RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeast

Gene RTR1, Length 681 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTR1	YER139C	DED1	P06634	604 aa	Known RBP	5.09	□□□□□ -1.59
RTR1	YER139C	CMP2	P14747	604 aa		5.09	□□□□□ -1.59
RTR1	YER139C	SEC23	P15303	768 aa	Known RBP	5.09	□□□□□ -1.59
RTR1	YER139C	ALG3	P38179	458 aa		5.09	□□□□□ -1.59
RTR1	YER139C	MCM6	P53091	1017 aa	Known RBP	5.09	□□□□□ -1.59
RTR1	YER139C	YPL109C	Q02981	657 aa		5.09	□□□□□ -1.59
RTR1	YER139C	ADI1	Q03677	179 aa		5.09	□□□□□ -1.59
RTR1	YER139C	ACK1	Q07622	623 aa	Predicted RBP	5.09	□□□□□ -1.59
RTR1	YER139C	CDC6	P09119	513 aa		5.08	□□□□□ -1.6
RTR1	YER139C	STE11	P23561	717 aa		5.08	□□□□□ -1.6
RTR1	YER139C	YHL050C	P38721	697 aa		5.08	□□□□□ -1.6
RTR1	YER139C	YHR219W	P38900	624 aa		5.08	□□□□□ -1.6
RTR1	YER139C	RXT3	Q07458	294 aa		5.08	□□□□□ -1.6
RTR1	YER139C	RIB2	Q12362	591 aa	Known RBP	5.08	□□□□□ -1.6
RTR1	YER139C	RPN3	P40016	523 aa	Known RBP	5.07	□□□□□ -1.6
RTR1	YER139C	DAK2	P43550	591 aa		5.07	□□□□□ -1.6
RTR1	YER139C	MNN10	P50108	393 aa	Known RBP	5.07	□□□□□ -1.6
RTR1	YER139C	RSM24	Q03976	319 aa		5.07	□□□□□ -1.6
RTR1	YER139C	GPB1	Q08886	897 aa		5.07	□□□□□ -1.6
RTR1	YER139C	NTO1	Q12311	748 aa		5.07	□□□□□ -1.6
RTR1	YER139C	RFC5	P38251	354 aa		5.06	□□□□□ -1.6
RTR1	YER139C	FAA3	P39002	694 aa		5.06	□□□□□ -1.6
RTR1	YER139C	AIM21	P40563	679 aa		5.06	□□□□□ -1.6
RTR1	YER139C	YFL054C	P43549	646 aa		5.06	□□□□□ -1.6
RTR1	YER139C	PMI40	P29952	429 aa	Known RBP	5.05	□□□□□ -1.6
RTR1	YER139C	YAP6	Q03935	383 aa		5.05	□□□□□ -1.6
RTR1	YER139C	YPL260W	Q08977	551 aa		5.05	□□□□□ -1.6
RTR1	YER139C	MET4	P32389	672 aa		5.04	□□□□□ -1.6
RTR1	YER139C	PIC2	P40035	300 aa		5.04	□□□□□ -1.6
RTR1	YER139C	PHO23	P50947	330 aa		5.04	□□□□□ -1.6
RTR1	YER139C	OXR1	Q08952	273 aa		5.04	□□□□□ -1.6
RTR1	YER139C	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	5.03	□□□□□ -1.6	not detected
RTR1	YER139C	RAD53	P22216	821 aa		5.02	□□□□□ -1.61
RTR1	YER139C	CHS7	P38843	316 aa		5.02	□□□□□ -1.61
RTR1	YER139C	GTF1	P53260	183 aa	Predicted RBP	5.02	□□□□□ -1.61
RTR1	YER139C	VPS62	P53285	467 aa		5.02	□□□□□ -1.61
RTR1	YER139C	PBP1	P53297	722 aa	Known RBP	5.02	□□□□□ -1.61
RTR1	YER139C	CTF4	Q01454	927 aa		5.02	□□□□□ -1.61
RTR1	YER139C	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	5.02	□□□□□ -1.61	not detected
RTR1	YER139C	RAT1	Q02792	1006 aa	Known RBP	5.02	□□□□□ -1.61
RTR1	YER139C	SVS1	Q12254	260 aa		5.01	□□□□□ -1.61
RTR1	YER139C	HXK1	P04806	485 aa	Known RBP	5	□□□□□ -1.61
RTR1	YER139C	GEF1	P37020	779 aa		5	□□□□□ -1.61
RTR1	YER139C	ROD1	Q02805	837 aa		5	□□□□□ -1.61
RTR1	YER139C	YLR224W	Q05947	369 aa		5	□□□□□ -1.61
RTR1	YER139C	KIN2	P13186	1147 aa	Known RBP	4.99	□□□□□ -1.61
RTR1	YER139C	EMC1	P25574	760 aa		4.99	□□□□□ -1.61
RTR1	YER139C	APL1	P27351	700 aa		4.99	□□□□□ -1.61
RTR1	YER139C	GCV2	P49095	1034 aa		4.99	□□□□□ -1.61
RTR1	YER139C	KIN4	Q01919	800 aa		4.99	□□□□□ -1.61
RTR1	YER139C	SIZ1	Q04195	904 aa		4.99	□□□□□ -1.61
RTR1	YER139C	HMI1	Q12039	706 aa		4.99	□□□□□ -1.61
RTR1	YER139C	PMA1	P05030	918 aa	Known RBP	4.98	□□□□□ -1.61
RTR1	YER139C	TAF13	P11747	167 aa		4.98	□□□□□ -1.61
RTR1	YER139C	PPX1	P38698	397 aa		4.98	□□□□□ -1.61
RTR1	YER139C	URN1	Q06525	465 aa	Known RBP	4.98	□□□□□ -1.61
RTR1	YER139C	YER152C	P10356	443 aa		4.97	□□□□□ -1.61
RTR1	YER139C	MKK2	P32491	506 aa		4.97	□□□□□ -1.61
RTR1	YER139C	YML122C	Q03207	126 aa		4.97	□□□□□ -1.61
RTR1	YER139C	WHI5	Q12416	295 aa		4.97	□□□□□ -1.61
RTR1	YER139C	DCG1	P32460	244 aa		4.96	□□□□□ -1.62
RTR1	YER139C	RPT1	P33299	467 aa	Known RBP	4.96	□□□□□ -1.62
RTR1	YER139C	DEF1	P35732	738 aa	Known RBP	4.96	□□□□□ -1.62
RTR1	YER139C	RGD1	P38339	666 aa		4.95	□□□□□ -1.62
RTR1	YER139C	MSS4	P38994	779 aa		4.95	□□□□□ -1.62
RTR1	YER139C	SIW14	P53965	281 aa		4.95	□□□□□ -1.62
RTR1	YER139C	NOP12	Q08208	459 aa	Known RBP	4.95	□□□□□ -1.62
RTR1	YER139C	MSC2	Q03455	724 aa		4.94	□□□□□ -1.62
RTR1	YER139C	MLS1	P30952	554 aa		4.93	□□□□□ -1.62
RTR1	YER139C	PLB1	P39105	664 aa		4.92	□□□□□ -1.62
RTR1	YER139C	HXT13	P39924	564 aa		4.92	□□□□□ -1.62
RTR1	YER139C	SIP5	P40210	489 aa	Known RBP	4.92	□□□□□ -1.62
RTR1	YER139C	THI12	P42883	340 aa		4.92	□□□□□ -1.62
RTR1	YER139C	THI5	P43534	340 aa		4.92	□□□□□ -1.62
RTR1	YER139C	THI11	P47183	340 aa		4.92	□□□□□ -1.62
RTR1	YER139C	HXT17	P53631	564 aa		4.92	□□□□□ -1.62
RTR1	YER139C	HXT15	P54854	567 aa		4.92	□□□□□ -1.62
RTR1	YER139C	ATG13	Q06628	738 aa		4.92	□□□□□ -1.62
RTR1	YER139C	THI13	Q07748	340 aa		4.92	□□□□□ -1.62
RTR1	YER139C	BAS1	P22035	811 aa		4.91	□□□□□ -1.62
RTR1	YER139C	PRE9	P23638	258 aa	Known RBP	4.91	□□□□□ -1.62
RTR1	YER139C	SYP1	P25623	870 aa	Known RBP	4.91	□□□□□ -1.62
RTR1	YER139C	SSF1	P38789	453 aa	Predicted RBP	4.91	□□□□□ -1.62
RTR1	YER139C	MSC6	Q08818	692 aa	Known RBP	4.91	□□□□□ -1.62
RTR1	YER139C	CNN1	P43618	361 aa		4.9	□□□□□ -1.63
RTR1	YER139C	ENT3	P47160	408 aa		4.9	□□□□□ -1.63
RTR1	YER139C	GNP1	P48813	663 aa		4.9	□□□□□ -1.63
RTR1	YER139C	MCD1	Q12158	566 aa		4.9	□□□□□ -1.63
RTR1	YER139C	ACE2	P21192	770 aa		4.89	□□□□□ -1.63
RTR1	YER139C	PEP7	P32609	515 aa		4.89	□□□□□ -1.63
RTR1	YER139C	SEC8	P32855	1065 aa		4.89	□□□□□ -1.63
RTR1	YER139C	MND2	P40577	368 aa		4.89	□□□□□ -1.63
RTR1	YER139C	PPM2	Q08282	695 aa		4.89	□□□□□ -1.63
RTR1	YER139C	DBP5	P20449	482 aa	Known RBP	4.88	□□□□□ -1.63
RTR1	YER139C	STM1	P39015	273 aa	Known RBP	4.88	□□□□□ -1.63
RTR1	YER139C	MRPS18	P42847	217 aa		4.88	□□□□□ -1.63
RTR1	YER139C	YGR122W	P53272	402 aa		4.88	□□□□□ -1.63
RTR1	YER139C	MRL1	Q06815	381 aa		4.88	□□□□□ -1.63
RTR1	YER139C	TPO1	Q07824	586 aa		4.88	□□□□□ -1.63
RTR1	YER139C	BI4	P03879	638 aa		4.87	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 59.5 ms