RNA–Protein interactions for RNA: YER029C

SMB1, Transcript of Core Sm protein Sm B, yeast

Gene SMB1, Length 591 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMB1	YER029C	CCZ1	P38273	704 aa		4.25	□□□□□ -1.73
SMB1	YER029C	FYV10	P40492	516 aa		4.25	□□□□□ -1.73
SMB1	YER029C	SEC26	P41810	973 aa	Known RBP	4.25	□□□□□ -1.73
SMB1	YER029C	HEM13	P11353	328 aa	Known RBP	4.24	□□□□□ -1.73
SMB1	YER029C	HEM3	P28789	327 aa		4.24	□□□□□ -1.73
SMB1	YER029C	PMI40	P29952	429 aa	Known RBP	4.24	□□□□□ -1.73
SMB1	YER029C	RDH54	P38086	958 aa		4.24	□□□□□ -1.73
SMB1	YER029C	PIC2	P40035	300 aa		4.24	□□□□□ -1.73
SMB1	YER029C	MNN10	P50108	393 aa	Known RBP	4.24	□□□□□ -1.73
SMB1	YER029C	MCM6	P53091	1017 aa	Known RBP	4.24	□□□□□ -1.73
SMB1	YER029C	YGR122W	P53272	402 aa		4.24	□□□□□ -1.73
SMB1	YER029C	ADI1	Q03677	179 aa		4.24	□□□□□ -1.73
SMB1	YER029C	NTO1	Q12311	748 aa		4.24	□□□□□ -1.73
SMB1	YER029C	SEC23	P15303	768 aa	Known RBP	4.23	□□□□□ -1.73
SMB1	YER029C	KAR2	P16474	682 aa	Known RBP	4.23	□□□□□ -1.73
SMB1	YER029C	MSH3	P25336	1018 aa		4.23	□□□□□ -1.73
SMB1	YER029C	MCM2	P29469	868 aa		4.23	□□□□□ -1.73
SMB1	YER029C	PEX28	P38848	579 aa		4.23	□□□□□ -1.73
SMB1	YER029C	VPS53	P47061	822 aa		4.23	□□□□□ -1.73
SMB1	YER029C	PLB2	Q03674	706 aa		4.23	□□□□□ -1.73
SMB1	YER029C	TMA10	Q06177	86 aa		4.23	□□□□□ -1.73
SMB1	YER029C	RCL1	Q08096	367 aa	Predicted RBP	4.23	□□□□□ -1.73
SMB1	YER029C	OXR1	Q08952	273 aa		4.23	□□□□□ -1.73
SMB1	YER029C	CYC8	P14922	966 aa		4.22	□□□□□ -1.73
SMB1	YER029C	VMA4	P22203	233 aa	Known RBP	4.22	□□□□□ -1.73
SMB1	YER029C	CDC20	P26309	610 aa		4.22	□□□□□ -1.73
SMB1	YER029C	LST4	P34239	828 aa		4.22	□□□□□ -1.73
SMB1	YER029C	RXT3	Q07458	294 aa		4.22	□□□□□ -1.73
SMB1	YER029C	ACK1	Q07622	623 aa	Predicted RBP	4.22	□□□□□ -1.73
SMB1	YER029C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.74	not detected
SMB1	YER029C	RAD2	P07276	1031 aa		4.21	□□□□□ -1.74
SMB1	YER029C	RSM26	P47141	266 aa		4.21	□□□□□ -1.74
SMB1	YER029C	YGL140C	P53120	1219 aa		4.21	□□□□□ -1.74
SMB1	YER029C	PEX13	P80667	386 aa		4.21	□□□□□ -1.74
SMB1	YER029C	RKM2	Q03942	479 aa		4.21	□□□□□ -1.74
SMB1	YER029C	RSB1	Q08417	382 aa		4.21	□□□□□ -1.74
SMB1	YER029C	PRE9	P23638	258 aa	Known RBP	4.2	□□□□□ -1.74
SMB1	YER029C	CHS7	P38843	316 aa		4.2	□□□□□ -1.74
SMB1	YER029C	GNP1	P48813	663 aa		4.2	□□□□□ -1.74
SMB1	YER029C	SPR28	Q04921	423 aa		4.2	□□□□□ -1.74
SMB1	YER029C	ASF1	P32447	279 aa		4.19	□□□□□ -1.74
SMB1	YER029C	SQT1	P35184	431 aa		4.19	□□□□□ -1.74
SMB1	YER029C	BAP2	P38084	609 aa		4.19	□□□□□ -1.74
SMB1	YER029C	MGE1	P38523	228 aa		4.19	□□□□□ -1.74
SMB1	YER029C	RPS26A	P39938	119 aa	Known RBP	4.19	□□□□□ -1.74
SMB1	YER029C	RPS26B	P39939	119 aa	Known RBP	4.19	□□□□□ -1.74
SMB1	YER029C	TNA1	P53322	534 aa		4.19	□□□□□ -1.74
SMB1	YER029C	GPB1	Q08886	897 aa		4.19	□□□□□ -1.74
SMB1	YER029C	GAL10	P04397	699 aa		4.18	□□□□□ -1.74
SMB1	YER029C	SEC8	P32855	1065 aa		4.18	□□□□□ -1.74
SMB1	YER029C	PIK1	P39104	1066 aa		4.18	□□□□□ -1.74
SMB1	YER029C	PHO23	P50947	330 aa		4.18	□□□□□ -1.74
SMB1	YER029C	RSM24	Q03976	319 aa		4.18	□□□□□ -1.74
SMB1	YER029C	MCD1	Q12158	566 aa		4.18	□□□□□ -1.74
SMB1	YER029C	CMP2	P14747	604 aa		4.17	□□□□□ -1.74
SMB1	YER029C	KIP1	P28742	1111 aa		4.17	□□□□□ -1.74
SMB1	YER029C	AFG2	P32794	780 aa		4.17	□□□□□ -1.74
SMB1	YER029C	ADD66	P36040	267 aa		4.17	□□□□□ -1.74
SMB1	YER029C	HXT13	P39924	564 aa		4.17	□□□□□ -1.74
SMB1	YER029C	MRPS18	P42847	217 aa		4.17	□□□□□ -1.74
SMB1	YER029C	HXT17	P53631	564 aa		4.17	□□□□□ -1.74
SMB1	YER029C	HXT15	P54854	567 aa		4.17	□□□□□ -1.74
SMB1	YER029C	HOS3	Q02959	697 aa	Known RBP	4.17	□□□□□ -1.74
SMB1	YER029C	SPO21	Q12411	609 aa		4.17	□□□□□ -1.74
SMB1	YER029C	TAF13	P11747	167 aa		4.16	□□□□□ -1.74
SMB1	YER029C	GPB2	P39717	880 aa		4.16	□□□□□ -1.74
SMB1	YER029C	PBP1	P53297	722 aa	Known RBP	4.16	□□□□□ -1.74
SMB1	YER029C	ESF1	Q06344	628 aa	Known RBP	4.16	□□□□□ -1.74
SMB1	YER029C	PMA1	P05030	918 aa	Known RBP	4.15	□□□□□ -1.75
SMB1	YER029C	CDC6	P09119	513 aa		4.15	□□□□□ -1.75
SMB1	YER029C	SRM1	P21827	482 aa		4.15	□□□□□ -1.75
SMB1	YER029C	RMD1	Q03441	430 aa		4.15	□□□□□ -1.75
SMB1	YER029C	OYE2	Q03558	400 aa	Known RBP	4.15	□□□□□ -1.75
SMB1	YER029C	SNF5	P18480	905 aa		4.14	□□□□□ -1.75
SMB1	YER029C	RFC5	P38251	354 aa		4.14	□□□□□ -1.75
SMB1	YER029C	SIW14	P53965	281 aa		4.14	□□□□□ -1.75
SMB1	YER029C	KIN4	Q01919	800 aa		4.14	□□□□□ -1.75
SMB1	YER029C	ROD1	Q02805	837 aa		4.14	□□□□□ -1.75
SMB1	YER029C	YAP6	Q03935	383 aa		4.14	□□□□□ -1.75
SMB1	YER029C	EST2	Q06163	884 aa		4.14	□□□□□ -1.75
SMB1	YER029C	GCR1	P07261	785 aa		4.13	□□□□□ -1.75
SMB1	YER029C	DUT1	P33317	147 aa		4.13	□□□□□ -1.75
SMB1	YER029C	DEF1	P35732	738 aa	Known RBP	4.13	□□□□□ -1.75
SMB1	YER029C	ENT3	P47160	408 aa		4.13	□□□□□ -1.75
SMB1	YER029C	VPS62	P53285	467 aa		4.13	□□□□□ -1.75
SMB1	YER029C	YLR224W	Q05947	369 aa		4.13	□□□□□ -1.75
SMB1	YER029C	MSS4	P38994	779 aa		4.12	□□□□□ -1.75
SMB1	YER029C	RAT1	Q02792	1006 aa	Known RBP	4.12	□□□□□ -1.75
SMB1	YER029C	PPM2	Q08282	695 aa		4.12	□□□□□ -1.75
SMB1	YER029C	PTC5	Q12511	572 aa		4.12	□□□□□ -1.75
SMB1	YER029C	DCG1	P32460	244 aa		4.11	□□□□□ -1.75
SMB1	YER029C	MKK2	P32491	506 aa		4.11	□□□□□ -1.75
SMB1	YER029C	RPN3	P40016	523 aa	Known RBP	4.11	□□□□□ -1.75
SMB1	YER029C	MRL1	Q06815	381 aa		4.11	□□□□□ -1.75
SMB1	YER029C	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.11	□□□□□ -1.75	not detected
SMB1	YER029C	RIB2	Q12362	591 aa	Known RBP	4.11	□□□□□ -1.75
SMB1	YER029C	DED1	P06634	604 aa	Known RBP	4.1	□□□□□ -1.75
SMB1	YER029C	KIN2	P13186	1147 aa	Known RBP	4.1	□□□□□ -1.75
SMB1	YER029C	GTF1	P53260	183 aa	Predicted RBP	4.1	□□□□□ -1.75
SMB1	YER029C	OAR1	P35731	278 aa		4.09	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 35.8 ms