RNA–Protein interactions for RNA: YDR312W

SSF2, Transcript of Protein required for ribosomal large subunit maturation, yeast

Gene SSF2, Length 1,362 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSF2	YDR312W	NBA1	Q08229	501 aa	Known RBP	4.28	□□□□□ -1.72
SSF2	YDR312W	YPL260W	Q08977	551 aa		4.28	□□□□□ -1.72
SSF2	YDR312W	YDL177C	Q12257	170 aa		4.28	□□□□□ -1.72
SSF2	YDR312W	BAP2	P38084	609 aa		4.27	□□□□□ -1.73
SSF2	YDR312W	ETP1	P38748	585 aa	Known RBP	4.27	□□□□□ -1.73
SSF2	YDR312W	RPN3	P40016	523 aa	Known RBP	4.27	□□□□□ -1.73
SSF2	YDR312W	SNU71	P53207	620 aa	Known RBP	4.27	□□□□□ -1.73
SSF2	YDR312W	TNA1	P53322	534 aa		4.27	□□□□□ -1.73
SSF2	YDR312W	CCZ1	P38273	704 aa		4.27	□□□□□ -1.73
SSF2	YDR312W	MRPL22	P53881	309 aa		4.27	□□□□□ -1.73
SSF2	YDR312W	RMD1	Q03441	430 aa		4.27	□□□□□ -1.73
SSF2	YDR312W	SPO21	Q12411	609 aa		4.27	□□□□□ -1.73
SSF2	YDR312W	SPS1	P08458	490 aa		4.26	□□□□□ -1.73
SSF2	YDR312W	SNF5	P18480	905 aa		4.26	□□□□□ -1.73
SSF2	YDR312W	SYP1	P25623	870 aa	Known RBP	4.26	□□□□□ -1.73
SSF2	YDR312W	RGD1	P38339	666 aa		4.26	□□□□□ -1.73
SSF2	YDR312W	KOG1	P38873	1557 aa		4.25	□□□□□ -1.73
SSF2	YDR312W	PRP6	P19735	899 aa	Predicted RBP	4.25	□□□□□ -1.73
SSF2	YDR312W	THI80	P35202	319 aa		4.25	□□□□□ -1.73
SSF2	YDR312W	PAM1	P37304	830 aa	Known RBP	4.25	□□□□□ -1.73
SSF2	YDR312W	PIK1	P39104	1066 aa		4.25	□□□□□ -1.73
SSF2	YDR312W	CNN1	P43618	361 aa		4.25	□□□□□ -1.73
SSF2	YDR312W	ENV11	P53246	860 aa		4.25	□□□□□ -1.73
SSF2	YDR312W	RTT10	Q08924	1013 aa		4.25	□□□□□ -1.73
SSF2	YDR312W	SWR1	Q05471	1514 aa		4.24	□□□□□ -1.73
SSF2	YDR312W	DBP5	P20449	482 aa	Known RBP	4.24	□□□□□ -1.73
SSF2	YDR312W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.24	□□□□□ -1.73	RIP-Chip
SSF2	YDR312W	RAD27	P26793	382 aa		4.24	□□□□□ -1.73
SSF2	YDR312W	MLS1	P30952	554 aa		4.24	□□□□□ -1.73
SSF2	YDR312W	AIM3	P38266	947 aa	Known RBP	4.24	□□□□□ -1.73
SSF2	YDR312W	SNO2	P53823	222 aa		4.24	□□□□□ -1.73
SSF2	YDR312W	RSB1	Q08417	382 aa		4.24	□□□□□ -1.73
SSF2	YDR312W	YER152C	P10356	443 aa		4.23	□□□□□ -1.73
SSF2	YDR312W	PET112	P33893	541 aa		4.23	□□□□□ -1.73
SSF2	YDR312W	RER2	P35196	286 aa		4.23	□□□□□ -1.73
SSF2	YDR312W	SEC26	P41810	973 aa	Known RBP	4.23	□□□□□ -1.73
SSF2	YDR312W	JIP5	Q06214	492 aa	Predicted RBP	4.23	□□□□□ -1.73
SSF2	YDR312W	MPH1	P40562	993 aa		4.22	□□□□□ -1.73
SSF2	YDR312W	RIM8	P53179	542 aa		4.22	□□□□□ -1.73
SSF2	YDR312W	TMA46	Q12000	345 aa	Known RBP	4.22	□□□□□ -1.73
SSF2	YDR312W	SOD2	P00447	233 aa		4.21	□□□□□ -1.74
SSF2	YDR312W	DUT1	P33317	147 aa		4.21	□□□□□ -1.74
SSF2	YDR312W	ABZ1	P37254	787 aa	Predicted RBP	4.21	□□□□□ -1.74
SSF2	YDR312W	YFL054C	P43549	646 aa		4.21	□□□□□ -1.74
SSF2	YDR312W	HNT2	P49775	206 aa		4.21	□□□□□ -1.74
SSF2	YDR312W	TIF35	Q04067	274 aa	Known RBP	4.21	□□□□□ -1.74
SSF2	YDR312W	SVF1	Q05515	481 aa		4.21	□□□□□ -1.74
SSF2	YDR312W	ESC8	Q08119	714 aa		4.21	□□□□□ -1.74
SSF2	YDR312W	YPL277C	Q08989	487 aa		4.2	□□□□□ -1.74
SSF2	YDR312W	RPS13	P05756	151 aa	Known RBP	4.19	□□□□□ -1.74
SSF2	YDR312W	CDC34	P14682	295 aa		4.19	□□□□□ -1.74
SSF2	YDR312W	YCR015C	P25616	317 aa		4.19	□□□□□ -1.74
SSF2	YDR312W	MNR2	P35724	969 aa		4.19	□□□□□ -1.74
SSF2	YDR312W	MCM7	P38132	845 aa		4.19	□□□□□ -1.74
SSF2	YDR312W	SGD1	Q06132	899 aa		4.19	□□□□□ -1.74
SSF2	YDR312W	YOR352W	Q08816	343 aa		4.19	□□□□□ -1.74
SSF2	YDR312W	TOD6	P34219	525 aa		4.18	□□□□□ -1.74
SSF2	YDR312W	FLR1	P38124	548 aa		4.18	□□□□□ -1.74
SSF2	YDR312W	RFC5	P38251	354 aa		4.18	□□□□□ -1.74
SSF2	YDR312W	MAD1	P40957	749 aa		4.18	□□□□□ -1.74
SSF2	YDR312W	TAF1	P46677	1066 aa		4.18	□□□□□ -1.74
SSF2	YDR312W	NOP7	P53261	605 aa	Known RBP	4.18	□□□□□ -1.74
SSF2	YDR312W	VPS16	Q03308	798 aa		4.18	□□□□□ -1.74
SSF2	YDR312W	GNT1	Q12096	491 aa		4.18	□□□□□ -1.74
SSF2	YDR312W	CYC1	P00044	109 aa	Predicted RBP	4.17	□□□□□ -1.74
SSF2	YDR312W	TRP2	P00899	507 aa	Known RBP	4.17	□□□□□ -1.74
SSF2	YDR312W	BAS1	P22035	811 aa		4.17	□□□□□ -1.74
SSF2	YDR312W	LYP1	P32487	611 aa		4.17	□□□□□ -1.74
SSF2	YDR312W	YKL222C	P35995	705 aa		4.17	□□□□□ -1.74
SSF2	YDR312W	LAM1	P38851	1228 aa		4.17	□□□□□ -1.74
SSF2	YDR312W	MET10	P39692	1035 aa		4.17	□□□□□ -1.74
SSF2	YDR312W	EEB1	Q02891	456 aa		4.17	□□□□□ -1.74
SSF2	YDR312W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
SSF2	YDR312W	YDR132C	Q03900	495 aa		4.17	□□□□□ -1.74
SSF2	YDR312W	RSM24	Q03976	319 aa		4.17	□□□□□ -1.74
SSF2	YDR312W	PIN2	Q12057	282 aa		4.17	□□□□□ -1.74
SSF2	YDR312W	SVS1	Q12254	260 aa		4.17	□□□□□ -1.74
SSF2	YDR312W	SPA2	P23201	1466 aa	Known RBP	4.17	□□□□□ -1.74
SSF2	YDR312W	RPL11A	P0C0W9	174 aa	Known RBP	4.16	□□□□□ -1.74
SSF2	YDR312W	CLN2	P20438	545 aa		4.16	□□□□□ -1.74
SSF2	YDR312W	MEF2	P39677	819 aa		4.16	□□□□□ -1.74
SSF2	YDR312W	GIP4	P39732	760 aa		4.16	□□□□□ -1.74
SSF2	YDR312W	MXR1	P40029	184 aa		4.16	□□□□□ -1.74
SSF2	YDR312W	FAA4	P47912	694 aa	Known RBP	4.16	□□□□□ -1.74
SSF2	YDR312W	ATG13	Q06628	738 aa		4.16	□□□□□ -1.74
SSF2	YDR312W	RPL11B	Q3E757	174 aa	Predicted RBP	4.16	□□□□□ -1.74
SSF2	YDR312W	NAP1	P25293	417 aa	Known RBP	4.15	□□□□□ -1.74
SSF2	YDR312W	TYW3	P53177	273 aa		4.15	□□□□□ -1.74
SSF2	YDR312W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.15	□□□□□ -1.74	not detected
SSF2	YDR312W	GDE1	Q02979	1223 aa		4.15	□□□□□ -1.74
SSF2	YDR312W	GCN5	Q03330	439 aa		4.15	□□□□□ -1.74
SSF2	YDR312W	GAL10	P04397	699 aa		4.14	□□□□□ -1.75
SSF2	YDR312W	KIN2	P13186	1147 aa	Known RBP	4.14	□□□□□ -1.75
SSF2	YDR312W	CMP2	P14747	604 aa		4.14	□□□□□ -1.75
SSF2	YDR312W	SRM1	P21827	482 aa		4.14	□□□□□ -1.75
SSF2	YDR312W	DBP2	P24783	546 aa	Known RBP	4.14	□□□□□ -1.75
SSF2	YDR312W	UGA2	P38067	497 aa		4.14	□□□□□ -1.75
SSF2	YDR312W	PNT1	P38969	423 aa		4.14	□□□□□ -1.75
SSF2	YDR312W	GEM1	P39722	662 aa		4.14	□□□□□ -1.75
SSF2	YDR312W	VAC8	P39968	578 aa		4.14	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 48.8 ms