RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 C8orf34Q49A92 452 aa18.65■□□□□ 0.58
CCDC47-201ENST00000225726 ANXA1P04083 346 aa18.64■□□□□ 0.57
CCDC47-201ENST00000225726 DNAAF4Q8WXU2 420 aa18.64■□□□□ 0.57
CCDC47-201ENST00000225726 ADCY9O60503 1353 aa18.64■□□□□ 0.57
CCDC47-201ENST00000225726 ADAMTS2O95450 1211 aa18.64■□□□□ 0.57
CCDC47-201ENST00000225726 GNAI2P04899 355 aa18.64■□□□□ 0.57
CCDC47-201ENST00000225726 PROSER3Q2NL68 480 aa18.64■□□□□ 0.57
CCDC47-201ENST00000225726 CHD1LQ86WJ1 897 aa18.63■□□□□ 0.57
CCDC47-201ENST00000225726 SRCIN1Q9C0H9 1055 aa18.63■□□□□ 0.57
CCDC47-201ENST00000225726 PI4KAP2A4QPH2 592 aa18.62■□□□□ 0.57
CCDC47-201ENST00000225726 PDIA6Q15084 440 aa18.62■□□□□ 0.57
CCDC47-201ENST00000225726 PI4KAP1Q8N8J0 262 aa18.62■□□□□ 0.57
CCDC47-201ENST00000225726 DCTPP1Q9H773 170 aa18.62■□□□□ 0.57
CCDC47-201ENST00000225726 LRP6O75581 1613 aa18.62■□□□□ 0.57
CCDC47-201ENST00000225726 KCPQ6ZWJ8 1503 aa18.62■□□□□ 0.57
CCDC47-201ENST00000225726 TNS2Q63HR2 1409 aa18.61■□□□□ 0.57
CCDC47-201ENST00000225726 BEND3Q5T5X7 828 aa18.61■□□□□ 0.57
CCDC47-201ENST00000225726 KSR2Q6VAB6 950 aa18.61■□□□□ 0.57
CCDC47-201ENST00000225726 HMMRO75330 724 aa18.61■□□□□ 0.57
CCDC47-201ENST00000225726 NUTM2BA6NNL0 878 aaPredicted RBP18.6■□□□□ 0.57
CCDC47-201ENST00000225726 NUTM2EB1AL46 878 aaPredicted RBP18.6■□□□□ 0.57
CCDC47-201ENST00000225726 DDX58O95786 925 aaKnown RBP18.6■□□□□ 0.57
CCDC47-201ENST00000225726 ANKRD45Q5TZF3 282 aa18.6■□□□□ 0.57
CCDC47-201ENST00000225726 NUTM2AQ8IVF1 878 aaPredicted RBP18.6■□□□□ 0.57
CCDC47-201ENST00000225726 CDCA7Q9BWT1 371 aaPredicted RBP18.6■□□□□ 0.57
CCDC47-201ENST00000225726 SLIT2O94813 1529 aa18.6■□□□□ 0.57
CCDC47-201ENST00000225726 USP44Q9H0E7 712 aa18.6■□□□□ 0.57
CCDC47-201ENST00000225726 THRAP3Q9Y2W1 955 aaKnown RBP18.6■□□□□ 0.57
CCDC47-201ENST00000225726 LNPKQ9C0E8 428 aa18.59■□□□□ 0.57
CCDC47-201ENST00000225726 SPATA31A1Q5TZJ5 1347 aa18.59■□□□□ 0.57
CCDC47-201ENST00000225726 MAP3K2Q9Y2U5 619 aa18.59■□□□□ 0.57
CCDC47-201ENST00000225726 USP16Q9Y5T5 823 aa18.59■□□□□ 0.57
CCDC47-201ENST00000225726 UBTFL1P0CB47 393 aaPredicted RBP18.58■□□□□ 0.56
CCDC47-201ENST00000225726 TMOD3Q9NYL9 352 aa18.58■□□□□ 0.56
CCDC47-201ENST00000225726 JCADQ9P266 1359 aa18.58■□□□□ 0.56
CCDC47-201ENST00000225726 ALDH1L1O75891 902 aa18.58■□□□□ 0.56
CCDC47-201ENST00000225726 ITGB4P16144 1822 aa18.58■□□□□ 0.56
CCDC47-201ENST00000225726 ERBB4Q15303 1308 aa18.57■□□□□ 0.56
CCDC47-201ENST00000225726 EXOC5O00471 708 aa18.57■□□□□ 0.56
CCDC47-201ENST00000225726 ANP32AP39687 249 aaKnown RBP18.56■□□□□ 0.56
CCDC47-201ENST00000225726 ATP8B2P98198 1209 aa18.56■□□□□ 0.56
CCDC47-201ENST00000225726 LRRFIP2Q9Y608 721 aaKnown RBP18.56■□□□□ 0.56
CCDC47-201ENST00000225726 MYL6BP14649 208 aa18.55■□□□□ 0.56
CCDC47-201ENST00000225726 LRP10Q7Z4F1 713 aa18.55■□□□□ 0.56
CCDC47-201ENST00000225726 AEBP2Q6ZN18 517 aaPredicted RBP18.55■□□□□ 0.56
CCDC47-201ENST00000225726 SPATA31A5Q5VU36 1347 aa18.55■□□□□ 0.56
CCDC47-201ENST00000225726 SPATA31A7Q8IWB4 1347 aa18.55■□□□□ 0.56
CCDC47-201ENST00000225726 IBTKQ9P2D0 1353 aaPredicted RBP18.55■□□□□ 0.56
CCDC47-201ENST00000225726 AIMP1Q12904 312 aaKnown RBP18.54■□□□□ 0.56
CCDC47-201ENST00000225726 XAGE3Q8WTP9 111 aa18.54■□□□□ 0.56
CCDC47-201ENST00000225726 ZBTB47Q9UFB7 747 aaPredicted RBP18.54■□□□□ 0.56
CCDC47-201ENST00000225726 LINS1Q8NG48 757 aa18.53■□□□□ 0.56
CCDC47-201ENST00000225726 COPS6Q7L5N1 327 aa18.53■□□□□ 0.56
CCDC47-201ENST00000225726 RIC3Q7Z5B4 369 aa18.53■□□□□ 0.56
CCDC47-201ENST00000225726 CERKQ8TCT0 537 aa18.53■□□□□ 0.56
CCDC47-201ENST00000225726 PIGBQ92521 554 aa18.53■□□□□ 0.56
CCDC47-201ENST00000225726 BARGINQ6ZT62 677 aa18.52■□□□□ 0.55
CCDC47-201ENST00000225726 BCL9O00512 1426 aa18.52■□□□□ 0.55
CCDC47-201ENST00000225726 ARFGEF2Q9Y6D5 1785 aa18.51■□□□□ 0.55
CCDC47-201ENST00000225726 NBR1Q14596 966 aa18.51■□□□□ 0.55
CCDC47-201ENST00000225726 DOT1LQ8TEK3 1739 aa18.51■□□□□ 0.55
CCDC47-201ENST00000225726 HDAC5Q9UQL6 1122 aa18.51■□□□□ 0.55
CCDC47-201ENST00000225726 PTCD1O75127 700 aaKnown RBP18.51■□□□□ 0.55
CCDC47-201ENST00000225726 NBPF7P0C2Y1 421 aaPredicted RBP18.51■□□□□ 0.55
CCDC47-201ENST00000225726 PNMA6EA0A0J9YXQ4 647 aa18.5■□□□□ 0.55
CCDC47-201ENST00000225726 NEXNQ0ZGT2 675 aa18.5■□□□□ 0.55
CCDC47-201ENST00000225726 DDB1Q16531 1140 aa18.5■□□□□ 0.55
CCDC47-201ENST00000225726 ANKRD13DQ6ZTN6 518 aa18.5■□□□□ 0.55
CCDC47-201ENST00000225726 NPM2Q86SE8 214 aaKnown RBP18.5■□□□□ 0.55
CCDC47-201ENST00000225726 UNC5CLQ8IV45 518 aa18.5■□□□□ 0.55
CCDC47-201ENST00000225726 VSIG10Q8N0Z9 540 aa18.5■□□□□ 0.55
CCDC47-201ENST00000225726 METTL22Q9BUU2 404 aaPredicted RBP18.5■□□□□ 0.55
CCDC47-201ENST00000225726 UTYO14607 1347 aa18.49■□□□□ 0.55
CCDC47-201ENST00000225726 SPATA31A6Q5VVP1 1343 aa18.49■□□□□ 0.55
CCDC47-201ENST00000225726 SSH3Q8TE77 659 aa18.49■□□□□ 0.55
CCDC47-201ENST00000225726 C9orf78Q9NZ63 289 aaPredicted RBP18.49■□□□□ 0.55
CCDC47-201ENST00000225726 CWF19L2Q2TBE0 894 aaKnown RBP18.49■□□□□ 0.55
CCDC47-201ENST00000225726 ATG3Q9NT62 314 aa18.49■□□□□ 0.55
CCDC47-201ENST00000225726 EIF5BO60841 1220 aaKnown RBP18.48■□□□□ 0.55
CCDC47-201ENST00000225726 PIP4K2AP48426 406 aaPredicted RBP18.48■□□□□ 0.55
CCDC47-201ENST00000225726 POLA2Q14181 598 aa18.48■□□□□ 0.55
CCDC47-201ENST00000225726 BMP2KLQ5H9B9 411 aa18.48■□□□□ 0.55
CCDC47-201ENST00000225726 TEX13AQ9BXU3 409 aaPredicted RBP18.48■□□□□ 0.55
CCDC47-201ENST00000225726 ASAP1Q9ULH1 1129 aa18.48■□□□□ 0.55
CCDC47-201ENST00000225726 CCDC9Q9Y3X0 531 aaKnown RBP18.48■□□□□ 0.55
CCDC47-201ENST00000225726 NBPF26B4DH59 902 aa18.48■□□□□ 0.55
CCDC47-201ENST00000225726 NBPF14Q5TI25 921 aa18.48■□□□□ 0.55
CCDC47-201ENST00000225726 NBPF10Q6P3W6 841 aaKnown RBP18.48■□□□□ 0.55
CCDC47-201ENST00000225726 NBPF15Q8N660 670 aa18.48■□□□□ 0.55
CCDC47-201ENST00000225726 IGKV5-2P06315 115 aa18.47■□□□□ 0.55
CCDC47-201ENST00000225726 PLBD2Q8NHP8 589 aa18.47■□□□□ 0.55
CCDC47-201ENST00000225726 NUP188Q5SRE5 1749 aa18.47■□□□□ 0.55
CCDC47-201ENST00000225726 GRM8O00222 908 aa18.47■□□□□ 0.55
CCDC47-201ENST00000225726 PLEKHM2Q8IWE5 1019 aa18.47■□□□□ 0.55
CCDC47-201ENST00000225726 AFDNP55196 1824 aaKnown RBP18.47■□□□□ 0.55
CCDC47-201ENST00000225726 BCL9LQ86UU0 1499 aa18.47■□□□□ 0.55
CCDC47-201ENST00000225726 PPP1R42Q7Z4L9 355 aa18.47■□□□□ 0.55
CCDC47-201ENST00000225726 MYD88Q99836 296 aa18.47■□□□□ 0.55
CCDC47-201ENST00000225726 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.47■□□□□ 0.55
CCDC47-201ENST00000225726 NEURL1BA8MQ27 555 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms