RNA–Protein interactions for RNA: YMR012W

CLU1, Transcript of Subunit of the eukaryotic translation initiation factor 3 (eIF3), yeast

Gene CLU1, Length 3,834 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLU1	YMR012W	GPP1	P41277	250 aa	Known RBP	1.75	□□□□□ -2.13
CLU1	YMR012W	YPL062W	Q02781	134 aa		1.75	□□□□□ -2.13
CLU1	YMR012W	FPR4	Q06205	392 aa	Predicted RBP	1.75	□□□□□ -2.13
CLU1	YMR012W	GRX6	Q12438	231 aa		1.75	□□□□□ -2.13
CLU1	YMR012W	Q0142	Q9ZZW4	58 aa		1.75	□□□□□ -2.13
CLU1	YMR012W	INO1	P11986	533 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	PFK1	P16861	987 aa	Known RBP	1.74	□□□□□ -2.13
CLU1	YMR012W	CLN2	P20438	545 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	PRP5	P21372	849 aa	Predicted RBP	1.74	□□□□□ -2.13
CLU1	YMR012W	RPN12	P32496	274 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	VPS35	P34110	944 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	CSE4	P36012	229 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	VBA5	P36172	582 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	TOS1	P38288	455 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	YER158C	P40095	573 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	RAT1	Q02792	1006 aa	Known RBP	1.74	□□□□□ -2.13
CLU1	YMR012W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	1.74	□□□□□ -2.13	not detected
CLU1	YMR012W	ATG16	Q03818	150 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	FAS2	P19097	1887 aa	Known RBP	1.74	□□□□□ -2.13
CLU1	YMR012W	BET3	P36149	193 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	RAD55	P38953	406 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	KXD1	P53158	218 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	NST1	P53935	1240 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	MOT3	P54785	490 aa	Known RBP	1.74	□□□□□ -2.13
CLU1	YMR012W	TIM50	Q02776	476 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	CAB1	Q04430	367 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	THI73	Q07904	523 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	BUD20	Q08004	166 aa	Predicted RBP	1.74	□□□□□ -2.13
CLU1	YMR012W	ALG6	Q12001	544 aa	Known RBP	1.74	□□□□□ -2.13
CLU1	YMR012W	MLF3	P32047	452 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	GPB2	P39717	880 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	HUL4	P40985	892 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	YFL054C	P43549	646 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	OSW7	P43611	510 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	BNA1	P47096	177 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	PEX8	P53248	589 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	YOR378W	Q08902	515 aa		1.74	□□□□□ -2.13
CLU1	YMR012W	RPP1B	P10622	106 aa	Known RBP	1.73	□□□□□ -2.13
CLU1	YMR012W	MRF1	P30775	413 aa	Predicted RBP	1.73	□□□□□ -2.13
CLU1	YMR012W	APE3	P37302	537 aa	Known RBP	1.73	□□□□□ -2.13
CLU1	YMR012W	PFF1	P38244	976 aa		1.73	□□□□□ -2.13
CLU1	YMR012W	RSC1	P53236	928 aa		1.73	□□□□□ -2.13
CLU1	YMR012W	GCR2	Q01722	534 aa		1.73	□□□□□ -2.13
CLU1	YMR012W	ROD1	Q02805	837 aa		1.73	□□□□□ -2.13
CLU1	YMR012W	NAN1	Q02931	896 aa	Known RBP	1.73	□□□□□ -2.13
CLU1	YMR012W	DIB1	Q06819	143 aa	Predicted RBP	1.73	□□□□□ -2.13
CLU1	YMR012W	YPR015C	Q12531	247 aa		1.73	□□□□□ -2.13
CLU1	YMR012W	SPT16	P32558	1035 aa	Known RBP	1.73	□□□□□ -2.13
CLU1	YMR012W	SAP190	P36123	1033 aa		1.73	□□□□□ -2.13
CLU1	YMR012W	YHR131C	P38835	850 aa		1.73	□□□□□ -2.13
CLU1	YMR012W	UBP12	P39538	1254 aa		1.73	□□□□□ -2.13
CLU1	YMR012W	SQS1	P53866	767 aa	Known RBP	1.73	□□□□□ -2.13
CLU1	YMR012W	MEC3	Q02574	474 aa		1.73	□□□□□ -2.13
CLU1	YMR012W	SPO20	Q04359	397 aa		1.73	□□□□□ -2.13
CLU1	YMR012W	AOS1	Q06624	347 aa		1.73	□□□□□ -2.13
CLU1	YMR012W	HCA4	P20448	770 aa	Known RBP	1.73	□□□□□ -2.13
CLU1	YMR012W	DAL7	P21826	554 aa		1.73	□□□□□ -2.13
CLU1	YMR012W	DUR3	P33413	735 aa		1.73	□□□□□ -2.13
CLU1	YMR012W	PEA2	P40091	420 aa		1.73	□□□□□ -2.13
CLU1	YMR012W	HIS6	P40545	261 aa		1.73	□□□□□ -2.13
CLU1	YMR012W	SAM37	P50110	327 aa		1.73	□□□□□ -2.13
CLU1	YMR012W	GYP1	Q08484	637 aa		1.73	□□□□□ -2.13
CLU1	YMR012W	YLR125W	Q12138	136 aa		1.73	□□□□□ -2.13
CLU1	YMR012W	ADE6	P38972	1358 aa	Known RBP	1.72	□□□□□ -2.13
CLU1	YMR012W	HOM3	P10869	527 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	IDI1	P15496	288 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	NPR1	P22211	790 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	AAR2	P32357	355 aa	Predicted RBP	1.72	□□□□□ -2.13
CLU1	YMR012W	IRE1	P32361	1115 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	YRO2	P38079	344 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	ISW1	P38144	1129 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	DOT5	P40553	215 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	SUM1	P46676	1062 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	YPP1	P46951	817 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	ISU2	Q12056	156 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	PIN2	Q12057	282 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	NOP14	Q99207	810 aa	Known RBP	1.72	□□□□□ -2.13
CLU1	YMR012W	CLB5	P30283	435 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	PAH1	P32567	862 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	AFG2	P32794	780 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	BEM3	P32873	1128 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	YJR107W	P47145	328 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	YGR130C	P53278	816 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	ULP1	Q02724	621 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	AGE1	Q04412	482 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	YDL124W	Q07551	312 aa	Known RBP	1.72	□□□□□ -2.13
CLU1	YMR012W	GAS4	Q08271	471 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	HSP60	P19882	572 aa	Known RBP	1.72	□□□□□ -2.13
CLU1	YMR012W	OPI1	P21957	404 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	SER1	P33330	395 aa	Known RBP	1.72	□□□□□ -2.13
CLU1	YMR012W	OYE3	P41816	400 aa	Predicted RBP	1.72	□□□□□ -2.13
CLU1	YMR012W	TY4B-J	P47024	1803 aa		1.72	□□□□□ -2.13
CLU1	YMR012W	NFS1	P25374	497 aa		1.71	□□□□□ -2.14
CLU1	YMR012W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	1.71	□□□□□ -2.14	not detected
CLU1	YMR012W	MLS1	P30952	554 aa		1.71	□□□□□ -2.14
CLU1	YMR012W	MRS6	P32864	603 aa	Known RBP	1.71	□□□□□ -2.14
CLU1	YMR012W	LDH1	P38139	375 aa		1.71	□□□□□ -2.14
CLU1	YMR012W	CCT3	P39077	534 aa	Known RBP	1.71	□□□□□ -2.14
CLU1	YMR012W	CEP3	P40969	608 aa		1.71	□□□□□ -2.14
CLU1	YMR012W	TY4A-J	P47023	414 aa		1.71	□□□□□ -2.14

Retrieved 100 of 5,963 RNA–protein pairs in 51.1 ms