RNA–Protein interactions for RNA: YNL197C

WHI3, Transcript of RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci, yeast

Gene WHI3, Length 1,986 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
WHI3	YNL197C	HNT2	P49775	206 aa		4.61	□□□□□ -1.67
WHI3	YNL197C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
WHI3	YNL197C	PTC5	Q12511	572 aa		4.61	□□□□□ -1.67
WHI3	YNL197C	PRP9	P19736	530 aa	Known RBP	4.6	□□□□□ -1.67
WHI3	YNL197C	TSR4	P25040	408 aa		4.6	□□□□□ -1.67
WHI3	YNL197C	MSH2	P25847	964 aa		4.6	□□□□□ -1.67
WHI3	YNL197C	YGR045C	P53229	120 aa		4.6	□□□□□ -1.67
WHI3	YNL197C	GNT1	Q12096	491 aa		4.6	□□□□□ -1.67
WHI3	YNL197C	HUL4	P40985	892 aa		4.6	□□□□□ -1.67
WHI3	YNL197C	UTP14	Q04500	899 aa	Known RBP	4.6	□□□□□ -1.67
WHI3	YNL197C	NTG2	Q08214	380 aa		4.6	□□□□□ -1.67
WHI3	YNL197C	YGR161W-C	Q3E744	92 aa		4.6	□□□□□ -1.67
WHI3	YNL197C	HBN1	Q96VH4	193 aa		4.6	□□□□□ -1.67
WHI3	YNL197C	TOP3	P13099	656 aa		4.59	□□□□□ -1.67
WHI3	YNL197C	SAC7	P17121	654 aa		4.59	□□□□□ -1.67
WHI3	YNL197C	DBP2	P24783	546 aa	Known RBP	4.59	□□□□□ -1.67
WHI3	YNL197C	ALG14	P38242	237 aa		4.59	□□□□□ -1.67
WHI3	YNL197C	DNM1	P54861	757 aa		4.59	□□□□□ -1.67
WHI3	YNL197C	NOP14	Q99207	810 aa	Known RBP	4.59	□□□□□ -1.67
WHI3	YNL197C	YER152C	P10356	443 aa		4.58	□□□□□ -1.68
WHI3	YNL197C	PNT1	P38969	423 aa		4.58	□□□□□ -1.68
WHI3	YNL197C	ICP55	P40051	511 aa		4.58	□□□□□ -1.68
WHI3	YNL197C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
WHI3	YNL197C	QNS1	P38795	714 aa	Known RBP	4.58	□□□□□ -1.68
WHI3	YNL197C	UBP12	P39538	1254 aa		4.58	□□□□□ -1.68
WHI3	YNL197C	MSH4	P40965	878 aa	Predicted RBP	4.58	□□□□□ -1.68
WHI3	YNL197C	KIP3	P53086	805 aa	Known RBP	4.58	□□□□□ -1.68
WHI3	YNL197C	BUL2	Q03758	920 aa	Known RBP	4.58	□□□□□ -1.68
WHI3	YNL197C	RSA3	Q05942	220 aa	Known RBP	4.58	□□□□□ -1.68
WHI3	YNL197C	RPL8A	P17076	256 aa	Known RBP	4.57	□□□□□ -1.68
WHI3	YNL197C	GDH3	P39708	457 aa		4.57	□□□□□ -1.68
WHI3	YNL197C	SNF7	P39929	240 aa	Known RBP	4.57	□□□□□ -1.68
WHI3	YNL197C	SIT1	P39980	628 aa		4.57	□□□□□ -1.68
WHI3	YNL197C	ATG36	P46983	293 aa		4.57	□□□□□ -1.68
WHI3	YNL197C	VPS53	P47061	822 aa		4.57	□□□□□ -1.68
WHI3	YNL197C	ELA1	P53861	379 aa	Predicted RBP	4.57	□□□□□ -1.68
WHI3	YNL197C	LAP2	Q10740	671 aa		4.57	□□□□□ -1.68
WHI3	YNL197C	DPH6	Q12429	685 aa		4.57	□□□□□ -1.68
WHI3	YNL197C	NHA1	Q99271	985 aa		4.57	□□□□□ -1.68
WHI3	YNL197C	RPL11A	P0C0W9	174 aa	Known RBP	4.56	□□□□□ -1.68
WHI3	YNL197C	KIP1	P28742	1111 aa		4.56	□□□□□ -1.68
WHI3	YNL197C	AFR1	P33304	620 aa		4.56	□□□□□ -1.68
WHI3	YNL197C	MAE1	P36013	669 aa	Known RBP	4.56	□□□□□ -1.68
WHI3	YNL197C	CCC2	P38995	1004 aa		4.56	□□□□□ -1.68
WHI3	YNL197C	HSV2	P50079	448 aa	Predicted RBP	4.56	□□□□□ -1.68
WHI3	YNL197C	ZDS1	P50111	915 aa	Known RBP	4.56	□□□□□ -1.68
WHI3	YNL197C	YGL081W	P53156	320 aa		4.56	□□□□□ -1.68
WHI3	YNL197C	YDL124W	Q07551	312 aa	Known RBP	4.56	□□□□□ -1.68
WHI3	YNL197C	YOR223W	Q12015	292 aa		4.56	□□□□□ -1.68
WHI3	YNL197C	PUS1	Q12211	544 aa	Known RBP	4.56	□□□□□ -1.68
WHI3	YNL197C	RPL11B	Q3E757	174 aa	Predicted RBP	4.56	□□□□□ -1.68
WHI3	YNL197C	RET1	P22276	1149 aa	Known RBP	4.56	□□□□□ -1.68
WHI3	YNL197C	MEF1	P25039	761 aa		4.56	□□□□□ -1.68
WHI3	YNL197C	DSE4	P53753	1117 aa		4.56	□□□□□ -1.68
WHI3	YNL197C	UGO1	Q03327	502 aa		4.56	□□□□□ -1.68
WHI3	YNL197C	YMR074C	Q04773	145 aa		4.56	□□□□□ -1.68
WHI3	YNL197C	YPL260W	Q08977	551 aa		4.56	□□□□□ -1.68
WHI3	YNL197C	YLL054C	Q12244	843 aa		4.56	□□□□□ -1.68
WHI3	YNL197C	TY1A-NL1	Q12391	440 aa	Known RBP	4.56	□□□□□ -1.68
WHI3	YNL197C	SSB1	P11484	613 aa	Known RBP	4.55	□□□□□ -1.68
WHI3	YNL197C	YBR284W	P38150	797 aa		4.55	□□□□□ -1.68
WHI3	YNL197C	ATG14	P38270	344 aa		4.55	□□□□□ -1.68
WHI3	YNL197C	MXR1	P40029	184 aa		4.55	□□□□□ -1.68
WHI3	YNL197C	SSB2	P40150	613 aa	Known RBP	4.55	□□□□□ -1.68
WHI3	YNL197C	YNR029C	P53729	429 aa	Known RBP	4.55	□□□□□ -1.68
WHI3	YNL197C	DOT1	Q04089	582 aa	Known RBP	4.55	□□□□□ -1.68
WHI3	YNL197C	AVO1	Q08236	1176 aa		4.55	□□□□□ -1.68
WHI3	YNL197C	MSD1	P15179	658 aa	Known RBP	4.54	□□□□□ -1.68
WHI3	YNL197C	GPB2	P39717	880 aa		4.54	□□□□□ -1.68
WHI3	YNL197C	UBP6	P43593	499 aa	Known RBP	4.54	□□□□□ -1.68
WHI3	YNL197C	YDR306C	Q06640	478 aa		4.54	□□□□□ -1.68
WHI3	YNL197C	SPO21	Q12411	609 aa		4.54	□□□□□ -1.68
WHI3	YNL197C	MDM12	Q92328	271 aa		4.54	□□□□□ -1.68
WHI3	YNL197C	SRM1	P21827	482 aa		4.54	□□□□□ -1.68
WHI3	YNL197C	NFS1	P25374	497 aa		4.54	□□□□□ -1.68
WHI3	YNL197C	TOM20	P35180	183 aa		4.54	□□□□□ -1.68
WHI3	YNL197C	YKL151C	P36059	337 aa		4.54	□□□□□ -1.68
WHI3	YNL197C	PET10	P36139	283 aa		4.54	□□□□□ -1.68
WHI3	YNL197C	YFL054C	P43549	646 aa		4.54	□□□□□ -1.68
WHI3	YNL197C	LSB3	P43603	459 aa	Known RBP	4.54	□□□□□ -1.68
WHI3	YNL197C	YLR257W	Q06146	321 aa	Known RBP	4.54	□□□□□ -1.68
WHI3	YNL197C	SPP382	Q06411	708 aa	Predicted RBP	4.54	□□□□□ -1.68
WHI3	YNL197C	ADR1	P07248	1323 aa		4.53	□□□□□ -1.68
WHI3	YNL197C	SMY2	P32909	740 aa	Known RBP	4.53	□□□□□ -1.68
WHI3	YNL197C	SLA2	P33338	968 aa		4.53	□□□□□ -1.68
WHI3	YNL197C	HSE1	P38753	452 aa		4.53	□□□□□ -1.68
WHI3	YNL197C	RRM3	P38766	723 aa		4.53	□□□□□ -1.68
WHI3	YNL197C	CRP1	P38845	465 aa	Known RBP	4.53	□□□□□ -1.68
WHI3	YNL197C	YJL045W	P47052	634 aa		4.53	□□□□□ -1.68
WHI3	YNL197C	GIC2	Q06648	383 aa		4.53	□□□□□ -1.68
WHI3	YNL197C	PHM7	Q12252	991 aa		4.53	□□□□□ -1.68
WHI3	YNL197C	CDC12	P32468	407 aa	Known RBP	4.53	□□□□□ -1.68
WHI3	YNL197C	GPT2	P36148	743 aa		4.53	□□□□□ -1.68
WHI3	YNL197C	ERT1	P38140	529 aa		4.53	□□□□□ -1.68
WHI3	YNL197C	NMD3	P38861	518 aa	Known RBP	4.53	□□□□□ -1.68
WHI3	YNL197C	CDC11	P32458	415 aa		4.52	□□□□□ -1.69
WHI3	YNL197C	PEX6	P33760	1030 aa		4.52	□□□□□ -1.69
WHI3	YNL197C	NNK1	P36003	928 aa		4.52	□□□□□ -1.69
WHI3	YNL197C	RPN3	P40016	523 aa	Known RBP	4.52	□□□□□ -1.69
WHI3	YNL197C	YEN1	P40028	759 aa		4.52	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 28.3 ms