RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-231ENST00000640499 AKT1S1Q96B36 256 aa35.54■■■■□ 3.28
VEGFA-231ENST00000640499 PDGFDQ9GZP0 370 aaPredicted RBP35.53■■■■□ 3.28
VEGFA-231ENST00000640499 SLC4A9Q96Q91 983 aa35.52■■■■□ 3.28
VEGFA-231ENST00000640499 LOC102724428A0A0B4J2F2 783 aa35.51■■■■□ 3.28
VEGFA-231ENST00000640499 SIK1P57059 783 aa35.51■■■■□ 3.28
VEGFA-231ENST00000640499 STK32BQ9NY57 414 aa35.51■■■■□ 3.28
VEGFA-231ENST00000640499 TAF1LQ8IZX4 1826 aa35.5■■■■□ 3.27
VEGFA-231ENST00000640499 CEMIPQ8WUJ3 1361 aa35.49■■■■□ 3.27
VEGFA-231ENST00000640499 ADAMTS8Q9UP79 889 aa35.48■■■■□ 3.27
VEGFA-231ENST00000640499 C5P01031 1676 aa35.47■■■■□ 3.27
VEGFA-231ENST00000640499 ANP32CO43423 234 aa35.47■■■■□ 3.27
VEGFA-231ENST00000640499 ITPK1Q13572 414 aa35.47■■■■□ 3.27
VEGFA-231ENST00000640499 CASZ1Q86V15 1759 aa35.46■■■■□ 3.27
VEGFA-231ENST00000640499 SIPA1L3O60292 1781 aaPredicted RBP35.46■■■■□ 3.27
VEGFA-231ENST00000640499 DLG5Q8TDM6 1919 aa35.45■■■■□ 3.27
VEGFA-231ENST00000640499 SRCAPQ6ZRS2 3230 aa35.45■■■■□ 3.27
VEGFA-231ENST00000640499 TUBGCP6Q96RT7 1819 aa35.43■■■■□ 3.26
VEGFA-231ENST00000640499 SLC39A6Q13433 755 aa35.43■■■■□ 3.26
VEGFA-231ENST00000640499 DCTN1Q14203 1278 aa35.43■■■■□ 3.26
VEGFA-231ENST00000640499 MCM10Q7L590 875 aa35.43■■■■□ 3.26
VEGFA-231ENST00000640499 NFE2L2Q16236 605 aa35.42■■■■□ 3.26
VEGFA-231ENST00000640499 LINC00116Q8NCU8 138 aa35.42■■■■□ 3.26
VEGFA-231ENST00000640499 PNNQ9H307 717 aaKnown RBP35.42■■■■□ 3.26
VEGFA-231ENST00000640499 ZNF831Q5JPB2 1677 aa35.42■■■■□ 3.26
VEGFA-231ENST00000640499 ATP6V1AP38606 617 aa35.41■■■■□ 3.26
VEGFA-231ENST00000640499 RBM42Q9BTD8 480 aaKnown RBP35.41■■■■□ 3.26
VEGFA-231ENST00000640499 WDR43Q15061 677 aaKnown RBP eCLIP35.4■■■■□ 3.268e-10■□□□□ 9.2
VEGFA-231ENST00000640499 CCDC146Q8IYE0 955 aa35.4■■■■□ 3.26
VEGFA-231ENST00000640499 C4BP0C0L5 1744 aa35.4■■■■□ 3.26
VEGFA-231ENST00000640499 HTATSF1O43719 755 aaKnown RBP35.39■■■■□ 3.26
VEGFA-231ENST00000640499 PTCD1O75127 700 aaKnown RBP35.39■■■■□ 3.26
VEGFA-231ENST00000640499 QSER1Q2KHR3 1735 aa35.38■■■■□ 3.25
VEGFA-231ENST00000640499 AMIGO3Q86WK7 504 aa35.38■■■■□ 3.25
VEGFA-231ENST00000640499 KCPQ6ZWJ8 1503 aa35.37■■■■□ 3.25
VEGFA-231ENST00000640499 PNPLA7Q6ZV29 1317 aa35.37■■■■□ 3.25
VEGFA-231ENST00000640499 MAPK8IP3Q9UPT6 1336 aa35.37■■■■□ 3.25
VEGFA-231ENST00000640499 NEFMP07197 916 aa35.36■■■■□ 3.25
VEGFA-231ENST00000640499 TEFQ10587 303 aa35.36■■■■□ 3.25
VEGFA-231ENST00000640499 RTF1Q92541 710 aaKnown RBP35.35■■■■□ 3.25
VEGFA-231ENST00000640499 TFCP2L1Q9NZI6 479 aa35.34■■■■□ 3.25
VEGFA-231ENST00000640499 UBR2Q8IWV8 1755 aa35.33■■■■□ 3.25
VEGFA-231ENST00000640499 COL5A3P25940 1745 aaPredicted RBP35.33■■■■□ 3.25
VEGFA-231ENST00000640499 TJP1Q07157 1748 aa35.33■■■■□ 3.25
VEGFA-231ENST00000640499 TMPOP42166 694 aaKnown RBP35.33■■■■□ 3.25
VEGFA-231ENST00000640499 SMIM5Q71RC9 77 aa35.33■■■■□ 3.25
VEGFA-231ENST00000640499 RUNDC1Q96C34 613 aa35.33■■■■□ 3.25
VEGFA-231ENST00000640499 KCNQ3O43525 872 aa35.32■■■■□ 3.24
VEGFA-231ENST00000640499 PNISRQ8TF01 805 aaKnown RBP35.31■■■■□ 3.24
VEGFA-231ENST00000640499 THUMPD2Q9BTF0 503 aaKnown RBP35.31■■■■□ 3.24
VEGFA-231ENST00000640499 LRP5O75197 1615 aa35.31■■■■□ 3.24
VEGFA-231ENST00000640499 CICQ96RK0 1608 aaPredicted RBP35.31■■■■□ 3.24
VEGFA-231ENST00000640499 COL23A1Q86Y22 540 aaPredicted RBP35.3■■■■□ 3.24
VEGFA-231ENST00000640499 UBR3Q6ZT12 1888 aa35.3■■■■□ 3.24
VEGFA-231ENST00000640499 ZBTB7AO95365 584 aa35.29■■■■□ 3.24
VEGFA-231ENST00000640499 RIPK4P57078 832 aa35.29■■■■□ 3.24
VEGFA-231ENST00000640499 ZNF790Q6PG37 636 aa35.29■■■■□ 3.24
VEGFA-231ENST00000640499 RRP7AQ9Y3A4 280 aaKnown RBP35.29■■■■□ 3.24
VEGFA-231ENST00000640499 MYH14Q7Z406 1995 aaKnown RBP35.28■■■■□ 3.24
VEGFA-231ENST00000640499 MRS2Q9HD23 443 aa35.28■■■■□ 3.24
VEGFA-231ENST00000640499 BTBD11A6QL63 1104 aa35.26■■■■□ 3.24
VEGFA-231ENST00000640499 HMGB2P26583 209 aaKnown RBP35.26■■■■□ 3.24
VEGFA-231ENST00000640499 DNAJC10Q8IXB1 793 aa35.26■■■■□ 3.24
VEGFA-231ENST00000640499 ZNF496Q96IT1 587 aaPredicted RBP35.26■■■■□ 3.24
VEGFA-231ENST00000640499 AK7Q96M32 723 aa35.25■■■■□ 3.23
VEGFA-231ENST00000640499 RC3H1Q5TC82 1133 aaKnown RBP35.23■■■■□ 3.23
VEGFA-231ENST00000640499 TRIM35Q9UPQ4 493 aa35.23■■■■□ 3.23
VEGFA-231ENST00000640499 ATF5Q9Y2D1 282 aaPredicted RBP35.23■■■■□ 3.23
VEGFA-231ENST00000640499 CNTNAP4Q9C0A0 1308 aa35.23■■■■□ 3.23
VEGFA-231ENST00000640499 TAF7Q15545 349 aaPredicted RBP35.22■■■■□ 3.23
VEGFA-231ENST00000640499 MIS18AQ9NYP9 233 aa35.22■■■■□ 3.23
VEGFA-231ENST00000640499 GNPATO15228 680 aa35.21■■■■□ 3.23
VEGFA-231ENST00000640499 PTGER2P43116 358 aa35.21■■■■□ 3.23
VEGFA-231ENST00000640499 NEUROD2Q15784 382 aa35.21■■■■□ 3.23
VEGFA-231ENST00000640499 TTC5Q8N0Z6 440 aa35.21■■■■□ 3.23
VEGFA-231ENST00000640499 VSIG10Q8N0Z9 540 aa35.21■■■■□ 3.23
VEGFA-231ENST00000640499 SPON1Q9HCB6 807 aa35.21■■■■□ 3.23
VEGFA-231ENST00000640499 INTS5Q6P9B9 1019 aaKnown RBP35.2■■■■□ 3.23
VEGFA-231ENST00000640499 MTFR1LQ9H019 292 aa35.2■■■■□ 3.23
VEGFA-231ENST00000640499 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP35.19■■■■□ 3.22
VEGFA-231ENST00000640499 CYP19A1P11511 503 aaPredicted RBP35.19■■■■□ 3.22
VEGFA-231ENST00000640499 CRKLP46109 303 aaKnown RBP35.19■■■■□ 3.22
VEGFA-231ENST00000640499 SGIP1Q9BQI5 828 aa35.19■■■■□ 3.22
VEGFA-231ENST00000640499 HEG1Q9ULI3 1381 aa35.19■■■■□ 3.22
VEGFA-231ENST00000640499 COL24A1Q17RW2 1714 aa35.18■■■■□ 3.22
VEGFA-231ENST00000640499 APAF1O14727 1248 aa35.17■■■■□ 3.22
VEGFA-231ENST00000640499 PHF14O94880 888 aa35.17■■■■□ 3.22
VEGFA-231ENST00000640499 SLC16A10Q8TF71 515 aa35.17■■■■□ 3.22
VEGFA-231ENST00000640499 SSFA2P28290 1259 aa35.16■■■■□ 3.22
VEGFA-231ENST00000640499 RPS6KA4O75676 772 aa35.15■■■■□ 3.22
VEGFA-231ENST00000640499 FLAD1Q8NFF5 587 aa35.15■■■■□ 3.22
VEGFA-231ENST00000640499 KDM3BQ7LBC6 1761 aa35.15■■■■□ 3.22
VEGFA-231ENST00000640499 FMNL2Q96PY5 1086 aa35.14■■■■□ 3.22
VEGFA-231ENST00000640499 MSH5O43196 834 aa35.13■■■■□ 3.21
VEGFA-231ENST00000640499 PRAMEF22A3QJZ6 481 aa35.12■■■■□ 3.21
VEGFA-231ENST00000640499 LMOD3Q0VAK6 560 aa35.12■■■■□ 3.21
VEGFA-231ENST00000640499 RTCBQ9Y3I0 505 aaKnown RBP35.12■■■■□ 3.21
VEGFA-231ENST00000640499 CCDC87Q9NVE4 849 aa35.1■■■■□ 3.21
VEGFA-231ENST00000640499 ARHGEF1Q92888 912 aaKnown RBP35.09■■■■□ 3.21
VEGFA-231ENST00000640499 TRAPPC3LQ5T215 181 aa35.08■■■■□ 3.21
VEGFA-231ENST00000640499 ZBTB1Q9Y2K1 713 aa35.08■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms