RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 TTC22Q5TAA0 569 aa28.83■■■□□ 2.21
MSX2-201ENST00000239243 HDAC5Q9UQL6 1122 aa28.83■■■□□ 2.21
MSX2-201ENST00000239243 PRAMEF22A3QJZ6 481 aa28.82■■■□□ 2.2
MSX2-201ENST00000239243 CDC45O75419 566 aa28.82■■■□□ 2.2
MSX2-201ENST00000239243 EVA1CP58658 441 aa28.82■■■□□ 2.2
MSX2-201ENST00000239243 FMNL2Q96PY5 1086 aa28.82■■■□□ 2.2
MSX2-201ENST00000239243 PNMA6EA0A0J9YXQ4 647 aa28.81■■■□□ 2.2
MSX2-201ENST00000239243 SNRPA1P09661 255 aaKnown RBP28.81■■■□□ 2.2
MSX2-201ENST00000239243 PROSER3Q2NL68 480 aa28.81■■■□□ 2.2
MSX2-201ENST00000239243 MAP3K2Q9Y2U5 619 aa28.81■■■□□ 2.2
MSX2-201ENST00000239243 APBB1O00213 710 aa28.81■■■□□ 2.2
MSX2-201ENST00000239243 LRRCC1Q9C099 1032 aa28.81■■■□□ 2.2
MSX2-201ENST00000239243 ZNF496Q96IT1 587 aaPredicted RBP28.8■■■□□ 2.2
MSX2-201ENST00000239243 SMARCA5O60264 1052 aaPredicted RBP28.79■■■□□ 2.2
MSX2-201ENST00000239243 GSPT1P15170 499 aaKnown RBP28.79■■■□□ 2.2
MSX2-201ENST00000239243 C16orf71Q8IYS4 520 aaPredicted RBP28.79■■■□□ 2.2
MSX2-201ENST00000239243 SSH3Q8TE77 659 aa28.79■■■□□ 2.2
MSX2-201ENST00000239243 IBTKQ9P2D0 1353 aaPredicted RBP28.79■■■□□ 2.2
MSX2-201ENST00000239243 PDIA6Q15084 440 aa28.78■■■□□ 2.2
MSX2-201ENST00000239243 EXOC6BQ9Y2D4 811 aa28.78■■■□□ 2.2
MSX2-201ENST00000239243 ERVV-2B6SEH9 535 aa28.78■■■□□ 2.2
MSX2-201ENST00000239243 TBC1D9Q6ZT07 1266 aa28.78■■■□□ 2.2
MSX2-201ENST00000239243 OSBPL3Q9H4L5 887 aa28.78■■■□□ 2.2
MSX2-201ENST00000239243 STRN4Q9NRL3 753 aa28.78■■■□□ 2.2
MSX2-201ENST00000239243 SLC4A3P48751 1232 aa28.77■■■□□ 2.2
MSX2-201ENST00000239243 NKX1-1Q15270 411 aaPredicted RBP28.77■■■□□ 2.2
MSX2-201ENST00000239243 AHDC1Q5TGY3 1603 aaPredicted RBP28.77■■■□□ 2.2
MSX2-201ENST00000239243 ROBO1Q9Y6N7 1651 aa28.77■■■□□ 2.2
MSX2-201ENST00000239243 LARP1Q6PKG0 1096 aaKnown RBP28.76■■■□□ 2.19
MSX2-201ENST00000239243 LINS1Q8NG48 757 aa28.76■■■□□ 2.19
MSX2-201ENST00000239243 NBPF7P0C2Y1 421 aaPredicted RBP28.75■■■□□ 2.19
MSX2-201ENST00000239243 RBM25P49756 843 aaKnown RBP28.75■■■□□ 2.19
MSX2-201ENST00000239243 POLA2Q14181 598 aa28.75■■■□□ 2.19
MSX2-201ENST00000239243 RAB11FIP3O75154 756 aa28.74■■■□□ 2.19
MSX2-201ENST00000239243 OTUD7AQ8TE49 926 aaPredicted RBP28.74■■■□□ 2.19
MSX2-201ENST00000239243 LAMB4A4D0S4 1761 aa28.74■■■□□ 2.19
MSX2-201ENST00000239243 PPP1R42Q7Z4L9 355 aa28.74■■■□□ 2.19
MSX2-201ENST00000239243 C9orf78Q9NZ63 289 aaPredicted RBP28.74■■■□□ 2.19
MSX2-201ENST00000239243 BCL11AQ9H165 835 aa28.73■■■□□ 2.19
MSX2-201ENST00000239243 COL14A1Q05707 1796 aaKnown RBP28.73■■■□□ 2.19
MSX2-201ENST00000239243 COL22A1Q8NFW1 1626 aaPredicted RBP28.72■■■□□ 2.19
MSX2-201ENST00000239243 SHANK3Q9BYB0 1731 aa28.72■■■□□ 2.19
MSX2-201ENST00000239243 CASC1Q6TDU7 716 aa28.72■■■□□ 2.19
MSX2-201ENST00000239243 PDE1AP54750 535 aa28.71■■■□□ 2.19
MSX2-201ENST00000239243 SRGAP3O43295 1099 aa28.71■■■□□ 2.19
MSX2-201ENST00000239243 AIMP1Q12904 312 aaKnown RBP28.71■■■□□ 2.19
MSX2-201ENST00000239243 MTX1Q13505 466 aa28.71■■■□□ 2.19
MSX2-201ENST00000239243 RIC3Q7Z5B4 369 aa28.71■■■□□ 2.19
MSX2-201ENST00000239243 NEXNQ0ZGT2 675 aa28.7■■■□□ 2.19
MSX2-201ENST00000239243 HSP90AB4PQ58FF6 505 aa28.7■■■□□ 2.19
MSX2-201ENST00000239243 ERBB4Q15303 1308 aa28.7■■■□□ 2.18
MSX2-201ENST00000239243 MYL6BP14649 208 aa28.69■■■□□ 2.18
MSX2-201ENST00000239243 SALL3Q9BXA9 1300 aa28.69■■■□□ 2.18
MSX2-201ENST00000239243 GLI3P10071 1580 aa28.69■■■□□ 2.18
MSX2-201ENST00000239243 USP16Q9Y5T5 823 aa28.69■■■□□ 2.18
MSX2-201ENST00000239243 UBR2Q8IWV8 1755 aa28.69■■■□□ 2.18
MSX2-201ENST00000239243 UTYO14607 1347 aa28.68■■■□□ 2.18
MSX2-201ENST00000239243 PAPPAQ13219 1627 aa28.68■■■□□ 2.18
MSX2-201ENST00000239243 SDSP20132 328 aa28.68■■■□□ 2.18
MSX2-201ENST00000239243 BTG4Q9NY30 223 aa28.68■■■□□ 2.18
MSX2-201ENST00000239243 SURF6O75683 361 aaKnown RBP28.67■■■□□ 2.18
MSX2-201ENST00000239243 XAGE3Q8WTP9 111 aa28.67■■■□□ 2.18
MSX2-201ENST00000239243 LTBP4Q8N2S1 1624 aa28.67■■■□□ 2.18
MSX2-201ENST00000239243 GRM8O00222 908 aa28.67■■■□□ 2.18
MSX2-201ENST00000239243 MX1P20591 662 aa28.67■■■□□ 2.18
MSX2-201ENST00000239243 NBR1Q14596 966 aa28.66■■■□□ 2.18
MSX2-201ENST00000239243 CWF19L2Q2TBE0 894 aaKnown RBP28.66■■■□□ 2.18
MSX2-201ENST00000239243 COPS6Q7L5N1 327 aa28.66■■■□□ 2.18
MSX2-201ENST00000239243 DDX54Q8TDD1 881 aaKnown RBP28.66■■■□□ 2.18
MSX2-201ENST00000239243 AOX1Q06278 1338 aa28.66■■■□□ 2.18
MSX2-201ENST00000239243 KIF1BPQ96EK5 621 aa28.65■■■□□ 2.18
MSX2-201ENST00000239243 LRP10Q7Z4F1 713 aa28.65■■■□□ 2.18
MSX2-201ENST00000239243 METTL22Q9BUU2 404 aaPredicted RBP28.65■■■□□ 2.18
MSX2-201ENST00000239243 TBC1D2Q9BYX2 928 aa28.65■■■□□ 2.18
MSX2-201ENST00000239243 STAP2Q9UGK3 403 aa28.65■■■□□ 2.18
MSX2-201ENST00000239243 ANKRD13DQ6ZTN6 518 aa28.64■■■□□ 2.18
MSX2-201ENST00000239243 RTL5Q5HYW3 569 aaPredicted RBP28.62■■■□□ 2.17
MSX2-201ENST00000239243 USP35Q9P2H5 1018 aa28.62■■■□□ 2.17
MSX2-201ENST00000239243 RHPN1Q8TCX5 695 aa28.62■■■□□ 2.17
MSX2-201ENST00000239243 KCPQ6ZWJ8 1503 aa28.62■■■□□ 2.17
MSX2-201ENST00000239243 IGKV5-2P06315 115 aa28.61■■■□□ 2.17
MSX2-201ENST00000239243 TNS2Q63HR2 1409 aa28.6■■■□□ 2.17
MSX2-201ENST00000239243 NEURL1BA8MQ27 555 aa28.6■■■□□ 2.17
MSX2-201ENST00000239243 COL16A1Q07092 1604 aaPredicted RBP28.6■■■□□ 2.17
MSX2-201ENST00000239243 PLCH1Q4KWH8 1693 aa28.59■■■□□ 2.17
MSX2-201ENST00000239243 TUBGCP6Q96RT7 1819 aa28.59■■■□□ 2.17
MSX2-201ENST00000239243 ERC1Q8IUD2 1116 aa28.58■■■□□ 2.17
MSX2-201ENST00000239243 MYD88Q99836 296 aa28.58■■■□□ 2.17
MSX2-201ENST00000239243 GCKRQ14397 625 aa28.58■■■□□ 2.17
MSX2-201ENST00000239243 HSCBQ8IWL3 235 aa28.58■■■□□ 2.17
MSX2-201ENST00000239243 TMOD3Q9NYL9 352 aa28.58■■■□□ 2.17
MSX2-201ENST00000239243 ARFGEF2Q9Y6D5 1785 aa28.57■■■□□ 2.16
MSX2-201ENST00000239243 DISP2A7MBM2 1401 aa28.57■■■□□ 2.16
MSX2-201ENST00000239243 TOGARAM1Q9Y4F4 1720 aa28.57■■■□□ 2.16
MSX2-201ENST00000239243 IL1RAPL2Q9NP60 686 aa28.57■■■□□ 2.16
MSX2-201ENST00000239243 PLBD2Q8NHP8 589 aa28.57■■■□□ 2.16
MSX2-201ENST00000239243 SNX21Q969T3 373 aa28.57■■■□□ 2.16
MSX2-201ENST00000239243 REC8O95072 547 aa28.56■■■□□ 2.16
MSX2-201ENST00000239243 OS9Q13438 667 aaPredicted RBP28.56■■■□□ 2.16
MSX2-201ENST00000239243 SUCLG2Q96I99 432 aa28.56■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms