RNA–Protein interactions for RNA: YGL172W

NUP49, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP49, Length 1,419 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP49	YGL172W	CSM3	Q04659	317 aa		7.64	□□□□□ -1.19
NUP49	YGL172W	GUD1	Q07729	489 aa		7.64	□□□□□ -1.19
NUP49	YGL172W	LSP1	Q12230	341 aa	Known RBP	7.64	□□□□□ -1.19
NUP49	YGL172W	MST1	P07236	462 aa		7.63	□□□□□ -1.19
NUP49	YGL172W	SES1	P07284	462 aa	Known RBP	7.63	□□□□□ -1.19
NUP49	YGL172W	THR4	P16120	514 aa	Known RBP	7.63	□□□□□ -1.19
NUP49	YGL172W	DJP1	P40564	432 aa		7.63	□□□□□ -1.19
NUP49	YGL172W	CIT3	P43635	486 aa		7.63	□□□□□ -1.19
NUP49	YGL172W	CTR1	P49573	406 aa		7.63	□□□□□ -1.19
NUP49	YGL172W	RET3	P53600	189 aa		7.63	□□□□□ -1.19
NUP49	YGL172W	EIS1	Q05050	843 aa	Known RBP	7.63	□□□□□ -1.19
NUP49	YGL172W	PIB1	Q06651	286 aa		7.63	□□□□□ -1.19
NUP49	YGL172W	WSC3	Q12215	556 aa		7.63	□□□□□ -1.19
NUP49	YGL172W	ERP3	Q12403	225 aa		7.63	□□□□□ -1.19
NUP49	YGL172W	ARP6	Q12509	438 aa		7.63	□□□□□ -1.19
NUP49	YGL172W	RGP1	P16664	663 aa		7.62	□□□□□ -1.19
NUP49	YGL172W	REG2	P38232	338 aa		7.62	□□□□□ -1.19
NUP49	YGL172W	BRL1	P38770	471 aa		7.62	□□□□□ -1.19
NUP49	YGL172W	ORC6	P38826	435 aa		7.62	□□□□□ -1.19
NUP49	YGL172W	YLR326W	Q06170	240 aa	Known RBP	7.62	□□□□□ -1.19
NUP49	YGL172W	SLK19	Q08581	821 aa	Known RBP	7.62	□□□□□ -1.19
NUP49	YGL172W	TIP41	Q12199	356 aa		7.62	□□□□□ -1.19
NUP49	YGL172W	YDR461C-A	Q2V2P7	80 aa		7.62	□□□□□ -1.19
NUP49	YGL172W	HXK1	P04806	485 aa	Known RBP	7.61	□□□□□ -1.19
NUP49	YGL172W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	7.61	□□□□□ -1.19	not detected
NUP49	YGL172W	TKL1	P23254	680 aa	Known RBP	7.61	□□□□□ -1.19
NUP49	YGL172W	MBR1	P23493	339 aa		7.61	□□□□□ -1.19
NUP49	YGL172W	SRO9	P25567	434 aa	Known RBP	7.61	□□□□□ -1.19
NUP49	YGL172W	STT3	P39007	718 aa	Known RBP	7.61	□□□□□ -1.19
NUP49	YGL172W	BDH2	P39713	417 aa		7.61	□□□□□ -1.19
NUP49	YGL172W	PSF2	P40359	213 aa		7.61	□□□□□ -1.19
NUP49	YGL172W	HST1	P53685	503 aa		7.61	□□□□□ -1.19
NUP49	YGL172W	PTA1	Q01329	785 aa	Predicted RBP	7.61	□□□□□ -1.19
NUP49	YGL172W	ISA1	Q07821	250 aa	Predicted RBP	7.61	□□□□□ -1.19
NUP49	YGL172W	MET7	Q08645	548 aa		7.61	□□□□□ -1.19
NUP49	YGL172W	YOR296W	Q08748	1289 aa		7.61	□□□□□ -1.19
NUP49	YGL172W	MSC6	Q08818	692 aa	Known RBP	7.61	□□□□□ -1.19
NUP49	YGL172W	TY1B-A	O13527	1196 aa	Known RBP	7.61	□□□□□ -1.19
NUP49	YGL172W	ILV1	P00927	576 aa	Known RBP	7.61	□□□□□ -1.19
NUP49	YGL172W	TUF1	P02992	437 aa	Known RBP	7.61	□□□□□ -1.19
NUP49	YGL172W	GSY1	P23337	708 aa		7.61	□□□□□ -1.19
NUP49	YGL172W	IME2	P32581	645 aa		7.61	□□□□□ -1.19
NUP49	YGL172W	RGT1	P32862	1170 aa		7.61	□□□□□ -1.19
NUP49	YGL172W	GAA1	P39012	614 aa		7.61	□□□□□ -1.19
NUP49	YGL172W	MXR1	P40029	184 aa		7.61	□□□□□ -1.19
NUP49	YGL172W	YGL039W	P53183	348 aa	Known RBP	7.61	□□□□□ -1.19
NUP49	YGL172W	ORC4	P54791	529 aa		7.61	□□□□□ -1.19
NUP49	YGL172W	OYE2	Q03558	400 aa	Known RBP	7.61	□□□□□ -1.19
NUP49	YGL172W	PEX19	Q07418	342 aa		7.61	□□□□□ -1.19
NUP49	YGL172W	PTC5	Q12511	572 aa		7.61	□□□□□ -1.19
NUP49	YGL172W	URA1	P28272	314 aa	Predicted RBP	7.6	□□□□□ -1.19
NUP49	YGL172W	MCM4	P30665	933 aa	Known RBP	7.6	□□□□□ -1.19
NUP49	YGL172W	ISW1	P38144	1129 aa		7.6	□□□□□ -1.19
NUP49	YGL172W	ATG32	P40458	529 aa		7.6	□□□□□ -1.19
NUP49	YGL172W	SDA1	P53313	767 aa	Known RBP	7.6	□□□□□ -1.19
NUP49	YGL172W	FAR11	P53917	953 aa		7.6	□□□□□ -1.19
NUP49	YGL172W	MFM1	Q02783	413 aa		7.6	□□□□□ -1.19
NUP49	YGL172W	WHI4	Q07655	649 aa	Known RBP	7.6	□□□□□ -1.19
NUP49	YGL172W	ALG1	P16661	449 aa		7.59	□□□□□ -1.19
NUP49	YGL172W	YUR1	P26725	428 aa		7.59	□□□□□ -1.19
NUP49	YGL172W	SEC8	P32855	1065 aa		7.59	□□□□□ -1.19
NUP49	YGL172W	TFC4	P33339	1025 aa		7.59	□□□□□ -1.19
NUP49	YGL172W	DBP7	P36120	742 aa	Known RBP	7.59	□□□□□ -1.19
NUP49	YGL172W	EDS1	P38073	919 aa		7.59	□□□□□ -1.19
NUP49	YGL172W	RTC4	P53850	401 aa		7.59	□□□□□ -1.19
NUP49	YGL172W	YMR321C	Q04898	105 aa		7.59	□□□□□ -1.19
NUP49	YGL172W	YLH47	Q06493	454 aa		7.59	□□□□□ -1.19
NUP49	YGL172W	ICL2	Q12031	575 aa		7.59	□□□□□ -1.19
NUP49	YGL172W	FRS2	P15625	503 aa	Known RBP	7.58	□□□□□ -1.2
NUP49	YGL172W	CLB5	P30283	435 aa		7.58	□□□□□ -1.2
NUP49	YGL172W	UBP11	P36026	717 aa		7.58	□□□□□ -1.2
NUP49	YGL172W	HYR1	P40581	163 aa	Known RBP	7.58	□□□□□ -1.2
NUP49	YGL172W	VPS53	P47061	822 aa		7.58	□□□□□ -1.2
NUP49	YGL172W	YGR153W	P48238	217 aa		7.58	□□□□□ -1.2
NUP49	YGL172W	UBP15	P50101	1230 aa		7.58	□□□□□ -1.2
NUP49	YGL172W	HUL5	P53119	910 aa		7.58	□□□□□ -1.2
NUP49	YGL172W	BRE5	P53741	515 aa	Known RBP	7.58	□□□□□ -1.2
NUP49	YGL172W	ULP1	Q02724	621 aa		7.58	□□□□□ -1.2
NUP49	YGL172W	SVF1	Q05515	481 aa		7.58	□□□□□ -1.2
NUP49	YGL172W	ESS1	P22696	170 aa		7.57	□□□□□ -1.2
NUP49	YGL172W	SCS3	P53012	380 aa		7.57	□□□□□ -1.2
NUP49	YGL172W	MMR1	Q06324	491 aa		7.57	□□□□□ -1.2
NUP49	YGL172W	TRM11	Q12463	433 aa		7.57	□□□□□ -1.2
NUP49	YGL172W	SMC6	Q12749	1114 aa		7.57	□□□□□ -1.2
NUP49	YGL172W	PGK1	P00560	416 aa	Known RBP	7.56	□□□□□ -1.2
NUP49	YGL172W	KEX1	P09620	729 aa		7.56	□□□□□ -1.2
NUP49	YGL172W	PAH1	P32567	862 aa		7.56	□□□□□ -1.2
NUP49	YGL172W	PGM1	P33401	570 aa	Known RBP	7.56	□□□□□ -1.2
NUP49	YGL172W	CCT5	P40413	562 aa	Known RBP	7.56	□□□□□ -1.2
NUP49	YGL172W	CIR1	P42940	261 aa		7.56	□□□□□ -1.2
NUP49	YGL172W	DIP5	P53388	608 aa		7.56	□□□□□ -1.2
NUP49	YGL172W	CNM67	P53865	581 aa	Known RBP	7.56	□□□□□ -1.2
NUP49	YGL172W	ADY4	Q05955	493 aa		7.56	□□□□□ -1.2
NUP49	YGL172W	CRD1	Q07560	283 aa		7.56	□□□□□ -1.2
NUP49	YGL172W	APC11	Q12157	165 aa		7.56	□□□□□ -1.2
NUP49	YGL172W	YOR131C	Q12486	218 aa		7.56	□□□□□ -1.2
NUP49	YGL172W	HIS4	P00815	799 aa	Known RBP	7.55	□□□□□ -1.2
NUP49	YGL172W	SUP45	P12385	437 aa	Known RBP	7.55	□□□□□ -1.2
NUP49	YGL172W	POX1	P13711	748 aa		7.55	□□□□□ -1.2
NUP49	YGL172W	MCM3	P24279	971 aa	Known RBP	7.55	□□□□□ -1.2

Retrieved 100 of 5,963 RNA–protein pairs in 29.4 ms