RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 COL24A1Q17RW2 1714 aa25.87■■□□□ 1.73
CLN3-260ENST00000637578 NFATC2IPQ8NCF5 419 aa25.87■■□□□ 1.73
CLN3-260ENST00000637578 LINC00116Q8NCU8 138 aa25.87■■□□□ 1.73
CLN3-260ENST00000637578 ATP6V1AP38606 617 aa25.86■■□□□ 1.73
CLN3-260ENST00000637578 FLAD1Q8NFF5 587 aa25.86■■□□□ 1.73
CLN3-260ENST00000637578 SLC4A9Q96Q91 983 aa25.86■■□□□ 1.73
CLN3-260ENST00000637578 ARXQ96QS3 562 aa25.85■■□□□ 1.73
CLN3-260ENST00000637578 LGR6Q9HBX8 967 aa25.85■■□□□ 1.73
CLN3-260ENST00000637578 AMIGO3Q86WK7 504 aa25.84■■□□□ 1.73
CLN3-260ENST00000637578 AK7Q96M32 723 aa25.84■■□□□ 1.73
CLN3-260ENST00000637578 ZNF831Q5JPB2 1677 aa25.84■■□□□ 1.73
CLN3-260ENST00000637578 SCN11AQ9UI33 1791 aa25.84■■□□□ 1.73
CLN3-260ENST00000637578 RNMTO43148 476 aaKnown RBP25.83■■□□□ 1.73
CLN3-260ENST00000637578 FHDC1Q9C0D6 1143 aaPredicted RBP25.82■■□□□ 1.72
CLN3-260ENST00000637578 SLC52A2Q9HAB3 445 aa25.82■■□□□ 1.72
CLN3-260ENST00000637578 NUDCQ9Y266 331 aa25.82■■□□□ 1.72
CLN3-260ENST00000637578 SYT17Q9BSW7 474 aa25.81■■□□□ 1.72
CLN3-260ENST00000637578 RSPH6AQ9H0K4 717 aa25.81■■□□□ 1.72
CLN3-260ENST00000637578 MAP3K5Q99683 1374 aa25.81■■□□□ 1.72
CLN3-260ENST00000637578 MRC1P22897 1456 aa25.81■■□□□ 1.72
CLN3-260ENST00000637578 ADAMTS7Q9UKP4 1686 aa25.81■■□□□ 1.72
CLN3-260ENST00000637578 SSFA2P28290 1259 aa25.8■■□□□ 1.72
CLN3-260ENST00000637578 RBM42Q9BTD8 480 aaKnown RBP25.8■■□□□ 1.72
CLN3-260ENST00000637578 MSH5O43196 834 aa25.79■■□□□ 1.72
CLN3-260ENST00000637578 POLD1P28340 1107 aa25.79■■□□□ 1.72
CLN3-260ENST00000637578 UBR3Q6ZT12 1888 aa25.79■■□□□ 1.72
CLN3-260ENST00000637578 ZNF316A6NFI3 1004 aaPredicted RBP25.78■■□□□ 1.72
CLN3-260ENST00000637578 GAS2L2Q8NHY3 880 aa25.78■■□□□ 1.72
CLN3-260ENST00000637578 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.78■■□□□ 1.72
CLN3-260ENST00000637578 RC3H1Q5TC82 1133 aaKnown RBP25.78■■□□□ 1.72
CLN3-260ENST00000637578 PHACTR3Q96KR7 559 aa25.78■■□□□ 1.72
CLN3-260ENST00000637578 PRKAR2BP31323 418 aa25.77■■□□□ 1.72
CLN3-260ENST00000637578 PTCD1O75127 700 aaKnown RBP25.76■■□□□ 1.71
CLN3-260ENST00000637578 FCHSD2O94868 740 aa25.76■■□□□ 1.71
CLN3-260ENST00000637578 SMIM5Q71RC9 77 aa25.76■■□□□ 1.71
CLN3-260ENST00000637578 GNPATO15228 680 aa25.75■■□□□ 1.71
CLN3-260ENST00000637578 CNTNAP4Q9C0A0 1308 aa25.75■■□□□ 1.71
CLN3-260ENST00000637578 GNAT3A8MTJ3 354 aa25.74■■□□□ 1.71
CLN3-260ENST00000637578 U2AF1L5P0DN76 240 aaPredicted RBP25.74■■□□□ 1.71
CLN3-260ENST00000637578 U2AF1Q01081 240 aaKnown RBP eCLIP25.74■■□□□ 1.71
CLN3-260ENST00000637578 PHF14O94880 888 aa25.73■■□□□ 1.71
CLN3-260ENST00000637578 DDX10Q13206 875 aaKnown RBP25.73■■□□□ 1.71
CLN3-260ENST00000637578 IL17REQ8NFR9 667 aa25.73■■□□□ 1.71
CLN3-260ENST00000637578 COL5A3P25940 1745 aaPredicted RBP25.72■■□□□ 1.71
CLN3-260ENST00000637578 MSL1Q68DK7 614 aa25.72■■□□□ 1.71
CLN3-260ENST00000637578 CICQ96RK0 1608 aaPredicted RBP25.72■■□□□ 1.71
CLN3-260ENST00000637578 RALBP1Q15311 655 aa25.71■■□□□ 1.71
CLN3-260ENST00000637578 RTCBQ9Y3I0 505 aaKnown RBP25.7■■□□□ 1.71
CLN3-260ENST00000637578 CEMIPQ8WUJ3 1361 aa25.69■■□□□ 1.7
CLN3-260ENST00000637578 RPS6KA4O75676 772 aa25.69■■□□□ 1.7
CLN3-260ENST00000637578 SLC39A6Q13433 755 aa25.69■■□□□ 1.7
CLN3-260ENST00000637578 VIRMAQ69YN4 1812 aaKnown RBP25.69■■□□□ 1.7
CLN3-260ENST00000637578 ADRA2BP18089 450 aa25.69■■□□□ 1.7
CLN3-260ENST00000637578 TRAPPC3LQ5T215 181 aa25.68■■□□□ 1.7
CLN3-260ENST00000637578 KCPQ6ZWJ8 1503 aa25.67■■□□□ 1.7
CLN3-260ENST00000637578 MYH14Q7Z406 1995 aaKnown RBP25.67■■□□□ 1.7
CLN3-260ENST00000637578 DCAF8L1A6NGE4 600 aa25.67■■□□□ 1.7
CLN3-260ENST00000637578 CRKLP46109 303 aaKnown RBP25.67■■□□□ 1.7
CLN3-260ENST00000637578 TJP1Q07157 1748 aa25.66■■□□□ 1.7
CLN3-260ENST00000637578 ARHGEF1Q92888 912 aaKnown RBP25.66■■□□□ 1.7
CLN3-260ENST00000637578 VSIG10Q8N0Z9 540 aa25.65■■□□□ 1.7
CLN3-260ENST00000637578 TEFQ10587 303 aa25.65■■□□□ 1.7
CLN3-260ENST00000637578 INTS5Q6P9B9 1019 aaKnown RBP25.65■■□□□ 1.7
CLN3-260ENST00000637578 DNAJC10Q8IXB1 793 aa25.65■■□□□ 1.7
CLN3-260ENST00000637578 PLEKHF1Q96S99 279 aa25.62■■□□□ 1.69
CLN3-260ENST00000637578 HTATSF1O43719 755 aaKnown RBP25.61■■□□□ 1.69
CLN3-260ENST00000637578 CYP19A1P11511 503 aaPredicted RBP25.61■■□□□ 1.69
CLN3-260ENST00000637578 ZNF790Q6PG37 636 aa25.61■■□□□ 1.69
CLN3-260ENST00000637578 NLGN2Q8NFZ4 835 aa25.61■■□□□ 1.69
CLN3-260ENST00000637578 CD2APQ9Y5K6 639 aa25.61■■□□□ 1.69
CLN3-260ENST00000637578 SIPA1L3O60292 1781 aaPredicted RBP25.61■■□□□ 1.69
CLN3-260ENST00000637578 UBR2Q8IWV8 1755 aa25.61■■□□□ 1.69
CLN3-260ENST00000637578 KLHL34Q8N239 644 aa25.61■■□□□ 1.69
CLN3-260ENST00000637578 NLGN1Q8N2Q7 840 aa25.6■■□□□ 1.69
CLN3-260ENST00000637578 CCDC87Q9NVE4 849 aa25.6■■□□□ 1.69
CLN3-260ENST00000637578 RFC4P35249 363 aa25.59■■□□□ 1.69
CLN3-260ENST00000637578 TTC5Q8N0Z6 440 aa25.59■■□□□ 1.69
CLN3-260ENST00000637578 ZNF496Q96IT1 587 aaPredicted RBP25.59■■□□□ 1.69
CLN3-260ENST00000637578 MYBBP1AQ9BQG0 1328 aaKnown RBP25.58■■□□□ 1.69
CLN3-260ENST00000637578 GYS1P13807 737 aa25.58■■□□□ 1.69
CLN3-260ENST00000637578 RTF1Q92541 710 aaKnown RBP25.57■■□□□ 1.68
CLN3-260ENST00000637578 MCM10Q7L590 875 aa25.56■■□□□ 1.68
CLN3-260ENST00000637578 SOS1Q07889 1333 aaPredicted RBP25.56■■□□□ 1.68
CLN3-260ENST00000637578 MMP10P09238 476 aa25.56■■□□□ 1.68
CLN3-260ENST00000637578 HEG1Q9ULI3 1381 aa25.55■■□□□ 1.68
CLN3-260ENST00000637578 BTBD11A6QL63 1104 aa25.55■■□□□ 1.68
CLN3-260ENST00000637578 PNNQ9H307 717 aaKnown RBP25.55■■□□□ 1.68
CLN3-260ENST00000637578 USP42Q9H9J4 1324 aaKnown RBP25.54■■□□□ 1.68
CLN3-260ENST00000637578 C4AP0C0L4 1744 aa25.54■■□□□ 1.68
CLN3-260ENST00000637578 NEFMP07197 916 aa25.53■■□□□ 1.68
CLN3-260ENST00000637578 DCTN1Q14203 1278 aa25.53■■□□□ 1.68
CLN3-260ENST00000637578 TEX13AQ9BXU3 409 aaPredicted RBP25.53■■□□□ 1.68
CLN3-260ENST00000637578 UTRNP46939 3433 aa25.53■■□□□ 1.68
CLN3-260ENST00000637578 KCNQ3O43525 872 aa25.52■■□□□ 1.68
CLN3-260ENST00000637578 FMNL2Q96PY5 1086 aa25.52■■□□□ 1.68
CLN3-260ENST00000637578 ZBTB1Q9Y2K1 713 aa25.52■■□□□ 1.68
CLN3-260ENST00000637578 STARD3NLO95772 234 aa25.52■■□□□ 1.68
CLN3-260ENST00000637578 GPR162Q16538 588 aa25.52■■□□□ 1.68
CLN3-260ENST00000637578 SRP68Q9UHB9 627 aaKnown RBP25.52■■□□□ 1.68
CLN3-260ENST00000637578 NFE2L2Q16236 605 aa25.51■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms