RNA–Protein interactions for RNA: NME1

NME1, Transcript of RNA component of RNase MRP, yeastyeast

Gene NME1, Length 340 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NME1NME1 PFD1P46988 109 aa11.34□□□□□ -0.59
NME1NME1 MBP1P39678 833 aa11.33□□□□□ -0.6
NME1NME1 YPL260WQ08977 551 aa11.33□□□□□ -0.6
NME1NME1 RET1P22276 1149 aaKnown RBP11.32□□□□□ -0.6
NME1NME1 TIM23P32897 222 aa11.32□□□□□ -0.6
NME1NME1 NNK1P36003 928 aa11.32□□□□□ -0.6
NME1NME1 FPR3P38911 411 aaKnown RBP11.32□□□□□ -0.6
NME1NME1 TY1A-NL1Q12391 440 aaKnown RBP11.32□□□□□ -0.6
NME1NME1 MET6P05694 767 aaKnown RBP11.31□□□□□ -0.6
NME1NME1 HUL4P40985 892 aa11.31□□□□□ -0.6
NME1NME1 UTP8P53276 713 aaKnown RBP11.31□□□□□ -0.6
NME1NME1 NCE103P53615 221 aa11.31□□□□□ -0.6
NME1NME1 YLR125WQ12138 136 aa11.31□□□□□ -0.6
NME1NME1 PHO8P11491 566 aa11.3□□□□□ -0.6
NME1NME1 SBE2P42223 864 aaKnown RBP11.3□□□□□ -0.6
NME1NME1 ALR2P43553 858 aa11.3□□□□□ -0.6
NME1NME1 YLR257WQ06146 321 aaKnown RBP11.3□□□□□ -0.6
NME1NME1 SPP382Q06411 708 aaPredicted RBP11.3□□□□□ -0.6
NME1NME1 SMY2P32909 740 aaKnown RBP11.29□□□□□ -0.6
NME1NME1 SFA1P32771 386 aa11.28□□□□□ -0.6
NME1NME1 GPT2P36148 743 aa11.28□□□□□ -0.6
NME1NME1 MSH4P40965 878 aaPredicted RBP11.28□□□□□ -0.6
NME1NME1 UBX5Q06682 500 aa11.28□□□□□ -0.6
NME1NME1 HRK1Q08732 759 aaKnown RBP11.28□□□□□ -0.6
NME1NME1 SPO21Q12411 609 aa11.28□□□□□ -0.6
NME1NME1 CAN1P04817 590 aa11.27□□□□□ -0.61
NME1NME1 KIP1P28742 1111 aa11.27□□□□□ -0.61
NME1NME1 SIP5P40210 489 aaKnown RBP11.26□□□□□ -0.61
NME1NME1 TPO2P53283 614 aa11.26□□□□□ -0.61
NME1NME1 GAS5Q08193 484 aa11.26□□□□□ -0.61
NME1NME1 TRK2P28584 889 aa11.25□□□□□ -0.61
NME1NME1 SCT1P32784 759 aa11.25□□□□□ -0.61
NME1NME1 BUD9P53226 547 aa11.25□□□□□ -0.61
NME1NME1 YER152CP10356 443 aa11.24□□□□□ -0.61
NME1NME1 RSC6P25632 483 aa11.24□□□□□ -0.61
NME1NME1 YDL124WQ07551 312 aaKnown RBP11.24□□□□□ -0.61
NME1NME1 TAF8Q03750 510 aa11.23□□□□□ -0.61
NME1NME1 THI72Q08579 599 aa11.23□□□□□ -0.61
NME1NME1 THI4P32318 326 aa11.22□□□□□ -0.61
NME1NME1 GPB2P39717 880 aa11.22□□□□□ -0.61
NME1NME1 POB3Q04636 552 aaKnown RBP11.22□□□□□ -0.61
NME1NME1 ERR1P0CX10 437 aa11.21□□□□□ -0.61
NME1NME1 ERR2P0CX11 437 aa11.21□□□□□ -0.61
NME1NME1 CDC11P32458 415 aa11.21□□□□□ -0.61
NME1NME1 CCC2P38995 1004 aa11.21□□□□□ -0.61
NME1NME1 AI3P03877 415 aa11.2□□□□□ -0.62
NME1NME1 MCX1P38323 520 aaPredicted RBP11.2□□□□□ -0.62
NME1NME1 PNT1P38969 423 aa11.2□□□□□ -0.62
NME1NME1 YJL045WP47052 634 aa11.2□□□□□ -0.62
NME1NME1 TPP1Q03796 238 aa11.2□□□□□ -0.62
NME1NME1 YDR306CQ06640 478 aa11.2□□□□□ -0.62
NME1NME1 RPL11AP0C0W9 174 aaKnown RBP11.19□□□□□ -0.62
NME1NME1 RPS4AP0CX35 261 aaKnown RBP11.19□□□□□ -0.62
NME1NME1 RPS4BP0CX36 261 aaKnown RBP11.19□□□□□ -0.62
NME1NME1 NMD3P38861 518 aaKnown RBP11.19□□□□□ -0.62
NME1NME1 RPN3P40016 523 aaKnown RBP11.19□□□□□ -0.62
NME1NME1 ALT1P52893 592 aa11.19□□□□□ -0.62
NME1NME1 TDA6Q06466 467 aa11.19□□□□□ -0.62
NME1NME1 RPL11BQ3E757 174 aaPredicted RBP11.19□□□□□ -0.62
NME1NME1 MNN1P39106 762 aa11.18□□□□□ -0.62
NME1NME1 GIC2Q06648 383 aa11.18□□□□□ -0.62
NME1NME1 AAR2P32357 355 aaPredicted RBP11.17□□□□□ -0.62
NME1NME1 GUS1P46655 708 aaKnown RBP RIP-Chip data11.17□□□□□ -0.62not detected
NME1NME1 PUS7Q08647 676 aaKnown RBP11.17□□□□□ -0.62
NME1NME1 HBS1P32769 611 aaKnown RBP11.16□□□□□ -0.62
NME1NME1 RTA1P53047 317 aa11.16□□□□□ -0.62
NME1NME1 UTP14Q04500 899 aaKnown RBP11.16□□□□□ -0.62
NME1NME1 DUS3Q06053 668 aaKnown RBP11.16□□□□□ -0.62
NME1NME1 MXR1P40029 184 aa11.15□□□□□ -0.62
NME1NME1 YFL066CP43538 392 aa11.15□□□□□ -0.62
NME1NME1 NSG2P53898 299 aa11.15□□□□□ -0.62
NME1NME1 NPL3Q01560 414 aaKnown RBP RIP-Chip data11.15□□□□□ -0.62not detected
NME1NME1 HOS3Q02959 697 aaKnown RBP11.15□□□□□ -0.62
NME1NME1 HBN1Q96VH4 193 aa11.15□□□□□ -0.62
NME1NME1 PPH3P32345 308 aa11.14□□□□□ -0.63
NME1NME1 ARI1P53111 347 aaKnown RBP11.14□□□□□ -0.63
NME1NME1 TNA1P53322 534 aa11.14□□□□□ -0.63
NME1NME1 DBP2P24783 546 aaKnown RBP11.13□□□□□ -0.63
NME1NME1 YSC84P32793 468 aa11.13□□□□□ -0.63
NME1NME1 BET3P36149 193 aa11.13□□□□□ -0.63
NME1NME1 PRY1P47032 299 aa11.13□□□□□ -0.63
NME1NME1 ACM1Q08981 209 aa11.13□□□□□ -0.63
NME1NME1 GEM1P39722 662 aa11.12□□□□□ -0.63
NME1NME1 SRP1Q02821 542 aaKnown RBP11.12□□□□□ -0.63
NME1NME1 YGR161W-CQ3E744 92 aa11.12□□□□□ -0.63
NME1NME1 COQ4O13525 335 aa11.11□□□□□ -0.63
NME1NME1 TOM70P07213 617 aaKnown RBP11.1□□□□□ -0.63
NME1NME1 YBR284WP38150 797 aa11.1□□□□□ -0.63
NME1NME1 SIT1P39980 628 aa11.09□□□□□ -0.63
NME1NME1 EAR1Q03212 550 aa11.09□□□□□ -0.63
NME1NME1 ADE8P04161 214 aa11.08□□□□□ -0.64
NME1NME1 MSH2P25847 964 aa11.08□□□□□ -0.64
NME1NME1 AKR1P39010 764 aa11.08□□□□□ -0.64
NME1NME1 MMM1P41800 426 aa11.08□□□□□ -0.64
NME1NME1 HSV2P50079 448 aaPredicted RBP11.08□□□□□ -0.64
NME1NME1 YDR215CQ12240 137 aa11.08□□□□□ -0.64
NME1NME1 THS1P04801 734 aaKnown RBP11.07□□□□□ -0.64
NME1NME1 PRO1P32264 428 aa11.07□□□□□ -0.64
NME1NME1 DOM34P33309 386 aa11.07□□□□□ -0.64
NME1NME1 MDJ1P35191 511 aa11.07□□□□□ -0.64
Retrieved 100 of 5,963 RNA–protein pairs in 33 ms