RNA–Protein interactions for RNA: YKR092C

SRP40, Transcript of Nucleolar serine-rich protein, yeast

Gene SRP40, Length 1,221 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SRP40	YKR092C	XRN1	P22147	1528 aa	Known RBP	5.01	□□□□□ -1.61
SRP40	YKR092C	MMS22	Q06164	1454 aa		5	□□□□□ -1.61
SRP40	YKR092C	MSB1	P21339	1137 aa	Known RBP	5	□□□□□ -1.61
SRP40	YKR092C	BAS1	P22035	811 aa		5	□□□□□ -1.61
SRP40	YKR092C	CNN1	P43618	361 aa		5	□□□□□ -1.61
SRP40	YKR092C	NNF1	P47149	201 aa		5	□□□□□ -1.61
SRP40	YKR092C	TIF35	Q04067	274 aa	Known RBP	5	□□□□□ -1.61
SRP40	YKR092C	SPO20	Q04359	397 aa		5	□□□□□ -1.61
SRP40	YKR092C	HIR3	P47171	1648 aa		4.99	□□□□□ -1.61
SRP40	YKR092C	DBP5	P20449	482 aa	Known RBP	4.99	□□□□□ -1.61
SRP40	YKR092C	FPR3	P38911	411 aa	Known RBP	4.99	□□□□□ -1.61
SRP40	YKR092C	ALT1	P52893	592 aa		4.99	□□□□□ -1.61
SRP40	YKR092C	CWC22	P53333	577 aa	Known RBP	4.99	□□□□□ -1.61
SRP40	YKR092C	SUB1	P54000	292 aa	Known RBP	4.99	□□□□□ -1.61
SRP40	YKR092C	YLR225C	Q05948	407 aa	Known RBP	4.99	□□□□□ -1.61
SRP40	YKR092C	RLP24	Q07915	199 aa	Known RBP	4.99	□□□□□ -1.61
SRP40	YKR092C	MLS1	P30952	554 aa		4.98	□□□□□ -1.61
SRP40	YKR092C	MCM7	P38132	845 aa		4.98	□□□□□ -1.61
SRP40	YKR092C	SEA4	P38164	1038 aa		4.98	□□□□□ -1.61
SRP40	YKR092C	RGD1	P38339	666 aa		4.98	□□□□□ -1.61
SRP40	YKR092C	NMD3	P38861	518 aa	Known RBP	4.98	□□□□□ -1.61
SRP40	YKR092C	MMM1	P41800	426 aa		4.98	□□□□□ -1.61
SRP40	YKR092C	SDH1	Q00711	640 aa		4.98	□□□□□ -1.61
SRP40	YKR092C	SSF2	Q12153	453 aa	Predicted RBP	4.98	□□□□□ -1.61
SRP40	YKR092C	KIP1	P28742	1111 aa		4.97	□□□□□ -1.61
SRP40	YKR092C	MOT2	P34909	587 aa	Known RBP	4.97	□□□□□ -1.61
SRP40	YKR092C	MDG1	P53885	366 aa		4.97	□□□□□ -1.61
SRP40	YKR092C	EAR1	Q03212	550 aa		4.97	□□□□□ -1.61
SRP40	YKR092C	TPP1	Q03796	238 aa		4.97	□□□□□ -1.61
SRP40	YKR092C	TDA5	Q06417	326 aa	Known RBP	4.97	□□□□□ -1.61
SRP40	YKR092C	AOS1	Q06624	347 aa		4.97	□□□□□ -1.61
SRP40	YKR092C	PUS7	Q08647	676 aa	Known RBP	4.97	□□□□□ -1.61
SRP40	YKR092C	HRK1	Q08732	759 aa	Known RBP	4.97	□□□□□ -1.61
SRP40	YKR092C	GIN4	Q12263	1142 aa		4.97	□□□□□ -1.61
SRP40	YKR092C	GCD1	P09032	578 aa	Predicted RBP	4.96	□□□□□ -1.62
SRP40	YKR092C	INO1	P11986	533 aa		4.96	□□□□□ -1.62
SRP40	YKR092C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.96	□□□□□ -1.62	not detected
SRP40	YKR092C	GRX1	P25373	110 aa	Known RBP	4.96	□□□□□ -1.62
SRP40	YKR092C	AGP1	P25376	633 aa		4.96	□□□□□ -1.62
SRP40	YKR092C	ABD1	P32783	436 aa	Predicted RBP	4.96	□□□□□ -1.62
SRP40	YKR092C	RPS0A	P32905	252 aa	Known RBP	4.96	□□□□□ -1.62
SRP40	YKR092C	WHI3	P34761	661 aa	Known RBP	4.96	□□□□□ -1.62
SRP40	YKR092C	YKL069W	P36088	180 aa		4.96	□□□□□ -1.62
SRP40	YKR092C	CIT3	P43635	486 aa		4.96	□□□□□ -1.62
SRP40	YKR092C	HNT2	P49775	206 aa		4.96	□□□□□ -1.62
SRP40	YKR092C	VPS72	Q03388	795 aa		4.96	□□□□□ -1.62
SRP40	YKR092C	YPL260W	Q08977	551 aa		4.96	□□□□□ -1.62
SRP40	YKR092C	TOA1	P32773	286 aa		4.95	□□□□□ -1.62
SRP40	YKR092C	MPH1	P40562	993 aa		4.95	□□□□□ -1.62
SRP40	YKR092C	YJL045W	P47052	634 aa		4.95	□□□□□ -1.62
SRP40	YKR092C	RCM1	P53972	490 aa		4.95	□□□□□ -1.62
SRP40	YKR092C	ESC2	Q06340	456 aa		4.95	□□□□□ -1.62
SRP40	YKR092C	YOR059C	Q08448	450 aa	Known RBP	4.95	□□□□□ -1.62
SRP40	YKR092C	YVC1	Q12324	675 aa		4.95	□□□□□ -1.62
SRP40	YKR092C	SPO21	Q12411	609 aa		4.95	□□□□□ -1.62
SRP40	YKR092C	RKM4	Q12504	494 aa		4.95	□□□□□ -1.62
SRP40	YKR092C	REV3	P14284	1504 aa		4.95	□□□□□ -1.62
SRP40	YKR092C	HSP82	P02829	709 aa	Known RBP	4.94	□□□□□ -1.62
SRP40	YKR092C	SBA1	P28707	216 aa	Known RBP	4.94	□□□□□ -1.62
SRP40	YKR092C	ELM1	P32801	640 aa		4.94	□□□□□ -1.62
SRP40	YKR092C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.94	□□□□□ -1.62	not detected
SRP40	YKR092C	GPB2	P39717	880 aa		4.94	□□□□□ -1.62
SRP40	YKR092C	SNF7	P39929	240 aa	Known RBP	4.94	□□□□□ -1.62
SRP40	YKR092C	SPF1	P39986	1215 aa	Known RBP	4.94	□□□□□ -1.62
SRP40	YKR092C	YGL176C	P46945	554 aa		4.94	□□□□□ -1.62
SRP40	YKR092C	GNT1	Q12096	491 aa		4.94	□□□□□ -1.62
SRP40	YKR092C	THO2	P53552	1597 aa	Known RBP	4.94	□□□□□ -1.62
SRP40	YKR092C	SIN3	P22579	1536 aa		4.93	□□□□□ -1.62
SRP40	YKR092C	YER152C	P10356	443 aa		4.93	□□□□□ -1.62
SRP40	YKR092C	YSC84	P32793	468 aa		4.93	□□□□□ -1.62
SRP40	YKR092C	YKL107W	P34251	309 aa		4.93	□□□□□ -1.62
SRP40	YKR092C	VBA5	P36172	582 aa		4.93	□□□□□ -1.62
SRP40	YKR092C	OCA5	P38738	679 aa		4.93	□□□□□ -1.62
SRP40	YKR092C	YJL049W	P47048	450 aa		4.93	□□□□□ -1.62
SRP40	YKR092C	HOS3	Q02959	697 aa	Known RBP	4.93	□□□□□ -1.62
SRP40	YKR092C	SHE9	Q04172	456 aa		4.93	□□□□□ -1.62
SRP40	YKR092C	SPP382	Q06411	708 aa	Predicted RBP	4.93	□□□□□ -1.62
SRP40	YKR092C	NSI1	Q12457	570 aa		4.93	□□□□□ -1.62
SRP40	YKR092C	LRG1	P35688	1017 aa		4.92	□□□□□ -1.62
SRP40	YKR092C	MRP8	P35719	219 aa		4.92	□□□□□ -1.62
SRP40	YKR092C	NAN1	Q02931	896 aa	Known RBP	4.92	□□□□□ -1.62
SRP40	YKR092C	YPL066W	Q12194	479 aa		4.92	□□□□□ -1.62
SRP40	YKR092C	HIF1	Q12373	385 aa		4.92	□□□□□ -1.62
SRP40	YKR092C	YOL098C	Q12496	1037 aa		4.92	□□□□□ -1.62
SRP40	YKR092C	RNQ1	P25367	405 aa		4.91	□□□□□ -1.62
SRP40	YKR092C	POL12	P38121	705 aa	Predicted RBP	4.91	□□□□□ -1.62
SRP40	YKR092C	NUG1	P40010	520 aa	Known RBP	4.91	□□□□□ -1.62
SRP40	YKR092C	RPN3	P40016	523 aa	Known RBP	4.91	□□□□□ -1.62
SRP40	YKR092C	PLP2	Q12017	286 aa		4.91	□□□□□ -1.62
SRP40	YKR092C	SSK2	P53599	1579 aa		4.91	□□□□□ -1.62
SRP40	YKR092C	TAF2	P23255	1407 aa		4.9	□□□□□ -1.62
SRP40	YKR092C	SWE1	P32944	819 aa		4.9	□□□□□ -1.63
SRP40	YKR092C	SEG2	P34250	1132 aa		4.9	□□□□□ -1.63
SRP40	YKR092C	YBR184W	P38299	523 aa		4.9	□□□□□ -1.63
SRP40	YKR092C	YHL012W	P38709	493 aa		4.9	□□□□□ -1.63
SRP40	YKR092C	MBP1	P39678	833 aa		4.9	□□□□□ -1.63
SRP40	YKR092C	IRR1	P40541	1150 aa		4.9	□□□□□ -1.63
SRP40	YKR092C	OYE3	P41816	400 aa	Predicted RBP	4.9	□□□□□ -1.63
SRP40	YKR092C	TNA1	P53322	534 aa		4.9	□□□□□ -1.63
SRP40	YKR092C	TRE1	Q08919	783 aa		4.9	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 50.5 ms