RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	YJL049W	P47048	450 aa		3.11	□□□□□ -1.91
SNU114	YKL173W	YJR142W	P47173	342 aa		3.11	□□□□□ -1.91
SNU114	YKL173W	PUS7	Q08647	676 aa	Known RBP	3.11	□□□□□ -1.91
SNU114	YKL173W	CDC53	Q12018	815 aa	Known RBP	3.11	□□□□□ -1.91
SNU114	YKL173W	RET1	P22276	1149 aa	Known RBP	3.11	□□□□□ -1.91
SNU114	YKL173W	MKK2	P32491	506 aa		3.11	□□□□□ -1.91
SNU114	YKL173W	STE5	P32917	917 aa		3.11	□□□□□ -1.91
SNU114	YKL173W	PET112	P33893	541 aa		3.11	□□□□□ -1.91
SNU114	YKL173W	MNR2	P35724	969 aa		3.11	□□□□□ -1.91
SNU114	YKL173W	QNS1	P38795	714 aa	Known RBP	3.11	□□□□□ -1.91
SNU114	YKL173W	MTR4	P47047	1073 aa	Known RBP	3.11	□□□□□ -1.91
SNU114	YKL173W	RSM26	P47141	266 aa		3.11	□□□□□ -1.91
SNU114	YKL173W	OMA1	P36163	345 aa		3.1	□□□□□ -1.91
SNU114	YKL173W	TOS1	P38288	455 aa		3.1	□□□□□ -1.91
SNU114	YKL173W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	3.1	□□□□□ -1.91	not detected
SNU114	YKL173W	WRS1	Q12109	432 aa	Known RBP	3.1	□□□□□ -1.91
SNU114	YKL173W	CDC34	P14682	295 aa		3.1	□□□□□ -1.91
SNU114	YKL173W	CLN2	P20438	545 aa		3.1	□□□□□ -1.91
SNU114	YKL173W	PEP7	P32609	515 aa		3.1	□□□□□ -1.91
SNU114	YKL173W	TIM23	P32897	222 aa		3.1	□□□□□ -1.91
SNU114	YKL173W	FPR3	P38911	411 aa	Known RBP	3.1	□□□□□ -1.91
SNU114	YKL173W	RCM1	P53972	490 aa		3.1	□□□□□ -1.91
SNU114	YKL173W	RCL1	Q08096	367 aa	Predicted RBP	3.1	□□□□□ -1.91
SNU114	YKL173W	ENP1	P38333	483 aa	Known RBP	3.09	□□□□□ -1.91
SNU114	YKL173W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	3.09	□□□□□ -1.91	not detected
SNU114	YKL173W	MYO2	P19524	1574 aa	Known RBP	3.09	□□□□□ -1.91
SNU114	YKL173W	ELM1	P32801	640 aa		3.09	□□□□□ -1.91
SNU114	YKL173W	SQT1	P35184	431 aa		3.09	□□□□□ -1.91
SNU114	YKL173W	RTS3	P53289	263 aa		3.09	□□□□□ -1.91
SNU114	YKL173W	GDE1	Q02979	1223 aa		3.09	□□□□□ -1.91
SNU114	YKL173W	YLR257W	Q06146	321 aa	Known RBP	3.09	□□□□□ -1.91
SNU114	YKL173W	EST2	Q06163	884 aa		3.09	□□□□□ -1.91
SNU114	YKL173W	SNF5	P18480	905 aa		3.09	□□□□□ -1.92
SNU114	YKL173W	LRG1	P35688	1017 aa		3.09	□□□□□ -1.92
SNU114	YKL173W	MNN1	P39106	762 aa		3.09	□□□□□ -1.92
SNU114	YKL173W	SPF1	P39986	1215 aa	Known RBP	3.09	□□□□□ -1.92
SNU114	YKL173W	MPH1	P40562	993 aa		3.09	□□□□□ -1.92
SNU114	YKL173W	VPS53	P47061	822 aa		3.09	□□□□□ -1.92
SNU114	YKL173W	RAT1	Q02792	1006 aa	Known RBP	3.09	□□□□□ -1.92
SNU114	YKL173W	ROD1	Q02805	837 aa		3.09	□□□□□ -1.92
SNU114	YKL173W	TRE1	Q08919	783 aa		3.09	□□□□□ -1.92
SNU114	YKL173W	PRI2	P20457	528 aa		3.08	□□□□□ -1.92
SNU114	YKL173W	NUP82	P40368	713 aa		3.08	□□□□□ -1.92
SNU114	YKL173W	SDH1	Q00711	640 aa		3.08	□□□□□ -1.92
SNU114	YKL173W	EEB1	Q02891	456 aa		3.08	□□□□□ -1.92
SNU114	YKL173W	AVO1	Q08236	1176 aa		3.08	□□□□□ -1.92
SNU114	YKL173W	DNA2	P38859	1522 aa		3.08	□□□□□ -1.92
SNU114	YKL173W	RER2	P35196	286 aa		3.08	□□□□□ -1.92
SNU114	YKL173W	RPN3	P40016	523 aa	Known RBP	3.08	□□□□□ -1.92
SNU114	YKL173W	OPI10	Q08202	246 aa		3.08	□□□□□ -1.92
SNU114	YKL173W	SSB1	P11484	613 aa	Known RBP	3.07	□□□□□ -1.92
SNU114	YKL173W	RAD4	P14736	754 aa		3.07	□□□□□ -1.92
SNU114	YKL173W	YSC84	P32793	468 aa		3.07	□□□□□ -1.92
SNU114	YKL173W	ALG3	P38179	458 aa		3.07	□□□□□ -1.92
SNU114	YKL173W	UBP12	P39538	1254 aa		3.07	□□□□□ -1.92
SNU114	YKL173W	SSB2	P40150	613 aa	Known RBP	3.07	□□□□□ -1.92
SNU114	YKL173W	YJL045W	P47052	634 aa		3.07	□□□□□ -1.92
SNU114	YKL173W	LAP2	Q10740	671 aa		3.07	□□□□□ -1.92
SNU114	YKL173W	ERR1	P0CX10	437 aa		3.07	□□□□□ -1.92
SNU114	YKL173W	ERR2	P0CX11	437 aa		3.07	□□□□□ -1.92
SNU114	YKL173W	SRO9	P25567	434 aa	Known RBP	3.07	□□□□□ -1.92
SNU114	YKL173W	KIP1	P28742	1111 aa		3.07	□□□□□ -1.92
SNU114	YKL173W	RTT10	Q08924	1013 aa		3.07	□□□□□ -1.92
SNU114	YKL173W	ABZ1	P37254	787 aa	Predicted RBP	3.06	□□□□□ -1.92
SNU114	YKL173W	SSY1	Q03770	852 aa		3.06	□□□□□ -1.92
SNU114	YKL173W	MET6	P05694	767 aa	Known RBP	3.06	□□□□□ -1.92
SNU114	YKL173W	NMD3	P38861	518 aa	Known RBP	3.06	□□□□□ -1.92
SNU114	YKL173W	OSW7	P43611	510 aa		3.06	□□□□□ -1.92
SNU114	YKL173W	PFD1	P46988	109 aa		3.06	□□□□□ -1.92
SNU114	YKL173W	TYW3	P53177	273 aa		3.06	□□□□□ -1.92
SNU114	YKL173W	TPP1	Q03796	238 aa		3.06	□□□□□ -1.92
SNU114	YKL173W	POB3	Q04636	552 aa	Known RBP	3.06	□□□□□ -1.92
SNU114	YKL173W	DBP5	P20449	482 aa	Known RBP	3.06	□□□□□ -1.92
SNU114	YKL173W	HSP78	P33416	811 aa		3.06	□□□□□ -1.92
SNU114	YKL173W	MAC1	P35192	417 aa		3.06	□□□□□ -1.92
SNU114	YKL173W	TPO2	P53283	614 aa		3.06	□□□□□ -1.92
SNU114	YKL173W	DNM1	P54861	757 aa		3.06	□□□□□ -1.92
SNU114	YKL173W	ESC2	Q06340	456 aa		3.06	□□□□□ -1.92
SNU114	YKL173W	YOL057W	Q08225	711 aa		3.06	□□□□□ -1.92
SNU114	YKL173W	FLC1	Q08967	793 aa		3.06	□□□□□ -1.92
SNU114	YKL173W	YPL260W	Q08977	551 aa		3.06	□□□□□ -1.92
SNU114	YKL173W	YDL177C	Q12257	170 aa		3.06	□□□□□ -1.92
SNU114	YKL173W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	3.05	□□□□□ -1.92	RIP-Chip
SNU114	YKL173W	MDL2	P33311	773 aa		3.05	□□□□□ -1.92
SNU114	YKL173W	THI80	P35202	319 aa		3.05	□□□□□ -1.92
SNU114	YKL173W	RGD1	P38339	666 aa		3.05	□□□□□ -1.92
SNU114	YKL173W	PMC1	P38929	1173 aa	Predicted RBP	3.05	□□□□□ -1.92
SNU114	YKL173W	ZDS1	P50111	915 aa	Known RBP	3.05	□□□□□ -1.92
SNU114	YKL173W	TIF35	Q04067	274 aa	Known RBP	3.05	□□□□□ -1.92
SNU114	YKL173W	CDA2	Q06703	312 aa		3.05	□□□□□ -1.92
SNU114	YKL173W	YPL066W	Q12194	479 aa		3.05	□□□□□ -1.92
SNU114	YKL173W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	3.05	□□□□□ -1.92	not detected
SNU114	YKL173W	SYP1	P25623	870 aa	Known RBP	3.05	□□□□□ -1.92
SNU114	YKL173W	HSE1	P38753	452 aa		3.05	□□□□□ -1.92
SNU114	YKL173W	CNN1	P43618	361 aa		3.05	□□□□□ -1.92
SNU114	YKL173W	HRK1	Q08732	759 aa	Known RBP	3.05	□□□□□ -1.92
SNU114	YKL173W	PTC5	Q12511	572 aa		3.05	□□□□□ -1.92
SNU114	YKL173W	DFG16	Q99234	619 aa		3.05	□□□□□ -1.92
SNU114	YKL173W	ADP1	P25371	1049 aa		3.04	□□□□□ -1.92
SNU114	YKL173W	RSP5	P39940	809 aa	Known RBP	3.04	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 8.8 ms