RNA–Protein interactions for RNA: ENST00000637897.1

PNKP-229, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 190 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-229ENST00000637897 ADAMTS7Q9UKP4 1686 aa10.7□□□□□ -0.7
PNKP-229ENST00000637897 ERVV-2B6SEH9 535 aa10.7□□□□□ -0.7
PNKP-229ENST00000637897 HMOX1P09601 288 aa10.7□□□□□ -0.7
PNKP-229ENST00000637897 PLEKHO1Q53GL0 409 aaPredicted RBP10.7□□□□□ -0.7
PNKP-229ENST00000637897 SMARCC1Q92922 1105 aaPredicted RBP10.7□□□□□ -0.7
PNKP-229ENST00000637897 DCAF5Q96JK2 942 aa10.7□□□□□ -0.7
PNKP-229ENST00000637897 LGR6Q9HBX8 967 aa10.7□□□□□ -0.7
PNKP-229ENST00000637897 SCN11AQ9UI33 1791 aa10.7□□□□□ -0.7
PNKP-229ENST00000637897 COL5A3P25940 1745 aaPredicted RBP10.7□□□□□ -0.7
PNKP-229ENST00000637897 ZNF831Q5JPB2 1677 aa10.69□□□□□ -0.7
PNKP-229ENST00000637897 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.69□□□□□ -0.7
PNKP-229ENST00000637897 TJP1Q07157 1748 aa10.68□□□□□ -0.7
PNKP-229ENST00000637897 YBX3P16989 372 aaKnown RBP eCLIP10.68□□□□□ -0.7
PNKP-229ENST00000637897 ATP6V1AP38606 617 aa10.68□□□□□ -0.7
PNKP-229ENST00000637897 MTHFSDQ2M296 383 aaKnown RBP10.68□□□□□ -0.7
PNKP-229ENST00000637897 AMOTQ4VCS5 1084 aa10.68□□□□□ -0.7
PNKP-229ENST00000637897 NFATC2IPQ8NCF5 419 aa10.68□□□□□ -0.7
PNKP-229ENST00000637897 MRC1P22897 1456 aa10.68□□□□□ -0.7
PNKP-229ENST00000637897 PHF14O94880 888 aa10.67□□□□□ -0.7
PNKP-229ENST00000637897 CNGB1Q14028 1251 aaPredicted RBP10.67□□□□□ -0.7
PNKP-229ENST00000637897 VIRMAQ69YN4 1812 aaKnown RBP10.67□□□□□ -0.7
PNKP-229ENST00000637897 GNPATO15228 680 aa10.66□□□□□ -0.7
PNKP-229ENST00000637897 MSH5O43196 834 aa10.66□□□□□ -0.7
PNKP-229ENST00000637897 SSFA2P28290 1259 aa10.66□□□□□ -0.7
PNKP-229ENST00000637897 KIAA1551Q9HCM1 1747 aa10.66□□□□□ -0.7
PNKP-229ENST00000637897 CICQ96RK0 1608 aaPredicted RBP10.66□□□□□ -0.7
PNKP-229ENST00000637897 KCPQ6ZWJ8 1503 aa10.65□□□□□ -0.7
PNKP-229ENST00000637897 RNMTO43148 476 aaKnown RBP10.65□□□□□ -0.7
PNKP-229ENST00000637897 DIAPH1O60610 1272 aaKnown RBP10.65□□□□□ -0.7
PNKP-229ENST00000637897 HSP90AB1P08238 724 aaKnown RBP10.65□□□□□ -0.7
PNKP-229ENST00000637897 POLD1P28340 1107 aa10.65□□□□□ -0.7
PNKP-229ENST00000637897 CABP4P57796 275 aa10.65□□□□□ -0.7
PNKP-229ENST00000637897 SLC39A6Q13433 755 aa10.65□□□□□ -0.7
PNKP-229ENST00000637897 AKAP4Q5JQC9 854 aa10.65□□□□□ -0.7
PNKP-229ENST00000637897 ARHGEF1Q92888 912 aaKnown RBP10.65□□□□□ -0.7
PNKP-229ENST00000637897 PHACTR3Q96KR7 559 aa10.65□□□□□ -0.7
PNKP-229ENST00000637897 AK7Q96M32 723 aa10.65□□□□□ -0.7
PNKP-229ENST00000637897 CNTNAP4Q9C0A0 1308 aa10.64□□□□□ -0.71
PNKP-229ENST00000637897 PTCD1O75127 700 aaKnown RBP10.64□□□□□ -0.71
PNKP-229ENST00000637897 RC3H1Q5TC82 1133 aaKnown RBP10.64□□□□□ -0.71
PNKP-229ENST00000637897 INTS5Q6P9B9 1019 aaKnown RBP10.64□□□□□ -0.71
PNKP-229ENST00000637897 KLHL34Q8N239 644 aa10.64□□□□□ -0.71
PNKP-229ENST00000637897 FLAD1Q8NFF5 587 aa10.64□□□□□ -0.71
PNKP-229ENST00000637897 IL17REQ8NFR9 667 aa10.64□□□□□ -0.71
PNKP-229ENST00000637897 RBM42Q9BTD8 480 aaKnown RBP10.64□□□□□ -0.71
PNKP-229ENST00000637897 SLC52A2Q9HAB3 445 aa10.64□□□□□ -0.71
PNKP-229ENST00000637897 CHD4Q14839 1912 aa10.64□□□□□ -0.71
PNKP-229ENST00000637897 C4AP0C0L4 1744 aa10.64□□□□□ -0.71
PNKP-229ENST00000637897 PPP2R1AP30153 589 aa10.63□□□□□ -0.71
PNKP-229ENST00000637897 ZNF784Q8NCA9 323 aaPredicted RBP10.63□□□□□ -0.71
PNKP-229ENST00000637897 SENP3-EIF4A1A0A087X0R7 540 aa10.62□□□□□ -0.71
PNKP-229ENST00000637897 ZNF316A6NFI3 1004 aaPredicted RBP10.62□□□□□ -0.71
PNKP-229ENST00000637897 RPS6KA4O75676 772 aa10.62□□□□□ -0.71
PNKP-229ENST00000637897 GYS1P13807 737 aa10.62□□□□□ -0.71
PNKP-229ENST00000637897 CRKLP46109 303 aaKnown RBP10.62□□□□□ -0.71
PNKP-229ENST00000637897 C1orf141Q5JVX7 400 aa10.62□□□□□ -0.71
PNKP-229ENST00000637897 DNAJC10Q8IXB1 793 aa10.62□□□□□ -0.71
PNKP-229ENST00000637897 RSPH6AQ9H0K4 717 aa10.62□□□□□ -0.71
PNKP-229ENST00000637897 SRP68Q9UHB9 627 aaKnown RBP10.62□□□□□ -0.71
PNKP-229ENST00000637897 CD2APQ9Y5K6 639 aa10.62□□□□□ -0.71
PNKP-229ENST00000637897 SIPA1L3O60292 1781 aaPredicted RBP10.62□□□□□ -0.71
PNKP-229ENST00000637897 UBR2Q8IWV8 1755 aa10.62□□□□□ -0.71
PNKP-229ENST00000637897 KIF13BQ9NQT8 1826 aa10.61□□□□□ -0.71
PNKP-229ENST00000637897 KCNQ3O43525 872 aa10.6□□□□□ -0.71
PNKP-229ENST00000637897 MMP10P09238 476 aa10.6□□□□□ -0.71
PNKP-229ENST00000637897 CYP19A1P11511 503 aaPredicted RBP10.6□□□□□ -0.71
PNKP-229ENST00000637897 GPR162Q16538 588 aa10.6□□□□□ -0.71
PNKP-229ENST00000637897 WWC3Q9ULE0 1092 aa10.6□□□□□ -0.71
PNKP-229ENST00000637897 RTCBQ9Y3I0 505 aaKnown RBP10.6□□□□□ -0.71
PNKP-229ENST00000637897 U2SURPO15042 1029 aaKnown RBP10.59□□□□□ -0.71
PNKP-229ENST00000637897 DDR1Q08345 913 aa10.59□□□□□ -0.71
PNKP-229ENST00000637897 FKBP8Q14318 412 aa10.59□□□□□ -0.71
PNKP-229ENST00000637897 TRAPPC3LQ5T215 181 aa10.59□□□□□ -0.71
PNKP-229ENST00000637897 BCL2L12Q9HB09 334 aa10.59□□□□□ -0.71
PNKP-229ENST00000637897 CEMIPQ8WUJ3 1361 aa10.59□□□□□ -0.71
PNKP-229ENST00000637897 PXDNLA1KZ92 1463 aa10.59□□□□□ -0.71
PNKP-229ENST00000637897 SOS1Q07889 1333 aaPredicted RBP10.58□□□□□ -0.71
PNKP-229ENST00000637897 C10orf71Q711Q0 1435 aa10.58□□□□□ -0.72
PNKP-229ENST00000637897 N4BP2Q86UW6 1770 aaPredicted RBP10.58□□□□□ -0.72
PNKP-229ENST00000637897 ADRA2BP18089 450 aa10.58□□□□□ -0.72
PNKP-229ENST00000637897 KCNA3P22001 575 aa10.58□□□□□ -0.72
PNKP-229ENST00000637897 PRKAR2BP31323 418 aa10.58□□□□□ -0.72
PNKP-229ENST00000637897 ZBTB1Q9Y2K1 713 aa10.58□□□□□ -0.72
PNKP-229ENST00000637897 USP42Q9H9J4 1324 aaKnown RBP10.58□□□□□ -0.72
PNKP-229ENST00000637897 PELP1Q8IZL8 1130 aaKnown RBP10.57□□□□□ -0.72
PNKP-229ENST00000637897 ZNF496Q96IT1 587 aaPredicted RBP10.57□□□□□ -0.72
PNKP-229ENST00000637897 BRCA1P38398 1863 aaKnown RBP10.57□□□□□ -0.72
PNKP-229ENST00000637897 ADCY9O60503 1353 aa10.56□□□□□ -0.72
PNKP-229ENST00000637897 PRAMEF22A3QJZ6 481 aa10.56□□□□□ -0.72
PNKP-229ENST00000637897 DCAF8L1A6NGE4 600 aa10.56□□□□□ -0.72
PNKP-229ENST00000637897 TM4SF1P30408 202 aa10.56□□□□□ -0.72
PNKP-229ENST00000637897 CEP350Q5VT06 3117 aa10.56□□□□□ -0.72
PNKP-229ENST00000637897 A0A0G2JLW4 131 aa10.55□□□□□ -0.72
PNKP-229ENST00000637897 GNAT3A8MTJ3 354 aa10.55□□□□□ -0.72
PNKP-229ENST00000637897 POLRMTO00411 1230 aaKnown RBP10.55□□□□□ -0.72
PNKP-229ENST00000637897 HMGB2P26583 209 aaKnown RBP10.55□□□□□ -0.72
PNKP-229ENST00000637897 DCTN1Q14203 1278 aa10.55□□□□□ -0.72
PNKP-229ENST00000637897 NLGN1Q8N2Q7 840 aa10.55□□□□□ -0.72
PNKP-229ENST00000637897 PLEKHF1Q96S99 279 aa10.55□□□□□ -0.72
PNKP-229ENST00000637897 CCDC87Q9NVE4 849 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms