown RBP16.56■□□□□ 0.24
CUX2-201ENST00000261726 ANO10Q9NW15 660 aa16.56■□□□□ 0.24
CUX2-201ENST00000261726 PRPF4BQ13523 1007 aaKnown RBP16.55■□□□□ 0.24
CUX2-201ENST00000261726 NBPF1Q3BBV0 1214 aa16.55■□□□□ 0.24
CUX2-201ENST00000261726 SPECC1Q5M775 1068 aa16.55■□□□□ 0.24
CUX2-201ENST00000261726 TMCO5BA8MYB1 307 aa16.55■□□□□ 0.24
CUX2-201ENST00000261726 TMEM266Q2M3C6 531 aa16.55■□□□□ 0.24
CUX2-201ENST00000261726 PPM1EQ8WY54 764 aa16.55■□□□□ 0.24
CUX2-201ENST00000261726 TRERF1Q96PN7 1200 aa16.55■□□□□ 0.24
CUX2-201ENST00000261726 BACH2Q9BYV9 841 aa16.55■□□□□ 0.24
CUX2-201ENST00000261726 ZNF444Q8N0Y2 327 aaPredicted RBP16.55■□□□□ 0.24
CUX2-201ENST00000261726 C8orf76Q96K31 380 aa16.55■□□□□ 0.24
CUX2-201ENST00000261726 CLIP2Q9UDT6 1046 aa16.55■□□□□ 0.24
CUX2-201ENST00000261726 ZPR1O75312 459 aa16.55■□□□□ 0.24
CUX2-201ENST00000261726 HLTFQ14527 1009 aaKnown RBP eCLIP16.55■□□□□ 0.24
CUX2-201ENST00000261726 DRC1Q96MC2 740 aa16.55■□□□□ 0.24
CUX2-201ENST00000261726 ZNF692Q9BU19 519 aaPredicted RBP16.55■□□□□ 0.24
CUX2-201ENST00000261726 MYD88Q99836 296 aa16.55■□□□□ 0.24
CUX2-201ENST00000261726 WDR63Q8IWG1 891 aa16.54■□□□□ 0.24
CUX2-201ENST00000261726 CTCFLQ8NI51 663 aaPredicted RBP16.54■□□□□ 0.24
CUX2-201ENST00000261726 IFIT1P09914 478 aaKnown RBP16.54■□□□□ 0.24
CUX2-201ENST00000261726 AKAP2Q9Y2D5 859 aa16.54■□□□□ 0.24
CUX2-201ENST00000261726 USO1O60763 962 aaKnown RBP16.54■□□□□ 0.24
CUX2-201ENST00000261726 PAFAH1B1P43034 410 aa16.54■□□□□ 0.24
CUX2-201ENST00000261726 NLRP5P59047 1200 aa16.54■□□□□ 0.24
CUX2-201ENST00000261726 SLC12A7Q9Y666 1083 aa16.54■□□□□ 0.24
CUX2-201ENST00000261726 SCAPERQ9BY12 1400 aa16.54■□□□□ 0.24
CUX2-201ENST00000261726 KIF18AQ8NI77 898 aa16.53■□□□□ 0.24
CUX2-201ENST00000261726 PUF60Q9UHX1 559 aaKnown RBP16.53■□□□□ 0.24
CUX2-201ENST00000261726 AFAP1Q8N556 730 aa16.53■□□□□ 0.24
CUX2-201ENST00000261726 HOMER2Q9NSB8 354 aa16.53■□□□□ 0.24
CUX2-201ENST00000261726 FGFR1OPO95684 399 aaKnown RBP16.53■□□□□ 0.24
CUX2-201ENST00000261726 SLC4A8Q2Y0W8 1093 aa16.53■□□□□ 0.24
CUX2-201ENST00000261726 TMEM57Q8N5G2 664 aa16.53■□□□□ 0.24
CUX2-201ENST00000261726 ADAMTS12P58397 1594 aa16.53■□□□□ 0.24
CUX2-201ENST00000261726 RTEL1-TNFRSF6BF6WH68 1400 aa16.53■□□□□ 0.24
CUX2-201ENST00000261726 SSRP1Q08945 709 aaKnown RBP16.53■□□□□ 0.24
CUX2-201ENST00000261726 TCERG1LQ5VWI1 586 aa16.53■□□□□ 0.24
CUX2-201ENST00000261726 EIF4G3O43432 1585 aaKnown RBP16.53■□□□□ 0.24
CUX2-201ENST00000261726 GNAT3A8MTJ3 354 aa16.53■□□□□ 0.24
CUX2-201ENST00000261726 CNNM3Q8NE01 707 aa16.53■□□□□ 0.24
CUX2-201ENST00000261726 LARP6Q9BRS8 491 aaKnown RBP16.53■□□□□ 0.24
CUX2-201ENST00000261726 MCM3P25205 808 aa16.52■□□□□ 0.24
CUX2-201ENST00000261726 PLB1Q6P1J6 1458 aa16.52■□□□□ 0.24
CUX2-201ENST00000261726 MTIF2P46199 727 aaKnown RBP16.52■□□□□ 0.24
CUX2-201ENST00000261726 CKAP2LQ8IYA6 745 aa16.52■□□□□ 0.24
CUX2-201ENST00000261726 RAB34Q9BZG1 259 aa16.52■□□□□ 0.24
CUX2-201ENST00000261726 CCDC183Q5T5S1 534 aa16.52■□□□□ 0.24
CUX2-201ENST00000261726 ZNF652Q9Y2D9 606 aa16.52■□□□□ 0.24
CUX2-201ENST00000261726 YEATS4O95619 227 aa16.52■□□□□ 0.23
CUX2-201ENST00000261726 CCDC144CPQ8IYA2 1237 aa16.52■□□□□ 0.23
CUX2-201ENST00000261726 CCDC175P0C221 793 aa16.52■□□□□ 0.23
CUX2-201ENST00000261726 MX1P20591 662 aa16.52■□□□□ 0.23
CUX2-201ENST00000261726 WDHD1O75717 1129 aaPredicted RBP16.51■□□□□ 0.23
CUX2-201ENST00000261726 CCT2P78371 535 aaKnown RBP16.51■□□□□ 0.23
CUX2-201ENST00000261726 MMRN2Q9H8L6 949 aa16.51■□□□□ 0.23
CUX2-201ENST00000261726 CCDC194A0A1B0GVG4 234 aa16.51■□□□□ 0.23
CUX2-201ENST00000261726 KIF1BPQ96EK5 621 aa16.51■□□□□ 0.23
CUX2-201ENST00000261726 KIF2AO00139 706 aaPredicted RBP16.51■□□□□ 0.23
CUX2-201ENST00000261726 CCDC196A0A1B0GTZ2 297 aa16.5■□□□□ 0.23
CUX2-201ENST00000261726 PRC1O43663 620 aa16.5■□□□□ 0.23
CUX2-201ENST00000261726 CA8P35219 290 aa16.5■□□□□ 0.23
CUX2-201ENST00000261726 PHAXQ9H814 394 aaKnown RBP16.5■□□□□ 0.23
CUX2-201ENST00000261726 CIZ1Q9ULV3 898 aaPredicted RBP16.5■□□□□ 0.23
CUX2-201ENST00000261726 PTPN23Q9H3S7 1636 aa16.5■□□□□ 0.23
CUX2-201ENST00000261726 BIN1O00499 593 aa16.5■□□□□ 0.23
CUX2-201ENST00000261726 PABPN1LA6NDY0 278 aaKnown RBP16.5■□□□□ 0.23
CUX2-201ENST00000261726 NOP2P46087 812 aaKnown RBP16.5■□□□□ 0.23
CUX2-201ENST00000261726 MCM10Q7L590 875 aa16.5■□□□□ 0.23
CUX2-201ENST00000261726 MAATS1Q7Z4T9 603 aa16.5■□□□□ 0.23
CUX2-201ENST00000261726 TAOK3Q9H2K8 898 aa16.5■□□□□ 0.23
CUX2-201ENST00000261726 VAT1LQ9HCJ6 419 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms