RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 FMN2Q9NZ56 1722 aa13.04□□□□□ -0.32
USP28-201ENST00000003302 PTH1RQ03431 593 aa13.04□□□□□ -0.32
USP28-201ENST00000003302 ST3GAL1Q11201 340 aa13.04□□□□□ -0.32
USP28-201ENST00000003302 CWF19L2Q2TBE0 894 aaKnown RBP13.04□□□□□ -0.32
USP28-201ENST00000003302 SKOR2Q2VWA4 1001 aaPredicted RBP13.04□□□□□ -0.32
USP28-201ENST00000003302 HDGFL1Q5TGJ6 251 aa13.04□□□□□ -0.32
USP28-201ENST00000003302 CNPY2Q9Y2B0 182 aa13.04□□□□□ -0.32
USP28-201ENST00000003302 FLT4P35916 1363 aa13.04□□□□□ -0.32
USP28-201ENST00000003302 KIF24Q5T7B8 1368 aa13.04□□□□□ -0.32
USP28-201ENST00000003302 REC8O95072 547 aa13.04□□□□□ -0.32
USP28-201ENST00000003302 TAF7Q15545 349 aaPredicted RBP13.04□□□□□ -0.32
USP28-201ENST00000003302 ABTB2Q8N961 1025 aa13.04□□□□□ -0.32
USP28-201ENST00000003302 FAM208AQ9UK61 1670 aaKnown RBP13.04□□□□□ -0.32
USP28-201ENST00000003302 RPAP1Q9BWH6 1393 aaPredicted RBP13.04□□□□□ -0.32
USP28-201ENST00000003302 SRGAP3O43295 1099 aa13.04□□□□□ -0.32
USP28-201ENST00000003302 GNAT3A8MTJ3 354 aa13.03□□□□□ -0.32
USP28-201ENST00000003302 NUCB2P80303 420 aa13.03□□□□□ -0.32
USP28-201ENST00000003302 RGPD2P0DJD1 1756 aa13.03□□□□□ -0.32
USP28-201ENST00000003302 EDC3Q96F86 508 aaKnown RBP13.03□□□□□ -0.32
USP28-201ENST00000003302 STK31Q9BXU1 1019 aa13.03□□□□□ -0.32
USP28-201ENST00000003302 MARF1Q9Y4F3 1742 aaKnown RBP13.03□□□□□ -0.32
USP28-201ENST00000003302 USP48Q86UV5 1035 aa13.03□□□□□ -0.32
USP28-201ENST00000003302 CHMP4BQ9H444 224 aaKnown RBP13.03□□□□□ -0.32
USP28-201ENST00000003302 AP5Z1O43299 807 aa13.03□□□□□ -0.32
USP28-201ENST00000003302 CCT4P50991 539 aaKnown RBP13.03□□□□□ -0.32
USP28-201ENST00000003302 PDLIM2Q96JY6 352 aa13.03□□□□□ -0.32
USP28-201ENST00000003302 SRCIN1Q9C0H9 1055 aa13.03□□□□□ -0.32
USP28-201ENST00000003302 TLR7Q9NYK1 1049 aaKnown RBP13.02□□□□□ -0.32
USP28-201ENST00000003302 R3HCC1Q9Y3T6 440 aaKnown RBP13.02□□□□□ -0.32
USP28-201ENST00000003302 GOLGA6L22H0YM25 854 aa13.02□□□□□ -0.33
USP28-201ENST00000003302 RUFY3Q7L099 469 aa13.02□□□□□ -0.33
USP28-201ENST00000003302 ZSCAN30Q86W11 494 aa13.02□□□□□ -0.33
USP28-201ENST00000003302 SBNO1A3KN83 1393 aa13.02□□□□□ -0.33
USP28-201ENST00000003302 CCDC173Q0VFZ6 552 aa13.02□□□□□ -0.33
USP28-201ENST00000003302 CUL4AQ13619 759 aa13.02□□□□□ -0.33
USP28-201ENST00000003302 ARHGEF10O15013 1369 aa13.01□□□□□ -0.33
USP28-201ENST00000003302 PPFIA3O75145 1194 aa13.01□□□□□ -0.33
USP28-201ENST00000003302 AK2P54819 239 aa13.01□□□□□ -0.33
USP28-201ENST00000003302 SLFNL1Q499Z3 407 aa13.01□□□□□ -0.33
USP28-201ENST00000003302 SNX14Q9Y5W7 946 aa13.01□□□□□ -0.33
USP28-201ENST00000003302 UBTFL1P0CB47 393 aaPredicted RBP13.01□□□□□ -0.33
USP28-201ENST00000003302 RHPN1Q8TCX5 695 aa13.01□□□□□ -0.33
USP28-201ENST00000003302 NECAB1Q8N987 351 aa13.01□□□□□ -0.33
USP28-201ENST00000003302 HMMRO75330 724 aa13□□□□□ -0.33
USP28-201ENST00000003302 CHMP3Q9Y3E7 222 aa13□□□□□ -0.33
USP28-201ENST00000003302 LRSAM1Q6UWE0 723 aa13□□□□□ -0.33
USP28-201ENST00000003302 SSH3Q8TE77 659 aa13□□□□□ -0.33
USP28-201ENST00000003302 KAZALD1Q96I82 304 aa12.99□□□□□ -0.33
USP28-201ENST00000003302 LSG1Q9H089 658 aaKnown RBP12.99□□□□□ -0.33
USP28-201ENST00000003302 ADCY9O60503 1353 aa12.99□□□□□ -0.33
USP28-201ENST00000003302 CCDC30Q5VVM6 783 aa12.99□□□□□ -0.33
USP28-201ENST00000003302 FAM227BQ96M60 508 aa12.99□□□□□ -0.33
USP28-201ENST00000003302 PXDNQ92626 1479 aa12.99□□□□□ -0.33
USP28-201ENST00000003302 HSP90AA2PQ14568 343 aaPredicted RBP12.99□□□□□ -0.33
USP28-201ENST00000003302 CASC1Q6TDU7 716 aa12.99□□□□□ -0.33
USP28-201ENST00000003302 HSPA4P34932 840 aa12.98□□□□□ -0.33
USP28-201ENST00000003302 FIBPO43427 364 aa12.98□□□□□ -0.33
USP28-201ENST00000003302 HCLS1P14317 486 aaPredicted RBP12.98□□□□□ -0.33
USP28-201ENST00000003302 BEND3Q5T5X7 828 aa12.98□□□□□ -0.33
USP28-201ENST00000003302 TTC12Q9H892 705 aaPredicted RBP12.98□□□□□ -0.33
USP28-201ENST00000003302 STAP2Q9UGK3 403 aa12.98□□□□□ -0.33
USP28-201ENST00000003302 USP25Q9UHP3 1055 aa12.98□□□□□ -0.33
USP28-201ENST00000003302 DIP2AQ14689 1571 aa12.98□□□□□ -0.33
USP28-201ENST00000003302 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.98□□□□□ -0.33
USP28-201ENST00000003302 EIF4A1P60842 406 aaKnown RBP12.98□□□□□ -0.33
USP28-201ENST00000003302 TTC14Q96N46 770 aa12.98□□□□□ -0.33
USP28-201ENST00000003302 SIL1Q9H173 461 aa12.98□□□□□ -0.33
USP28-201ENST00000003302 AXIN2Q9Y2T1 843 aa12.98□□□□□ -0.33
USP28-201ENST00000003302 SGSM2O43147 1006 aa12.97□□□□□ -0.33
USP28-201ENST00000003302 FERMT3Q86UX7 667 aa12.97□□□□□ -0.33
USP28-201ENST00000003302 SIRT1Q96EB6 747 aa12.97□□□□□ -0.33
USP28-201ENST00000003302 MAP3K5Q99683 1374 aa12.97□□□□□ -0.33
USP28-201ENST00000003302 VSIG10Q8N0Z9 540 aa12.97□□□□□ -0.33
USP28-201ENST00000003302 CWC22Q9HCG8 908 aaKnown RBP12.97□□□□□ -0.33
USP28-201ENST00000003302 SYT1P21579 422 aa12.97□□□□□ -0.33
USP28-201ENST00000003302 AIMP1Q12904 312 aaKnown RBP12.97□□□□□ -0.33
USP28-201ENST00000003302 CCDC83Q8IWF9 413 aa12.97□□□□□ -0.33
USP28-201ENST00000003302 SLC39A6Q13433 755 aa12.97□□□□□ -0.33
USP28-201ENST00000003302 GIMAP6Q6P9H5 292 aa12.97□□□□□ -0.33
USP28-201ENST00000003302 CASTP20810 708 aaKnown RBP12.96□□□□□ -0.33
USP28-201ENST00000003302 POLA2Q14181 598 aa12.96□□□□□ -0.33
USP28-201ENST00000003302 CCDC8Q9H0W5 538 aaPredicted RBP12.96□□□□□ -0.33
USP28-201ENST00000003302 ISY1Q9ULR0 285 aaKnown RBP12.96□□□□□ -0.33
USP28-201ENST00000003302 NOL7Q9UMY1 257 aaKnown RBP12.96□□□□□ -0.33
USP28-201ENST00000003302 CCDC9Q9Y3X0 531 aaKnown RBP12.96□□□□□ -0.33
USP28-201ENST00000003302 LRRC37A3O60309 1634 aa12.96□□□□□ -0.33
USP28-201ENST00000003302 PLEKHG1Q9ULL1 1385 aa12.96□□□□□ -0.34
USP28-201ENST00000003302 GNAI3P08754 354 aa12.96□□□□□ -0.34
USP28-201ENST00000003302 DNM1Q05193 864 aaKnown RBP12.96□□□□□ -0.34
USP28-201ENST00000003302 PRPF40BQ6NWY9 871 aaKnown RBP12.96□□□□□ -0.34
USP28-201ENST00000003302 OFD1O75665 1012 aa12.95□□□□□ -0.34
USP28-201ENST00000003302 DDX17Q92841 729 aaKnown RBP12.95□□□□□ -0.34
USP28-201ENST00000003302 FAM13BQ9NYF5 915 aa12.95□□□□□ -0.34
USP28-201ENST00000003302 A0A087WWV3 80 aa12.95□□□□□ -0.34
USP28-201ENST00000003302 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.95□□□□□ -0.34
USP28-201ENST00000003302 ORAI2Q96SN7 254 aa12.95□□□□□ -0.34
USP28-201ENST00000003302 UTRNP46939 3433 aa12.95□□□□□ -0.34
USP28-201ENST00000003302 BCL11BQ9C0K0 894 aaPredicted RBP12.95□□□□□ -0.34
USP28-201ENST00000003302 RAD50Q92878 1312 aa12.95□□□□□ -0.34
USP28-201ENST00000003302 A0A0G2JLW4 131 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms